Active tracks

Favourite tracks

Search results

Sorry, your search did not find any tracks

Track order

You have no favourite tracks. Use the star

icon to add tracks to your favourites

Sequence and assembly

Change track style
Off
On

Enable/disable all tracks

Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

Genes

Gene models from SmedGD, as described by Robb et al (2007)

ncRNA

RNA-Seq Alignments

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Cell types - SRP063836
RNA Seq analysis of sorted Schmidtea mediterranea X1 and Xins cells to identify factors specific to neoblasts

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Organism parts - SRP013005
Planarian stem cell transcriptome

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Organism parts - SRP091669
NPY-8-internalizing cells transcriptome in Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - ERP000581
The head-regeneration transcriptome of the planarian Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP006000
De novo assembly and validation of Planaria transcriptome by massive parallel sequencing and shotgun proteomics

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP009681
Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP026030
Schmidtea mediterranea Transcriptome or Gene expression

Other - SRP028872

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP028969
Schmidtea mediterranea CIW4 Transcriptome

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP031467
Schmidtea mediterranea FoxD-GFP RNAi Differential Expression Analysis

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP035509
Schmidtea mediterranea strain:CIW4 Transcriptome or Gene expression

Other - SRP042226

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP043140
Schmidtea mediteranea RNAi knockdown (ß-catenin, notum vs GFP)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP043189
Schmidtea mediterranea Transcriptome Assembly

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP058017
A mex3 homolog is required for differentiation during planarian stem cell lineage development

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP059140
Schmidtea mediterranea Raw sequence reads

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP062861
RNA Seq analysis of Schmidtea mediterranea treated with RNAi against chd4, p53, or unc22 to identify factors involved in neoblast differentiation.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP064848
Set1 and MLL1/2 target distinct sets of functionally different genomic loci in vivo: An in depth RNA-seq analysis of H3K4me3 targets in vivo and upon Set1 and mll1 knockdown

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP065271
Single-muscle-cell transcriptome profiling along the planarian anteroposterior axis

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP066558
Conserved functional antagonism between CELF and MBNL proteins regulates stem cell-specific alternative splicing and regeneration in planarians (dataset 1)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP066867
Conserved functional antagonism between CELF and MBNL proteins regulates stem cell-specific alternative splicing and regeneration in planarians (dataset 3)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP070102
PolyA position Profiling (3P-Seq) in Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP071204
HOX gene complement and expression in the planarian Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP074285
Gene expression profiling of planarian heads or cephalic ganglia after inhibition of Hedgehog signaling pathway genes by RNAi

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP076161
RNA Seq analysis of gene expression during Schmidtea mediterranea embryogenesis, including yolk and adult samples

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP078739
Role of microRNA miR124c during planarian brain regeneration.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP078776
Role of cytoplasmic poly (A) binding protein during planaria regeneration

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP083006
transcriptome of Smed-LPT RNAi

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP093467
Planarian epidermal stem cells respond to positional cues to promote cell type diversity

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP095154
Gene expression profiles along the planarian A/P axis.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP100443
Smed-hippo(RNAi) RNA-Seq

Other - SRP102921

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP109123
Schmidtea mediterranea cultivar:S2F2 Transcriptome or Gene expression

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP113707
Schmidtea mediterranea sexual vs. asexual head sequence reads

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP115085
The planarian TCF/LEF factor Smed-tcf1 is required for the regeneration of dorsal-lateral neuronal subtypes

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP121652
FOX and ETS family transcription factors regulate the pigment cell lineage in planarians

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP126228
nhr1 RNAi

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP126427
Tetraspanin family member functionally resolves and facilitates the purification of adult pluripotent stem cells used for whole-body regeneration (Single)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP126428
A tetraspanin family member functionally resolves and facilitates the purification of adult pluripotent stem cells used for whole-body regeneration (Bulk)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP126458
Sexual Regeneration RNAseq

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP158184
Smed-myb-1 specifies early temporal identity during planarian epidermal differentiation

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP158958
Transcriptional profiling of soxB1-2 RNAi planarians

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP161555
Gene expression profiling of planarians after inhibition of hmcn-1

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP167900
Planarians recruit piRNAs for mRNA turnover in adult stem cells

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP168467
A FoxF-1 regulatory program controls specification of muscle subsets and phagocytic cells in planarians

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP181555
Transcriptomic analysis of planarians under simulated microgravity and hypergravity

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP213858
Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP214257
Transcriptional profile of planarian FACS populations at different nutritional status

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP214683
Tnfaip2/Exoc3 driven lipid metabolism is essential for stem cell differentiation & organ homeostasis [Schmidtea mediterranea]

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP217326
Transcriptional profiling of laser captured intestinal tissue from the planarian Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP217572
Conserved targets of Wnt signaling in Schmidtea mediterranea and Hofstenia miamia

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP270347
RNA-Seq of adar1, adar2 and control RNAi worms (planarians)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP272800
Mitochondrial state determines functionally divergent stem cell population in planaria

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP285746
Canonical and early lineage-specific stem cell types identified in planarian SirNeoblasts

Other - SRP288179

Other - SRP303889

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Other - SRP310765
Examination of gene expression in S. mediterranea transitioning from recirculation to static culture in the presence or absence of Gentamycin at 0, 1, 2, 3, or 4 days

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP023151
Schmidtea mediterranea strain:CIW4 Transcriptome or Gene expression

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP041596
Wound-induced neoblast specialization in S. mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP064425
Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis, and maintenance of axial patterning

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP073670
RNA Seq analysis of gene expression in Planaria at 24, 48, 72, and 96 hours after exposure to 6k rad of gamma irradiation.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP073671
RNA Seq analysis of neoblasts from Schmidtea mediterranea treated with RNAi against zfp1, p53, or unc22 to identify factors involved in neoblast differentiation.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP073672
RNA Seq analysis in flatworm following 6, 12, or 18 day treatment with RNAi against Pax5, Sox8, or Zfp1, relative to unc22 to identify transcriptional targets.

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP074139
Schmidtea mediterranea isolate:CIW4 Raw sequence reads

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP074326
Schmidtea mediterranea Raw sequence reads (sexual strain and CPEB knockdowns)

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP077922
Egf signaling directs neoblast repopulation by regulating asymmetric cell division in planarians

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP103921
Yorkie is required to restrict the injury responses in planarians

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP107206
Gene expression profiling of intact individual planarians during homeostatic tissue turnover after inhibition of myoD or nkx1-1

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP107207
Gene expression profiling of regenerating planarian tails after inhibition of myoD and follistatin

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP115287
Schmidtea mediterranea Integrator complex subunit knockdown and small RNA sequencing

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP164884
RNA sequencing of pole-containing anterior tip regions in planarian Schmidtea mediterranea

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP164885
RNA sequencing of the head and tail of planarian Schmidtea mediterranea during nr4A inhibition

Change track style
Off
Wiggle plot
Compact
Manhattan plot

Enable/disable all Response to treatment - SRP255875
Gene expression profiling for: activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis

Pairwise whole genome alignments

Change track style
Off
Compact
Normal

Enable/disable all tracks

Repeat regions

Change track style
Off
On

Enable/disable all tracks

Information and decorations

Change track style
Off
On

Enable/disable all tracks

%GC

Shows percentage of Gs & Cs in region
Scale bar ()

Shows the scalebar
Ruler ()

Shows the length of the region being displayed
Alignment Difference Legend
Gene Legend
Variant Legend
Display in-track labels
Highlight current feature
Disabled track summary ()

Show counts of number of tracks turned off by the user
Information ()

Details of the region shown in the image