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Sequence and assembly

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Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

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No exon structure without labels
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Coding transcripts only (in coding genes)

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Non-coding RNA genes

Non-coding RNA imported from WormBase
Protein coding genes

Protein-coding model imported from WormBase

ncRNA

RNA-Seq Alignments

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Enable/disable all Life cycle - SRP013609
De novo nematode genome sequencing project to sequence, Ascaris suum, or Pig Roundworm.

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Enable/disable all Life cycle - SRP140708
Dual RNA-Seq of Ascaris suum larvae (L3) and Sus scrofa cells (IPEC-J2)

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Enable/disable all Other - SRP005510
Ascaris suum Small RNA-Seq data

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Enable/disable all Other - SRP005511
Ascaris suum transcriptome (RNA-Seq) data

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Enable/disable all Other - SRP010159
Ascaris suum Genome sequencing and assembly

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Enable/disable all Other - SRP013430
Ascaris suum Chromatin Diminution

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Enable/disable all Other - SRP013573
Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells

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Enable/disable all Other - SRP021466
Transcription in Pronuclei and One- to Four-Cell Embryos Drives Early Development in a Nematode

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Enable/disable all Other - SRP108384
Comparative Genome Analysis of Programmed DNA Elimination in Nematodes (Ascaris)

Pairwise whole genome alignments

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Repeat regions

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UC Denver Ascaris data

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Enable/disable all Genes
Gene models and annotation

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Enable/disable all Elimination
Programmed DNA Elimination

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Enable/disable all RNASeq
RNA-seq data

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Enable/disable all Histones
Histones data

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Enable/disable all SmallRNA
Small RNA data

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Enable/disable all Centromere
CENP-A and CENP-C data

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Enable/disable all Chromatin
ATAC-seq

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Labels
Structure
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Enable/disable all LongReads
PacBio, fosmid reads and optical mapping data

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Labels
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Enable/disable all Comparative
Comparative genomics data on conserved blocks

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Repetitive sequences

Information and decorations

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%GC

Shows percentage of Gs & Cs in region
Scale bar ()

Shows the scalebar
Ruler ()

Shows the length of the region being displayed
Alignment Difference Legend
Gene Legend
Variant Legend
Display in-track labels
Highlight current feature
Disabled track summary ()

Show counts of number of tracks turned off by the user
Information ()

Details of the region shown in the image