Genome Assembly & Annotation
Short-insert Illumina reads were assembled with Velvet. Contigs were scaffolded with RNAseq-derived mRNA predictions using the SCUBAT pipeline, as described by Schiffer et al., 2019.
Gene models were predicted with Augustus, as described by Schiffer et al., 2019.
- Schiffer PH, Danchin EGJ, Burnell AM, Creevey CJ, Wong S, Dix I, O'Mahony G, Culleton BA, Rancurel C, Stier G, Martínez-Salazar EA, Marconi A, Trivedi U, Kroiher M, Thorne MAS, Schierenberg E, Wiehe T, Blaxter M. Signatures of the Evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes. iScience, 2019;21():587-602
|Data Source||University College London|
This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh