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GET info/genomes

Find information about all genomes. Response may be very large.

Parameters

Required

No required parameters

Optional

NameTypeDescriptionDefaultExample Values
callback String Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. - randomlygeneratedname
expand Boolean(0,1) Expands the information to include details of sequences. Can be very large. NULL -

Example Requests

/rest-19/info/genomes/?content-type=text/xml


<opt>
  <data assembly_accession="GCA_900537255.1" assembly_level="scaffold" assembly_name="ASM90053725v1" base_count="77350906" dbname="acanthocheilonema_viteae_prjeb1697_core_19_111_1" display_name="Acanthocheilonema viteae (PRJEB1697)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6277" taxonomy_id="6277"/>
  <data assembly_accession="GCA_900406225.1" assembly_level="scaffold" assembly_name="v1" base_count="248054631" dbname="acrobeloides_nanus_prjeb26554_core_19_111_1" display_name="Acrobeloides nanus (PRJEB26554)" genebuild="2018-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="290746" taxonomy_id="290746"/>
  <data assembly_accession="GCA_945643635.1" assembly_level="scaffold" assembly_name="Allodiplogaster_sudhausi_assembly_II" base_count="352146914" dbname="allodiplogaster_sudhausi_prjeb48369_core_19_111_1" display_name="Allodiplogaster sudhausi (PRJEB48369)" genebuild="2023-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2761625" taxonomy_id="2761625"/>
  <data assembly_accession="" assembly_level="scaffold" assembly_name="A_caninum_9.3.2.ec.cg.pg" base_count="465750606" dbname="ancylostoma_caninum_prjna72585_core_19_111_1" display_name="Ancylostoma caninum (PRJNA72585)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="29170" taxonomy_id="29170"/>
  <data assembly_accession="GCA_000688135.1" assembly_level="scaffold" assembly_name="Acey_2013.11.30.genDNA" base_count="313092710" dbname="ancylostoma_ceylanicum_prjna231479_core_19_111_1" display_name="Ancylostoma ceylanicum (PRJNA231479)" genebuild="2023-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="53326" taxonomy_id="53326"/>
  <data assembly_accession="GCA_000402015.1" assembly_level="scaffold" assembly_name="A_ceylanicum1.3.ec.cg.pg" base_count="348994891" dbname="ancylostoma_ceylanicum_prjna72583_core_19_111_1" display_name="Ancylostoma ceylanicum (PRJNA72583)" genebuild="2020-04-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="53326" taxonomy_id="53326"/>
  <data assembly_accession="GCA_000816745.1" assembly_level="scaffold" assembly_name="A_duodenale_2.2.ec.cg.pg" base_count="332878295" dbname="ancylostoma_duodenale_prjna72581_core_19_111_1" display_name="Ancylostoma duodenale (PRJNA72581)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="51022" taxonomy_id="51022"/>
  <data assembly_accession="GCA_000950995.1" assembly_level="scaffold" assembly_name="A_cantonensis_Taipei_v1_5_4" base_count="253242791" dbname="angiostrongylus_cantonensis_prjeb493_core_19_111_1" display_name="Angiostrongylus cantonensis (PRJEB493)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6313" taxonomy_id="6313"/>
  <data assembly_accession="GCA_009735665.1" assembly_level="scaffold" assembly_name="ACgenome_NGS_v2" base_count="293306699" dbname="angiostrongylus_cantonensis_prjna350391_core_19_111_1" display_name="Angiostrongylus cantonensis (PRJNA350391)" genebuild="2020-03-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6313" taxonomy_id="6313"/>
  <data assembly_accession="GCA_900624975.1" assembly_level="scaffold" assembly_name="A_costaricensis_Costa_Rica_0011_upd" base_count="262782696" dbname="angiostrongylus_costaricensis_prjeb494_core_19_111_1" display_name="Angiostrongylus costaricensis (PRJEB494)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="334426" taxonomy_id="334426"/>
  <data assembly_accession="GCA_018806985.1" assembly_level="scaffold" assembly_name="UZH_Avas_1.0" base_count="279948744" dbname="angiostrongylus_vasorum_prjna663250_core_19_111_1" display_name="Angiostrongylus vasorum (PRJNA663250)" genebuild="2021-10-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="321387" taxonomy_id="321387"/>
  <data assembly_accession="GCA_900617985.1" assembly_level="scaffold" assembly_name="A_simplex_0011_upd" base_count="126869778" dbname="anisakis_simplex_prjeb496_core_19_111_1" display_name="Anisakis simplex (PRJEB496)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6269" taxonomy_id="6269"/>
  <data assembly_accession="GCA_024699835.1" assembly_level="scaffold" assembly_name="AORJ.fasta" base_count="46759715" dbname="aphelenchoides_besseyi_aorjprjna834627_core_19_111_1" display_name="Aphelenchoides besseyi (AORJ PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="269767" taxonomy_id="269767"/>
  <data assembly_accession="GCA_024699855.1" assembly_level="scaffold" assembly_name="AORT.fasta" base_count="47428222" dbname="aphelenchoides_besseyi_aortprjna834627_core_19_111_1" display_name="Aphelenchoides besseyi (AORT PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="269767" taxonomy_id="269767"/>
  <data assembly_accession="GCA_024699915.1" assembly_level="scaffold" assembly_name="APFT.fasta" base_count="44700143" dbname="aphelenchoides_besseyi_apftprjna834627_core_19_111_1" display_name="Aphelenchoides besseyi (APFT PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="269767" taxonomy_id="269767"/>
  <data assembly_accession="GCA_024699875.1" assembly_level="scaffold" assembly_name="APVT.fasta" base_count="44715554" dbname="aphelenchoides_besseyi_apvtprjna834627_core_19_111_1" display_name="Aphelenchoides besseyi (APVT PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="269767" taxonomy_id="269767"/>
  <data assembly_accession="GCA_024699845.1" assembly_level="scaffold" assembly_name="Abicaudatus.fasta" base_count="46428382" dbname="aphelenchoides_bicaudatus_prjna834627_core_19_111_1" display_name="Aphelenchoides bicaudatus (PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="293665" taxonomy_id="293665"/>
  <data assembly_accession="GCA_024699865.1" assembly_level="scaffold" assembly_name="Afujianensis.fasta" base_count="143834322" dbname="aphelenchoides_fujianensis_prjna834627_core_19_111_1" display_name="Aphelenchoides fujianensis (PRJNA834627)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="1052528" taxonomy_id="1052528"/>
  <data assembly_accession="GCA_000951055.1" assembly_level="scaffold" assembly_name="A_lumbricoides_Ecuador_v1_5_4" base_count="316975410" dbname="ascaris_lumbricoides_prjeb4950_core_19_111_1" display_name="Ascaris lumbricoides (PRJEB4950)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6252" taxonomy_id="6252"/>
  <data assembly_accession="GCA_000187025.3" assembly_level="scaffold" assembly_name="ASM18702v3" base_count="298028455" dbname="ascaris_suum_prjna62057_core_19_111_1" display_name="Ascaris suum (PRJNA62057)" genebuild="2018-04-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6253" taxonomy_id="6253"/>
  <data assembly_accession="" assembly_level="scaffold" assembly_name="AscSuum_1.0_submitted" base_count="272782664" dbname="ascaris_suum_prjna80881_core_19_111_1" display_name="Ascaris suum (PRJNA80881)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6253" taxonomy_id="6253"/>
  <data assembly_accession="GCA_013407085.1" assembly_level="scaffold" assembly_name="ASM1340708v1" base_count="601728533" dbname="atriophallophorus_winterbourni_prjna636673_core_19_111_1" display_name="Atriophallophorus winterbourni (PRJNA636673)" genebuild="2021-03-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2682772" taxonomy_id="2682772"/>
  <data assembly_accession="GCA_943334845.2" assembly_level="scaffold" assembly_name="JU1783_megahit_v1_1" base_count="59698091" dbname="auanema_ju1783_prjeb51845_core_19_111_1" display_name="Auanema sp. JU1783 (PRJEB51845)" genebuild="2023-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2878363" taxonomy_id="2878363"/>
  <data assembly_accession="GCA_024678965.1" assembly_level="scaffold" assembly_name="AAFC-BrLi-01_v2" base_count="80637718" dbname="bradynema_listronoti_prjna842945_core_19_111_1" display_name="Bradynema listronoti (PRJNA842945)" genebuild="2023-10-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="413010" taxonomy_id="413010"/>
  <data assembly_accession="GCA_000002995.5" assembly_level="supercontig" assembly_name="Bmal-4.0" base_count="88235797" dbname="brugia_malayi_prjna10729_core_19_111_290" display_name="Brugia malayi (PRJNA10729)" genebuild="282" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6279" taxonomy_id="6279"/>
  <data assembly_accession="GCA_900618355.1" assembly_level="scaffold" assembly_name="B_pahangi_Glasgow_0011_upd" base_count="90545113" dbname="brugia_pahangi_prjeb497_core_19_111_1" display_name="Brugia pahangi (PRJEB497)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6280" taxonomy_id="6280"/>
  <data assembly_accession="GCA_900618025.1" assembly_level="scaffold" assembly_name="B_timori_Indonesia_v1_0_4_001_upd" base_count="64930714" dbname="brugia_timori_prjeb4663_core_19_111_1" display_name="Brugia timori (PRJEB4663)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="42155" taxonomy_id="42155"/>
  <data assembly_accession="GCA_014805405.1" assembly_level="scaffold" assembly_name="ASM1480540v1" base_count="34132504" dbname="bunonema_rgd898_prjna655932_core_19_111_1" display_name="Bunonema rgd898 (PRJNA655932)" genebuild="2023-10-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2761626" taxonomy_id="2761626"/>
  <data assembly_accession="GCA_904067145.1" assembly_level="scaffold" assembly_name="BOKI2" base_count="69956301" dbname="bursaphelenchus_okinawaensis_prjeb40023_core_19_111_1" display_name="Bursaphelenchus okinawaensis (PRJEB40023)" genebuild="2021-03-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="465554" taxonomy_id="465554"/>
  <data assembly_accession="GCA_000231135.1" assembly_level="scaffold" assembly_name="ASM23113v1_submitted" base_count="74561461" dbname="bursaphelenchus_xylophilus_prjea64437_core_19_111_1" display_name="Bursaphelenchus xylophilus (PRJEA64437)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6326" taxonomy_id="6326"/>
  <data assembly_accession="GCA_904067135.1" assembly_level="scaffold" assembly_name="BXYJ5" base_count="78274012" dbname="bursaphelenchus_xylophilus_prjeb40022_core_19_111_1" display_name="Bursaphelenchus xylophilus (PRJEB40022)" genebuild="2021-03-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6326" taxonomy_id="6326"/>
  <data assembly_accession="GCA_000165025.1" assembly_level="supercontig" assembly_name="ps1010rel4" base_count="105997628" dbname="caenorhabditis_angaria_prjna51225_core_19_111_1" display_name="Caenorhabditis angaria (PRJNA51225)" genebuild="2012-12-Caltech" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="860376" taxonomy_id="860376"/>
  <data assembly_accession="GCA_904845305.1" assembly_level="scaffold" assembly_name="CAUJ" base_count="109583113" dbname="caenorhabditis_auriculariae_prjeb40642_core_19_111_1" display_name="Caenorhabditis auriculariae (PRJEB40642)" genebuild="2022-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2777116" taxonomy_id="2777116"/>
  <data assembly_accession="GCA_900536315.3" assembly_level="scaffold" assembly_name="CBECE_v1" base_count="87867412" dbname="caenorhabditis_becei_prjeb28243_core_19_111_1" display_name="Caenorhabditis becei (PRJEB28243)" genebuild="2020-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2301260" taxonomy_id="2301260"/>
  <data assembly_accession="GCA_902636285.1" assembly_level="scaffold" assembly_name="CBOVIS_v1" base_count="62726283" dbname="caenorhabditis_bovis_prjeb34497_core_19_111_1" display_name="Caenorhabditis bovis (PRJEB34497)" genebuild="2020-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2654633" taxonomy_id="2654633"/>
  <data assembly_accession="GCA_000143925.2" assembly_level="supercontig" assembly_name="C_brenneri-6.0.1b" base_count="190369721" dbname="caenorhabditis_brenneri_prjna20035_core_19_111_290" display_name="Caenorhabditis brenneri (PRJNA20035)" genebuild="282" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="135651" taxonomy_id="135651"/>
  <data assembly_accession="GCA_000004555.3" assembly_level="chromosome" assembly_name="CB4" base_count="108384165" dbname="caenorhabditis_briggsae_prjna10731_core_19_111_290" display_name="Caenorhabditis briggsae (PRJNA10731)" genebuild="WS290" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6238" taxonomy_id="6238"/>
  <data assembly_accession="GCA_021491975.1" assembly_level="scaffold" assembly_name="ASM2149197v1" base_count="106196058" dbname="caenorhabditis_briggsae_qx1410prjna784955_core_19_111_1" display_name="Caenorhabditis briggsae (QX1410 PRJNA784955)" genebuild="2022-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6238" taxonomy_id="6238"/>
  <data assembly_accession="GCA_022453885.1" assembly_level="scaffold" assembly_name="ASM2245388v1" base_count="106953292" dbname="caenorhabditis_briggsae_vx34prjna784955_core_19_111_1" display_name="Caenorhabditis briggsae (VX34 PRJNA784955)" genebuild="2022-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6238" taxonomy_id="6238"/>
  <data assembly_accession="GCA_000002985.3" assembly_level="chromosome" assembly_name="WBcel235" base_count="100286401" dbname="caenorhabditis_elegans_prjna13758_core_19_111_290" display_name="Caenorhabditis elegans (PRJNA13758)" genebuild="WS290" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6239" taxonomy_id="6239"/>
  <data assembly_accession="GCA_003052745.1" assembly_level="scaffold" assembly_name="Sp34_v7" base_count="122994328" dbname="caenorhabditis_inopinata_prjdb5687_core_19_111_1" display_name="Caenorhabditis inopinata (PRJDB5687)" genebuild="2018-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="1978547" taxonomy_id="1978547"/>
  <data assembly_accession="GCA_000147155.1" assembly_level="supercontig" assembly_name="C_japonica-7.0.1" base_count="166256191" dbname="caenorhabditis_japonica_prjna12591_core_19_111_290" display_name="Caenorhabditis japonica (PRJNA12591)" genebuild="WS290" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="281687" taxonomy_id="281687"/>
  <data assembly_accession="GCA_002259235.1" assembly_level="scaffold" assembly_name="CaeLat1.0" base_count="117124750" dbname="caenorhabditis_latens_prjna248912_core_19_111_1" display_name="Caenorhabditis latens (PRJNA248912)" genebuild="2018-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="1503980" taxonomy_id="1503980"/>
  <data assembly_accession="GCA_002742825.1" assembly_level="scaffold" assembly_name="nigoni.pc_2016.07.14" base_count="129488540" dbname="caenorhabditis_nigoni_prjna384657_core_19_111_1" display_name="Caenorhabditis nigoni (PRJNA384657)" genebuild="2018-01-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="1611254" taxonomy_id="1611254"/>
  <data assembly_accession="GCA_900883565.2" assembly_level="scaffold" assembly_name="CPANA_v1" base_count="79045575" dbname="caenorhabditis_panamensis_prjeb28259_core_19_111_1" display_name="Caenorhabditis panamensis (PRJEB28259)" genebuild="2020-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="2301259" taxonomy_id="2301259"/>
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  <data assembly_accession="GCA_000797535.1" assembly_level="scaffold" assembly_name="T_suis_1.0.allpaths" base_count="63839715" dbname="trichuris_suis_prjna179528_core_19_111_1" display_name="Trichuris suis (PRJNA179528)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="68888" taxonomy_id="68888"/>
  <data assembly_accession="GCA_000701005.1" assembly_level="scaffold" assembly_name="Tsuis_adult_male_v1.0" base_count="74234559" dbname="trichuris_suis_prjna208415_core_19_111_1" display_name="Trichuris suis (PRJNA208415 - male)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="68888" taxonomy_id="68888"/>
  <data assembly_accession="GCA_000701025.1" assembly_level="scaffold" assembly_name="Tsuis_adult_female_1.0" base_count="71056402" dbname="trichuris_suis_prjna208416_core_19_111_1" display_name="Trichuris suis (PRJNA208416 - female)" genebuild="2014-05-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="68888" taxonomy_id="68888"/>
  <data assembly_accession="" assembly_level="contig" assembly_name="TTRE3.0" base_count="80573711" dbname="trichuris_trichiura_prjeb535_core_19_111_1" display_name="Trichuris trichiura (PRJEB535)" genebuild="2022-11-WormBase" has_genome_alignments="0" has_other_alignments="0" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="36087" taxonomy_id="36087"/>
  <data assembly_accession="GCA_030248225.1" assembly_level="scaffold" assembly_name="ASM3024822v1" base_count="738795508" dbname="trileptium_ribeirensis_prjna953805_core_19_111_1" display_name="Trileptium ribeirensis (PRJNA953805)" genebuild="2023-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="3040840" taxonomy_id="3040840"/>
  <data assembly_accession="GCA_030248195.1" assembly_level="scaffold" assembly_name="ASM3024819v1" base_count="642239299" dbname="trissonchulus_latispiculum_prjna953805_core_19_111_1" display_name="Trissonchulus latispiculum (PRJNA953805)" genebuild="2023-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="3040841" taxonomy_id="3040841"/>
  <data assembly_accession="GCA_030248245.1" assembly_level="scaffold" assembly_name="ASM3024824v1" base_count="421514493" dbname="trissonchulus_wlg14_prjna953805_core_19_111_1" display_name="Trissonchulus sp. WLG1_4 (PRJNA953805)" genebuild="2023-08-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="3043727" taxonomy_id="3043727"/>
  <data assembly_accession="GCA_900622535.1" assembly_level="scaffold" assembly_name="W_bancrofti_Jakarta_0011_upd" base_count="76991470" dbname="wuchereria_bancrofti_prjeb536_core_19_111_1" display_name="Wuchereria bancrofti (PRJEB536)" genebuild="2014-06-50HGPpatch" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6293" taxonomy_id="6293"/>
  <data assembly_accession="GCA_005281725.1" assembly_level="scaffold" assembly_name="ASM528172v1" base_count="88416250" dbname="wuchereria_bancrofti_prjna275548_core_19_111_1" display_name="Wuchereria bancrofti (PRJNA275548)" genebuild="2023-09-WormBase" has_genome_alignments="0" has_other_alignments="1" has_pan_compara="0" has_peptide_compara="0" has_synteny="0" has_variations="0" species_taxonomy_id="6293" taxonomy_id="6293"/>
</opt>
  1. use strict;
  2. use warnings;
  3.  
  4. use HTTP::Tiny;
  5.  
  6. my $http = HTTP::Tiny->new();
  7.  
  8. my $server = 'https://parasite.wormbase.org';
  9. my $ext = '/rest-19/info/genomes/?';
  10. my $response = $http->get($server.$ext, {
  11.   headers => { 'Content-type' => 'text/xml' }
  12. });
  13.  
  14. die "Failed!\n" unless $response->{success};
  15.  
  16.  
  17. print "$response->{status} $response->{reason}\n";
  18.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/genomes/?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12.  
  13. print r.text
  14.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/info/genomes/?"
  5.  
  6. r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12.  
  13. print(r.text)
  14.  
  1. require 'net/http'
  2. require 'uri'
  3.  
  4. server='https://parasite.wormbase.org'
  5. path = '/rest-19/info/genomes/?'
  6.  
  7. url = URI.parse(server)
  8. http = Net::HTTP.new(url.host, url.port)
  9.  
  10. request = Net::HTTP::Get.new(path, {'Content-Type' => 'text/xml'})
  11.  
  12. response = http.request(request)
  13.  
  14. if response.code != "200"
  15.   puts "Invalid response: #{response.code}"
  16.   puts response.body
  17.   exit
  18. end
  19.  
  20.  
  21. puts response.body
  22.  
  1. import java.net.URL;
  2. import java.net.URLConnection;
  3. import java.net.HttpURLConnection;
  4. import java.io.BufferedReader;
  5. import java.io.InputStream;
  6. import java.io.InputStreamReader;
  7. import java.io.IOException;
  8. import java.io.Reader;
  9.  
  10.  
  11. public class EnsemblRest {
  12.  
  13.   public static void main(String[] args) throws Exception {
  14.     String server = "https://parasite.wormbase.org";
  15.     String ext = "/rest-19/info/genomes/?";
  16.     URL url = new URL(server + ext);
  17.  
  18.     URLConnection connection = url.openConnection();
  19.     HttpURLConnection httpConnection = (HttpURLConnection)connection;
  20.     
  21.     httpConnection.setRequestProperty("Content-Type", "text/xml");
  22.     
  23.  
  24.     InputStream response = connection.getInputStream();
  25.     int responseCode = httpConnection.getResponseCode();
  26.  
  27.     if(responseCode != 200) {
  28.       throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
  29.     }
  30.  
  31.     String output;
  32.     Reader reader = null;
  33.     try {
  34.       reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
  35.       StringBuilder builder = new StringBuilder();
  36.       char[] buffer = new char[8192];
  37.       int read;
  38.       while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
  39.         builder.append(buffer, 0, read);
  40.       }
  41.       output = builder.toString();
  42.     } 
  43.     finally {
  44.         if (reader != null) try {
  45.           reader.close(); 
  46.         } catch (IOException logOrIgnore) {
  47.           logOrIgnore.printStackTrace();
  48.         }
  49.     }
  50.  
  51.     System.out.println(output);
  52.   }
  53. }
  54.  
  1.  
  2. curl 'https://parasite.wormbase.org/rest-19/info/genomes/?' -H 'Content-type:text/xml'
  3.  
  1. wget -q --header='Content-type:text/xml' 'https://parasite.wormbase.org/rest-19/info/genomes/?'  -O -
  2.  

Resource Information

MethodsGET
Response formatsjson
xml
jsonp