WormBase ParaSite HomeVersion: WBPS15 (WS276)

Panagrolaimus ps1159

BioProject PRJEB32708 | Data Source University College London | Taxonomy ID 55785

About Panagrolaimus ps1159

Panagrolaimus PS1159 is a free-living, parthenogenetic nematode. Like other members of the Panagrolaimus genus, it has enhanced ability to survive dessication stress.

Genome Assembly & Annotation

Assembly

Short-insert Illumina reads were assembled with Velvet. Contigs were scaffolded with RNAseq-derived mRNA predictions using the SCUBAT pipeline, as described by Schiffer et al., 2019.

Annotation

Gene models were predicted with Augustus, as described by Schiffer et al., 2019.

Key Publications

Assembly Statistics

AssemblyPS1159_v2, GCA_901765195.1
Database VersionWBPS15
Genome Size84,957,092
Data SourceUniversity College London
Annotation Version2020-03-WormBase

Gene counts

Coding genes24,802
Gene transcripts27,300

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About this species