GET lookup/id/:id

Find the species and database for a single identifier

Parameters

Required

Name	Type	Description	Default	Example Values
id	`String`	A stable ID	`-`	`WBGene00221255`

Optional

Name	Type	Description	Default	Example Values
callback	`String`	Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide.	`-`	`randomlygeneratedname`
db_type	`String`	Restrict the search to a database other than the default. Useful if you need to use a DB other than core	`-`	`core`
expand	`Boolean(0,1)`	Expands the search to include any connected features. e.g. If the object is a gene, its transcripts, translations and exons will be returned as well.	`0`	`-`
format	`Enum(full,condensed)`	Specify the formats to emit from this endpoint	`full`	`-`
species	`String`	Species name/alias	`-`	`brugia_malayi_prjna10729`

Example Requests

/rest-19/lookup/id/WBGene00221255?content-type=application/json;expand=1

use strict;
use warnings;
 
use HTTP::Tiny;
 
my $http = HTTP::Tiny->new();
 
my $server = 'https://parasite.wormbase.org';
my $ext = '/rest-19/lookup/id/WBGene00221255?expand=1';
my $response = $http->get($server.$ext, {
  headers => { 'Content-type' => 'application/json' }
});
 
die "Failed!\n" unless $response->{success};
 
 
use JSON;
use Data::Dumper;
if(length $response->{content}) {
  my $hash = decode_json($response->{content});
  local $Data::Dumper::Terse = 1;
  local $Data::Dumper::Indent = 1;
  print Dumper $hash;
  print "\n";
}

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?expand=1"
 
r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print repr(decoded)

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?expand=1"
 
r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print(repr(decoded))

require 'net/http'
require 'uri'
 
server='https://parasite.wormbase.org'
path = '/rest-19/lookup/id/WBGene00221255?expand=1'
 
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
 
request = Net::HTTP::Get.new(path, {'Content-Type' => 'application/json'})
 
response = http.request(request)
 
if response.code != "200"
  puts "Invalid response: #{response.code}"
  puts response.body
  exit
end
 
 
require 'rubygems'
require 'json'
require 'yaml'
 
result = JSON.parse(response.body)
puts YAML::dump(result)

import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
 
 
public class EnsemblRest {
 
  public static void main(String[] args) throws Exception {
    String server = "https://parasite.wormbase.org";
    String ext = "/rest-19/lookup/id/WBGene00221255?expand=1";
    URL url = new URL(server + ext);
 
    URLConnection connection = url.openConnection();
    HttpURLConnection httpConnection = (HttpURLConnection)connection;
    
    httpConnection.setRequestProperty("Content-Type", "application/json");
    
 
    InputStream response = connection.getInputStream();
    int responseCode = httpConnection.getResponseCode();
 
    if(responseCode != 200) {
      throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
    }
 
    String output;
    Reader reader = null;
    try {
      reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
      StringBuilder builder = new StringBuilder();
      char[] buffer = new char[8192];
      int read;
      while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
        builder.append(buffer, 0, read);
      }
      output = builder.toString();
    } 
    finally {
        if (reader != null) try {
          reader.close(); 
        } catch (IOException logOrIgnore) {
          logOrIgnore.printStackTrace();
        }
    }
 
    System.out.println(output);
  }
}

 
curl 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?expand=1' -H 'Content-type:application/json'

wget -q --header='Content-type:application/json' 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?expand=1'  -O -

/rest-19/lookup/id/WBGene00221255?content-type=application/json

 {
  "source": "WormBase",
  "display_name": "Bm994",
  "start": 479867,
  "seq_region_name": "Bm_007",
  "description": "WH2 motif family protein  [Source:UniProtKB/TrEMBL;Acc:A0A4E9FZ75]",
  "logic_name": "wormbase",
  "canonical_transcript": "Bm994.1.",
  "version": 1,
  "end": 484217,
  "db_type": "core",
  "strand": -1,
  "biotype": "protein_coding",
  "species": "brugia_malayi_prjna10729",
  "id": "WBGene00221255",
  "object_type": "Gene",
  "assembly_name": "Bmal-4.0"
}

use strict;
use warnings;
 
use HTTP::Tiny;
 
my $http = HTTP::Tiny->new();
 
my $server = 'https://parasite.wormbase.org';
my $ext = '/rest-19/lookup/id/WBGene00221255?';
my $response = $http->get($server.$ext, {
  headers => { 'Content-type' => 'application/json' }
});
 
die "Failed!\n" unless $response->{success};
 
 
use JSON;
use Data::Dumper;
if(length $response->{content}) {
  my $hash = decode_json($response->{content});
  local $Data::Dumper::Terse = 1;
  local $Data::Dumper::Indent = 1;
  print Dumper $hash;
  print "\n";
}

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?"
 
r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print repr(decoded)

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?"
 
r = requests.get(server+ext, headers={ "Content-Type" : "application/json", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print(repr(decoded))

require 'net/http'
require 'uri'
 
server='https://parasite.wormbase.org'
path = '/rest-19/lookup/id/WBGene00221255?'
 
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
 
request = Net::HTTP::Get.new(path, {'Content-Type' => 'application/json'})
 
response = http.request(request)
 
if response.code != "200"
  puts "Invalid response: #{response.code}"
  puts response.body
  exit
end
 
 
require 'rubygems'
require 'json'
require 'yaml'
 
result = JSON.parse(response.body)
puts YAML::dump(result)

import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
 
 
public class EnsemblRest {
 
  public static void main(String[] args) throws Exception {
    String server = "https://parasite.wormbase.org";
    String ext = "/rest-19/lookup/id/WBGene00221255?";
    URL url = new URL(server + ext);
 
    URLConnection connection = url.openConnection();
    HttpURLConnection httpConnection = (HttpURLConnection)connection;
    
    httpConnection.setRequestProperty("Content-Type", "application/json");
    
 
    InputStream response = connection.getInputStream();
    int responseCode = httpConnection.getResponseCode();
 
    if(responseCode != 200) {
      throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
    }
 
    String output;
    Reader reader = null;
    try {
      reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
      StringBuilder builder = new StringBuilder();
      char[] buffer = new char[8192];
      int read;
      while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
        builder.append(buffer, 0, read);
      }
      output = builder.toString();
    } 
    finally {
        if (reader != null) try {
          reader.close(); 
        } catch (IOException logOrIgnore) {
          logOrIgnore.printStackTrace();
        }
    }
 
    System.out.println(output);
  }
}

 
curl 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?' -H 'Content-type:application/json'

wget -q --header='Content-type:application/json' 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?'  -O -

/rest-19/lookup/id/WBGene00221255?db_type=core;content-type=text/xml;format=condensed

<opt>
  <data id="WBGene00221255" db_type="core" object_type="Gene" species="brugia_malayi_prjna10729" version="1"/>
</opt>

use strict;
use warnings;
 
use HTTP::Tiny;
 
my $http = HTTP::Tiny->new();
 
my $server = 'https://parasite.wormbase.org';
my $ext = '/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core';
my $response = $http->get($server.$ext, {
  headers => { 'Content-type' => 'text/xml' }
});
 
die "Failed!\n" unless $response->{success};
 
 
print "$response->{status} $response->{reason}\n";

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core"
 
r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
 
print r.text

import requests, sys
 
server = "https://parasite.wormbase.org"
ext = "/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core"
 
r = requests.get(server+ext, headers={ "Content-Type" : "text/xml", "Accept" : ""})
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
 
print(r.text)

require 'net/http'
require 'uri'
 
server='https://parasite.wormbase.org'
path = '/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core'
 
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
 
request = Net::HTTP::Get.new(path, {'Content-Type' => 'text/xml'})
 
response = http.request(request)
 
if response.code != "200"
  puts "Invalid response: #{response.code}"
  puts response.body
  exit
end
 
 
puts response.body

import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
 
 
public class EnsemblRest {
 
  public static void main(String[] args) throws Exception {
    String server = "https://parasite.wormbase.org";
    String ext = "/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core";
    URL url = new URL(server + ext);
 
    URLConnection connection = url.openConnection();
    HttpURLConnection httpConnection = (HttpURLConnection)connection;
    
    httpConnection.setRequestProperty("Content-Type", "text/xml");
    
 
    InputStream response = connection.getInputStream();
    int responseCode = httpConnection.getResponseCode();
 
    if(responseCode != 200) {
      throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
    }
 
    String output;
    Reader reader = null;
    try {
      reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
      StringBuilder builder = new StringBuilder();
      char[] buffer = new char[8192];
      int read;
      while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
        builder.append(buffer, 0, read);
      }
      output = builder.toString();
    } 
    finally {
        if (reader != null) try {
          reader.close(); 
        } catch (IOException logOrIgnore) {
          logOrIgnore.printStackTrace();
        }
    }
 
    System.out.println(output);
  }
}

 
curl 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core' -H 'Content-type:text/xml'

wget -q --header='Content-type:text/xml' 'https://parasite.wormbase.org/rest-19/lookup/id/WBGene00221255?format=condensed;db_type=core'  -O -

Resource Information

Methods	GET
Response formats	json xml jsonp