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RNASeq Nippostrongylus brasiliensis

Nippostrongylus brasiliensis - public RNASeq studies

Analysed

ERP023010: Nippostrongylus brasiliensis Genome & Transcriptome sequencing and assembly

Malaghan Institute of Medical Research

Providing a high-quality reference genome, transcriptome and predicted proteome for Nippostrongylus brasiliensis. The assembly process uses MinION long reads for initial contig generation, with Illumina reads for subsequent error correction.
Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis. (Chandler .. Eccles, 2017)
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads. (Eccles .. Ewbank, 2018)

Design: 3 conditions

Condition num. replicates Culture conditions Developmental stage
L3 larvae, activated incubation 3 activated incubation (37°C) L3
L3 larvae, infective incubation 3 infective incubation (20°C) L3
L3 larvae, red-blood cell feeding 3 red-blood cell feeding (37°C) L3

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

ERP017922: Nippostrongylus brasiliensis transcriptome

Wellcome Sanger Institute

4 runs in ENA