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Sequence and assembly

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Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

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Coding transcripts only (in coding genes)

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Non-coding RNA genes

Non-coding RNA imported from WormBase
Protein coding genes

Protein-coding model imported from WormBase
Pseudogenes

WormBase curated pseudogene

ncRNA

RNA-Seq Alignments

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Enable/disable all Other - SRP011366
Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression

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Enable/disable all Other - SRP019476
Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression

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Enable/disable all Other - SRP026198
mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition

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Enable/disable all Other - SRP034522
Conservation of mRNA and protein expression during development of C. elegans

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Enable/disable all Other - SRP056941
Developmental dynamics of C. elegans dosage compensation

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Enable/disable all Other - SRP067756
Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing

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Enable/disable all Other - SRP100798
Transcriptional response to viral infection in Caenorhabditis nematodes

Other - SRP159488

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Enable/disable all Other - SRP279004
Quantifying regulatory divergence using interspecies hybird RNA-seq assays in Caenorhabditis

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Enable/disable all Response to treatment - SRP218832
Transcriptional profiling of Caenorhabditis elegans and Caenorhabditis briggsae before and after heat shock

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Enable/disable all Variation within species - SRP016006
Caenorhabditis sex-specific RNAseq

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Enable/disable all Variation within species - SRP173664
Caenorhabditis briggsae transcriptome and genome sequencing

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Enable/disable all Variation within species - SRP212884
Genome-wide expression analysis of Caenorhabditis briggsae SPR-4/IVP-1 and HTZ-1/IVP-2 mutants

Pairwise whole genome alignments

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Repeat regions

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Information and decorations

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%GC

Shows percentage of Gs & Cs in region
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Shows the scalebar
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Shows the length of the region being displayed
Alignment Difference Legend
Gene Legend
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Show counts of number of tracks turned off by the user
Information ()

Details of the region shown in the image