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GET info/assembly/:species/:region_name

Returns information about the specified toplevel sequence region for the given species.

Parameters

Required

NameTypeDescriptionDefaultExample Values
region_name String The (top level) sequence region name. - Bm_v4_Chr2_contig_001
species String Species name/alias - brugia_malayi_prjna10729

Optional

NameTypeDescriptionDefaultExample Values
bands Boolean(0,1) If set to 1, include karyotype band information. Only display if band information is available 0 -
callback String Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. - randomlygeneratedname

Example Requests

/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?content-type=application/json


  1. use strict;
  2. use warnings;
  3.  
  4. use HTTP::Tiny;
  5.  
  6. my $http = HTTP::Tiny->new();
  7.  
  8. my $server = 'https://parasite.wormbase.org';
  9. my $ext = '/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?';
  10. my $response = $http->get($server.$ext, {
  11.   headers => { 'Content-type' => 'application/json' }
  12. });
  13.  
  14. die "Failed!\n" unless $response->{success};
  15.  
  16.  
  17. use JSON;
  18. use Data::Dumper;
  19. if(length $response->{content}) {
  20.   my $hash = decode_json($response->{content});
  21.   local $Data::Dumper::Terse = 1;
  22.   local $Data::Dumper::Indent = 1;
  23.   print Dumper $hash;
  24.   print "\n";
  25. }
  26.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12. decoded = r.json()
  13. print repr(decoded)
  14.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12. decoded = r.json()
  13. print(repr(decoded))
  14.  
  1. require 'net/http'
  2. require 'uri'
  3.  
  4. server='https://parasite.wormbase.org'
  5. path = '/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?'
  6.  
  7. url = URI.parse(server)
  8. http = Net::HTTP.new(url.host, url.port)
  9.  
  10. request = Net::HTTP::Get.new(path, {'Content-Type' => 'application/json'})
  11.  
  12. response = http.request(request)
  13.  
  14. if response.code != "200"
  15.   puts "Invalid response: #{response.code}"
  16.   puts response.body
  17.   exit
  18. end
  19.  
  20.  
  21. require 'rubygems'
  22. require 'json'
  23. require 'yaml'
  24.  
  25. result = JSON.parse(response.body)
  26. puts YAML::dump(result)
  27.  
  1. import java.net.URL;
  2. import java.net.URLConnection;
  3. import java.net.HttpURLConnection;
  4. import java.io.BufferedReader;
  5. import java.io.InputStream;
  6. import java.io.InputStreamReader;
  7. import java.io.IOException;
  8. import java.io.Reader;
  9.  
  10.  
  11. public class EnsemblRest {
  12.  
  13.   public static void main(String[] args) throws Exception {
  14.     String server = "https://parasite.wormbase.org";
  15.     String ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?";
  16.     URL url = new URL(server + ext);
  17.  
  18.     URLConnection connection = url.openConnection();
  19.     HttpURLConnection httpConnection = (HttpURLConnection)connection;
  20.     
  21.     httpConnection.setRequestProperty("Content-Type", "application/json");
  22.     
  23.  
  24.     InputStream response = connection.getInputStream();
  25.     int responseCode = httpConnection.getResponseCode();
  26.  
  27.     if(responseCode != 200) {
  28.       throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
  29.     }
  30.  
  31.     String output;
  32.     Reader reader = null;
  33.     try {
  34.       reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
  35.       StringBuilder builder = new StringBuilder();
  36.       char[] buffer = new char[8192];
  37.       int read;
  38.       while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
  39.         builder.append(buffer, 0, read);
  40.       }
  41.       output = builder.toString();
  42.     } 
  43.     finally {
  44.         if (reader != null) try {
  45.           reader.close(); 
  46.         } catch (IOException logOrIgnore) {
  47.           logOrIgnore.printStackTrace();
  48.         }
  49.     }
  50.  
  51.     System.out.println(output);
  52.   }
  53. }
  54.  
  1.  
  2. curl 'https://parasite.wormbase.org/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?' -H 'Content-type:application/json'
  3.  
  1. wget -q --header='Content-type:application/json' 'https://parasite.wormbase.org/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?'  -O -
  2.  

/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?content-type=text/xml


  1. use strict;
  2. use warnings;
  3.  
  4. use HTTP::Tiny;
  5.  
  6. my $http = HTTP::Tiny->new();
  7.  
  8. my $server = 'https://parasite.wormbase.org';
  9. my $ext = '/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?';
  10. my $response = $http->get($server.$ext, {
  11.   headers => { 'Content-type' => 'text/xml' }
  12. });
  13.  
  14. die "Failed!\n" unless $response->{success};
  15.  
  16.  
  17. print "$response->{status} $response->{reason}\n";
  18.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12.  
  13. print r.text
  14.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12.  
  13. print(r.text)
  14.  
  1. require 'net/http'
  2. require 'uri'
  3.  
  4. server='https://parasite.wormbase.org'
  5. path = '/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?'
  6.  
  7. url = URI.parse(server)
  8. http = Net::HTTP.new(url.host, url.port)
  9.  
  10. request = Net::HTTP::Get.new(path, {'Content-Type' => 'text/xml'})
  11.  
  12. response = http.request(request)
  13.  
  14. if response.code != "200"
  15.   puts "Invalid response: #{response.code}"
  16.   puts response.body
  17.   exit
  18. end
  19.  
  20.  
  21. puts response.body
  22.  
  1. import java.net.URL;
  2. import java.net.URLConnection;
  3. import java.net.HttpURLConnection;
  4. import java.io.BufferedReader;
  5. import java.io.InputStream;
  6. import java.io.InputStreamReader;
  7. import java.io.IOException;
  8. import java.io.Reader;
  9.  
  10.  
  11. public class EnsemblRest {
  12.  
  13.   public static void main(String[] args) throws Exception {
  14.     String server = "https://parasite.wormbase.org";
  15.     String ext = "/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?";
  16.     URL url = new URL(server + ext);
  17.  
  18.     URLConnection connection = url.openConnection();
  19.     HttpURLConnection httpConnection = (HttpURLConnection)connection;
  20.     
  21.     httpConnection.setRequestProperty("Content-Type", "text/xml");
  22.     
  23.  
  24.     InputStream response = connection.getInputStream();
  25.     int responseCode = httpConnection.getResponseCode();
  26.  
  27.     if(responseCode != 200) {
  28.       throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
  29.     }
  30.  
  31.     String output;
  32.     Reader reader = null;
  33.     try {
  34.       reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
  35.       StringBuilder builder = new StringBuilder();
  36.       char[] buffer = new char[8192];
  37.       int read;
  38.       while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
  39.         builder.append(buffer, 0, read);
  40.       }
  41.       output = builder.toString();
  42.     } 
  43.     finally {
  44.         if (reader != null) try {
  45.           reader.close(); 
  46.         } catch (IOException logOrIgnore) {
  47.           logOrIgnore.printStackTrace();
  48.         }
  49.     }
  50.  
  51.     System.out.println(output);
  52.   }
  53. }
  54.  
  1.  
  2. curl 'https://parasite.wormbase.org/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?' -H 'Content-type:text/xml'
  3.  
  1. wget -q --header='Content-type:text/xml' 'https://parasite.wormbase.org/rest-19/info/assembly/brugia_malayi_prjna10729/Bm_v4_Chr2_contig_001?'  -O -
  2.  

Resource Information

MethodsGET
Response formatsjson
xml
jsonp