List the currently available assemblies for a species. NOTE: Response may be large
Name | Type | Description | Default | Example Values |
---|---|---|---|---|
species | String | Species name/alias | - |
brugia_malayi_prjna10729 |
Name | Type | Description | Default | Example Values |
---|---|---|---|---|
bands | Boolean(0,1) | If set to 1, include karyotype band information. Only display if band information is available | 0 | - |
callback | String | Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. | - |
randomlygeneratedname |
use strict; use warnings; use HTTP::Tiny; my $http = HTTP::Tiny->new(); my $server = 'https://parasite.wormbase.org'; my $ext = '/rest-19/info/assembly/onchocerca_volvulus_prjeb513?'; my $response = $http->get($server.$ext, { headers => { 'Content-type' => 'text/xml' } }); die "Failed!\n" unless $response->{success}; print "$response->{status} $response->{reason}\n";
import requests, sys server = "https://parasite.wormbase.org" ext = "/rest-19/info/assembly/onchocerca_volvulus_prjeb513?" r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""}) if not r.ok: r.raise_for_status() sys.exit() print r.text
import requests, sys server = "https://parasite.wormbase.org" ext = "/rest-19/info/assembly/onchocerca_volvulus_prjeb513?" r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""}) if not r.ok: r.raise_for_status() sys.exit() print(r.text)
require 'net/http' require 'uri' server='https://parasite.wormbase.org' path = '/rest-19/info/assembly/onchocerca_volvulus_prjeb513?' url = URI.parse(server) http = Net::HTTP.new(url.host, url.port) request = Net::HTTP::Get.new(path, {'Content-Type' => 'text/xml'}) response = http.request(request) if response.code != "200" puts "Invalid response: #{response.code}" puts response.body exit end puts response.body
import java.net.URL; import java.net.URLConnection; import java.net.HttpURLConnection; import java.io.BufferedReader; import java.io.InputStream; import java.io.InputStreamReader; import java.io.IOException; import java.io.Reader; public class EnsemblRest { public static void main(String[] args) throws Exception { String server = "https://parasite.wormbase.org"; String ext = "/rest-19/info/assembly/onchocerca_volvulus_prjeb513?"; URL url = new URL(server + ext); URLConnection connection = url.openConnection(); HttpURLConnection httpConnection = (HttpURLConnection)connection; httpConnection.setRequestProperty("Content-Type", "text/xml"); InputStream response = connection.getInputStream(); int responseCode = httpConnection.getResponseCode(); if(responseCode != 200) { throw new RuntimeException("Response code was not 200. Detected response was "+responseCode); } String output; Reader reader = null; try { reader = new BufferedReader(new InputStreamReader(response, "UTF-8")); StringBuilder builder = new StringBuilder(); char[] buffer = new char[8192]; int read; while ((read = reader.read(buffer, 0, buffer.length)) > 0) { builder.append(buffer, 0, read); } output = builder.toString(); } finally { if (reader != null) try { reader.close(); } catch (IOException logOrIgnore) { logOrIgnore.printStackTrace(); } } System.out.println(output); } }
curl 'https://parasite.wormbase.org/rest-19/info/assembly/onchocerca_volvulus_prjeb513?' -H 'Content-type:text/xml'
wget -q --header='Content-type:text/xml' 'https://parasite.wormbase.org/rest-19/info/assembly/onchocerca_volvulus_prjeb513?' -O -
Methods | GET |
Response formats | json xml jsonp |