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RNASeq Steinernema carpocapsae

Steinernema carpocapsae - public RNASeq studies

Analysed

SRP277817: Comparative Transcriptomics of heads and tails between Steinernema carpocapsae and Caenorhabditis elegans

Mortazavi, Developmental and cell biology, University of California, Irvine

Design: 9 conditions

Condition num. replicates Developmental stage Genotype Organism part Source name Strain Title
sc_female_head 3 young adult wild type head activated in lawn of Xenorhabdus nematophila ALL sc_female_head
sc_female_tail 3 young adult wild type tail activated in lawn of Xenorhabdus nematophila ALL sc_female_tail
sc_female_whole 3 young adult wild type whole organism activated in lawn of Xenorhabdus nematophila ALL sc_female_whole
sc_male_head 3 young adult wild type head activated in lawn of Xenorhabdus nematophila ALL sc_male_head
sc_male_tail 3 young adult wild type tail activated in lawn of Xenorhabdus nematophila ALL sc_male_tail
sc_male_whole 3 young adult wild type whole organism activated in lawn of Xenorhabdus nematophila ALL sc_male_whole
sc_nave_head 3 Infective Juvenile (IJ) wild type head not activated Infective Juvenile(IJ) ALL sc_nave_head
sc_nave_tail 3 Infective Juvenile (IJ) wild type tail not activated Infective Juvenile(IJ) ALL sc_nave_tail
sc_nave_whole 3 Infective Juvenile (IJ) wild type whole organism not activated Infective Juvenile(IJ) ALL sc_nave_whole

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

SRP187486: Hybrid assembly of the genome of the entomopathogenic nematode Steinernema carpocapsae identifies the X-chromosome.

University of California Irvine

1 run in ENA