WormBase ParaSite HomeVersion: WBPS14 (WS271)

Schmidtea mediterranea

BioProject PRJNA379262 | Data Source Max Planck Institute of Molecular Cell Biology and Genetics | Taxonomy ID 79327

About Schmidtea mediterranea

The freshwater planarian Schmidtea mediterranea is commonly used as a model for regeneration and development of tissues, due to its ability to regenerate large portions of missing body parts.

There is 1 alternative genome project for Schmidtea mediterranea available in WormBase ParaSite: PRJNA12585

Genome Assembly & Annotation

Assembly

The assembly was produced using long-read sequencing and a de novo assembler (MARVEL) enhanced for low-complexity reads, as described by Grohme et al. (2018).

Annotation

The annotation is a set of Augustus predictions filtered for overlap with known repeats and coverage, as described by Rozanski et al. (2019). WormBase retrieved it from PlanMine 3.0.

Key Publications

Resources

PlanMine

Assembly Statistics

AssemblyASM260089v1, GCA_002600895.1
Database VersionWBPS14
Genome Size942,041,730
Data SourceMax Planck Institute of Molecular Cell Biology and Genetics
Annotation Version2019-05-WormBase

Gene counts

Coding genes22,090
Pseudogenes102
Gene transcripts31,102

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This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh

About this species