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RNASeq Nippostrongylus brasiliensis

Nippostrongylus brasiliensis - public RNASeq studies


ERP023010: Nippostrongylus brasiliensis Genome & Transcriptome sequencing and assembly

Malaghan Institute of Medical Research

Providing a high-quality reference genome, transcriptome and predicted proteome for Nippostrongylus brasiliensis. The assembly process uses MinION long reads for initial contig generation, with Illumina reads for subsequent error correction.
Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis. (Chandler .. Eccles, 2017)
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads. (Eccles .. Ewbank, 2018)

Design: 3 conditions

Condition num. replicates Culture conditions Developmental stage
L3 larvae, activated incubation 3 activated incubation (37°C) L3
L3 larvae, infective incubation 3 infective incubation (20°C) L3
L3 larvae, red-blood cell feeding 3 red-blood cell feeding (37°C) L3


These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

ERP017922: Nippostrongylus brasiliensis transcriptome

Wellcome Sanger Institute

6 runs in ENA