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POST sequence/region/:species

Request multiple types of sequence by a list of regions.

Parameters

Required

NameTypeDescriptionDefaultExample Values
species String Species name/alias - brugia_malayi_prjna10729

Optional

NameTypeDescriptionDefaultExample Values
callback String Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. - randomlygeneratedname
coord_system String Filter by coordinate system name - contig
seqlevel
coord_system_version String Filter by coordinate system version - GRCh37
expand_3prime Int Expand the sequence downstream of the sequence by this many basepairs. Only available when using genomic sequence type. - 1000
expand_5prime Int Expand the sequence upstream of the sequence by this many basepairs. Only available when using genomic sequence type. - 1000
format Enum(fasta) Format of the data. - fasta
mask Enum(hard,soft) Request the sequence masked for repeat sequences. Hard will mask all repeats as N's and soft will mask repeats as lower cased characters. Only available when using genomic sequence type. - hard
mask_feature Boolean Mask features on the sequence. If sequence is genomic, mask introns. If sequence is cDNA, mask UTRs. Incompatible with the 'mask' option 0 1

Message

Content-typeFormatExample
application/json{ "regions": array }{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }

Example Requests

/rest-19/sequence/region/brugia_malayi_prjna10729


 [
  {
    "query": "Bm_v4_Chr2_contig_001:13847151-13862157:1",
    "seq": "AAAAAAATGATTTTACAAATCCTGCAATTTCAATTTGTGAGTAACAGCATGGAAAAATGTTATAATGAGTAAAGCTGATGAACACAGTCATTGGGTTAGATATTATAAAATGAAAAATATATATATATATATAATTTGATATGCACATGCAAATACTTTTTTGAGTGCTAAAGGTGTTAATTAGGAAGAAGTATAAACATAAAATAGCACCAATTTAATTATTATATGAAAGAAATTAATTTGAAGAACAGAAGAAAAGAAAGCAAATAATCAGAATTAGAAATGATTAAATGAAATACAATTAAAATGCTAGCAACACTTAAAGACAAAAGTCTAAAATAAGCCAATATGTTTGTAATTAATACTTAACTAAAGTCATCGAAAAAAACGAAAAATTTCAAAAAATGGAAAGAATGCTCACAAAAGAGAAATAGGATTATTCATTGTTGTACAGATTAATCACTGATAATAAATGCAACTTGCCAGTTTTAAATTTATGCTAATCTCAGTATTATCGTACACCGTTTTTAATTTTAAATTGTATTTTTAAAGTTGCAATAAAAATTATCTGAAATAATACTAATCGAACAAAGTTAAAAATTGTTTAAATCTTTGGTCTTATAATTCCAACCAATCTGAAATAAAAAACATTCATCTGAGCTTCTACCATTTCTGAATATTCACAAAGCTCTCGGTTACATCGATGGTACAAATTGTTTGGTTCAGTCTTCTGCTTTGCATCTTTTGCGTTTCGGCTCAGAGTGGTGCGTTCTCTTTCTTTGCTCTTAGCAACCGGTGCTGGTAACCCATGACAGGAAGTTATTTTTGTTGATTTCTACCAAATTTCATTTTTCAGATGATTCATCGGGCCAAGATTCACGAGATCAACAGAATCAATCAGGTAATCAGGAATTGGAAGAGGATGATATTCCAGATGACTTCGAATGGTTATTATTTGGTTATAAAAAGCCAACGCAATCATCTACTGTGAAAGCCCCTTCTATAAAAGGTAGCATTAAAACTACTTTTCAAATATAAATCTAAAATAGATCAAAAGGGTTTTCTACACCATATTAATTGGAAATGAATTTTAAATTTTAAAATATGCTTTTGCAGCACTGATCTTATCATCGTCACTTTCAAGTGACATCATTTAATTAACAAATTGTGTGATAGTTGAGTGTAAACAGAAAGCTCATATCAGATCAGAAGAAGTATGAATGCGGTTTTCCGGGCTGTGATGCAAGCACTTGGGACCGAAAGGAATATTTGAGACACATCATCAAGCACAATCAACCAGGCCTTTATCGATGTAACTGGCTTAGATGTAAAAGTGAATATCGATGTTTATCAGCACTTCGTCAGCATTATCAAAAACATCAATCTAAATTTGCATGCAAAAAATGCGGTGCTTCATTCTTCTACAGGTCTTTGCTAAAACATCATACCGATTATTGCAGCAAAGGATGCAGTTAGTTTTGCTAATTTAAATTTAATTTCAACAAATTCATTTACGTGGAATAGAACACACGTAAACGTAAAAACGTGCTCCTAGACATTTATGACGGTGGAGTAGTAATAGAAAACTGTATGATATTGCAATATTTTTTAATCGAAGTAAAAACTATCGTTTGTTTTGCGTCTAGAGCAGTTAGTTCATAACAGCTACCAATTCATAGTCCAAATAATTTAAAAAATTTTCCTCAGTTGAAATCACACCGATAAAGCTGAGTAAAACTAACAGAGAAACGAATGCTGTATTTCCTTTGATTTTTTAATACGTGAAATACATGTAGAAAACATATTTGTGAAGTTAAACTGTAGTGAAACAAATGTCATATTAGGAATTTTTCAGGTAATTCCATTGTTTGAGTGTCCCATTCCTGGGTGTTTTGCAAGCATAATAGAGCATAAATTTCCACAACACCTCGAAACACATAAGAAAAATGGTTTCTACAAATGCAACTGATTAGGATGTGAAATGAGTGTTTTTATTTGTCACACCTTTGCAGATACTACCAGCAACATCAACCTGAAAAGTTTAAGTGCAACTACTTCGATGCAGTTTAAGGACTTACTAAAACGTCACATGGATAATCACAAAACACGCCGTTAGTTTCGCAAATTTATTTAACATCAAAAGATTTCCAACAAGTTTGTCAACGTAAGATGCAGCATACATGAAAATATGTTTATGGAATTTACGGTCGTGAAGTGGTCATAAATGTCGTTAAAAATAACGAAATAACGCAGTGGATGCACAACCAATTATCTAATAATCAAATGAGAAATACACTTCTTTTCAGGTTTGAAGTGATAACTCAAAAATGTTCATTTTAGGTCGAATGGAAAATTTGCAGTTCGGACATGCTTTAGTAAACACACAAGAAGAAGATGTATCTAGTCAAAGCTATAATATTCTCGACGATTTCAATTTGGCATTGTTCGATTCAGGTAAATGTTTTATAAAATTTTTATTTCTCTTGTCGTAATGAAGTGACATCTAAAAAATGTTTATTCCAGGCTCAACGGAAGAAGACTTGCAGTTAAAACATAGTTCGTTAAACACCGAAAAAGAAAATGCTCCTAGCCAAAGCTATAATATTCTCGACGATTTCAATTTGGCATTGTTCGATTCAGGTAAATGTTTTATAAAATTTTTATTTCTCTTGTCGTAATGAAGTGACATCTAAAAAATGTTTATTCCAGGCTCAACGGAAGAAGACTTGCAGTTAAAACATAGTTCGTCAAACACCGAAAAAGAAAATGCTCCTAGCCAAAGCTATAATATTCTCGACGATTTCAATTTGGCATTGTTCGATTCAGGTAAATGTTTTATAAAATTTTTATTTCTCTTGTCGTAATGAAGTGACATCTAAAAAATGTTTATTCCAGGCTCAACGGAAGAAGACTTGCAGTTAAAACATAGTTCGTCAAACACCGAAAAAGAAAATGCTCCTAGCCAAAGCTATAATATTCTCGACGATTTCAATTTGGCATTGTTCGATTCAGGTAAATGTTTTATAAAATTTTTATTTCTCTTGTCGTAATGAAGTGACATCTAAAAAATGTTTATTCCAGGCTCAACGGAAGAAGACTTGCAGTTAAAACATAGTTCGTCAAACACCGAAAAAGAAAATGCTCCTAGCCAAAGCTATAATATTCTCGACGATTTCAATTTGGCACTATTTGATTCAGGTACGGGCACATATGGAAATACTAATGAAGTATCATTGTGAACTTATTTTAGAAGAATTTATTTTTAATATTTCATCCAATCGCTTGGAGTTTGATTGTTAATGTCGTGTAACATTACTTGATGATAAATACACTTTTTTAAAAAATTTTAAACAACCGCATGTATTTTTCTTGACTGCAAATACTGTGATTTTGACTTTGAATATCATTCAGACTGCAACGCAAAATTGCTATCATTTACGAAAATATTTTGAAGTAAATAATAAAAACTTTTAAGTCATTCAAAGAATAGAAGCAAATAGATAACTCATTTTTGAAAACGTTTGTAAAAATTGGCTCATTTTGATAGTCAATAGTATTTTAGGTTAGAACCTGAAAAAGTGTTTGAGCTATCAAACGAAAGACAAAACCCTGACAAATCGATTTTGTAACATGAATAAACAACTTATAACACTTTTGCATCCCAAATGAGAAACTTAGTAATTTTTATGAAATAAAATTTCGAAGCAAAAAAAAAAAAAAAAATAAAGAAAAAGCATTTGTAAAAATGATCTGATATCCTTTTTCGTTGAAGCACAGCTGTGTTAACTTTCCGTAACCGAATGAAATGGAATGAATGACTCAGCTGTAGAAGTCAACTTGGCAAGAAGCTAAATGTCATCATAAAGGTCAGTGTGTTTTGATGCACTCCCACAAATGGAATTTAGAATAATAGAATAATTTTCTCAAAAACAAAAAAAAGCGCACATCTGCCGAAAGGTACACTTATTATTCGAATATATAAGAGGAATCAATTTTCTGATCATTTGATCTTATCATTTCTTTATCACCGCTTCGAATAAGACTGACAAATTAGTAGGTTCTTTTTTATGAATAATTAAAGATTACTATTAATTCGTGATTGAGTTACTTCAATGTGAGTTTTACTTCTAAAAAATGTGATCTTTGGACAGTGGACTGTTTTAAAGAAAAAAATCATAAGGAACAATGCTTGGAATTAACTAATGGATAGTTGGAGCGATGGAAGTAGAAGCGATATTTTATTTTGGCTTGCAATAACTTACTTTAGCGCAATTTATGCAAATGCGATTAATATTTGGTTGTTTTTGCAGGAAGAGAAAATGAATAAACTTTTAATAGCATTCGGTTTGGTAATTCTTTTTGTGACACTTCCGTGTGCATCAGAATCAGACGAAGAGTTCGATGTAACTTTTGCAAATTTATTAAAGAAATAAGAAACCACTATGTTAACCAAATCACTAAATCGACAGTAGTAGTACAGACCTAGCCAGGTCACGGGATAGTACGTGAGACAAACTGATAAGCAGGTGGTAACGTGGAGCTCTTTCGAGAAAATGACTTATGAGTTGACTGAAATGAGACATAATGCAGGACTTGAATTGCCACCATTTCTTTTCAAATCCATCAAAAAGAAAATATTTTTTTTAGGACTCCGCAGCCGATGACACCGACGACAGCGAGGACGGAGGTGGTAGTGAAGGAGGTGATGAATATGTAACCAAAGGGGAATTTGTTGAAACTGATGGCAAGTGAGTCGTTTGGTACTTTCAATAATTTGAATCCTTCAAAATATTTCTGAGGAATCGGTTCCCTTTCCATCTCACTTTTTATGGGTCCTTTTATTAAAAATGTGTTATTTGTATCGCTGCAATCTTTCATTTCGCTCTGAAATAGTTATTTCTTAAATTGACTCCAAAATGTTCCATATCAATGTCACACATTACCTTACTTATGAAAATGTCACACATTAACTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACCTTACTTATGAAAATGTCACACATTACTTTACTTATGAAAATGTCACACATTACCTTACTTACGAAAATGTCACATATCACTTACTTAGGAAAAAAGTTCACAAATAATACAAATAAAGAGCTCACCTCACTTTTCCATTCGATTGTTTGCAGAAAGAAAGAGTGCTCTTCGCACGAAGCTTGCTACGATCAACGTGAACCACAAGCGTGGTGCAGACTGAGCGAGAATCAGGCATGGACGTAAGCCACTTCAATCATTTCTTGCGGAAATTACTTCTCAGTGTTCCTCAAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAATGTTCCTCAAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTCCCTCCCAGTGTTCCCCACAACTGTCAACGCTGTGTCCCCACTTCTTAATAGCACTAATAAGTCATATTTCAGTGACAGAGGCTGCTTCTGCGAAGATAAGTTGCATTCGTGCGTCATCGAAAGAACGAACAATGGTAAATTGGAGTATTCGTACTGTGCACCTGAAGCAGGTTGGCAATGCGCATAGGACTGAATCAGTCTTTGATACTACCAACTTTCCATCCATTTCTTACACTTTTCAAATTTAATTCTTTCTAACAAATAACATTTAACTTTGGTTTTACCGCTATTTTATTAAATATTGGAAATATGTGCGACAATCAAATATGTCACATCACATTACATTGTGTCACAGATTTCTATTAAAATCTTTAATGTAATATTATTTTAATAAAGAAAAGGAAGAACGAATAAACTATATTATAATGGACTATAATAGTTGCATCAATAATCAATTCTGTTAGCTGATTAATATTTCGAATATTACGCATATGCAAATCTAAGAGACTTTTTTATTTTCCATTTATCATTTTGTAAGTGTGTGATTAATGGCTCATTGTAAATTATTTTGTACTATTTTATAAAAAGGAAATGAATGAAACGATAAGAAATATAAGTAAAGTTTTATCACAGAATGCAAAAACTGTCACTGATAAAAATGTGGCATATAATATATAAACTTTTATGGTTTTTTTCACTATTTCACTTCATTTGTTCTCACTAAATTTGACAAAAAACAAAAATGGCGATAAACATTTGTAATTTAGAATAATTGCTTCAATCTATTCATCGATTAGATATTCATATCCAACCGAAATAAACTCCTCTGCAATTGAATAGCATTACGGCTAATTGCAGATGAAGTACTTTTCAAAATGAATGATCAAACAAGAAACTGTTTGGTAGTTTATTTTGGTTCAAAAGGTTCCTACAAGAAAAATAGCACCGTACTTACCAACCTCAACGTATCAGTGGAACGCATCCCGCATAAGTACCTAAGCCATTCCTTGGTATCATCTATTCAATACAAATCAATTAAGATCATGAGAAAAAGGTCTAAATAGAAGAAAATTCAGAAAGAAATACTCAAAATATGCTAACAAATGCTTTTTATAATTTATAGTTAACTGATGTTATCAGTATGATCAAAAATTAAAAATCAAAAAAAAAATACAAATTGAGTATTACCACTTCAATGCCACTTCAATCACTGTTGAATTGGTCATCGTCAATTATCCGTCAATTTTTTCATTTATGCAAAAATTTTCACATAATTTCATAAAAGTGCGAATACAAACAGAAATGATCAAAAATTAAAACTGACCTTATCATAGCAGAAAGTTGACAATTGTCCATTTTAGGTGGTCATTTAATTAATGCTGTCATTAAAATAAGCTTACAAAACAAAGTGTTCCGAACTAATAAATTGTGTTAAGTTTAATTTATTGTACTGTTATTTTTGTGATCACAAATGTCACATTAATTAAAAGCTATTCTTTCCTTTTCTTTATCTTTCACTGATATGCTTGATTATCTGTGACAGATGACACACACCAAAAAGCATAGTATTAGCAGCATTCACTCTTAATTGTTATATCTTTTGGCTGCAGTTAGCTTATTTGCAATTTGCAAGGGTTATAGTTAGAATTTCAAAAAAAAAAATGAATTTATCATCGTCATTTCTAGGAGCATTCGCTTCCAGTAGTATATCGTTTGATTTTTGATCTTTCATCGTTAAAATTAAATCCAAACGATAGTCGAATAATACTAACCATTAACTAGAATTTGGCATTGATATCATTCATTTCTCTTTTTTAAATTTAAAATTTTTGTATTAAAGAAAAAAAGAGACAAATTTAGCAAATATTAACTAAAAATGTTATTTTTGTTTTTCTGTTTACATTTAACAAGTTATGCATTACAATTATATTATCTTACTGTTTTTTTTTTTTTTTTTTTTTTGCATTTTAATTTTATCACATTATTGCTGAAGTTTTTATCACTTCAAAAAATTATTATCACTGCAACATCTATTATCATAATTTGCTTGCATTTAGTTACCATTTATTAATTAATAAAATAAAAGGACAAAGACTTTTTCCTCATTTTTGTTTTTTTTTAAATCAATCAGTTTAAGATAAATGATAAGATATGTTATCAGTTGTACATATCGTCAGCTGTTTCATAAAATTATACTCATCAAAAACATTCAATCATGATCATTTTATGTCAGATTAAAAGTTTATGATTATTTTGATAACAAATCAATCAATAGCTGATAATAATGCAATTGATTTATTTTTTTTAATCATATGCCAAATGAATTAAATACTTATTTATTCTTTTTTTTTTTTAAAATTTGTTTTTTCTTTTTCTTTCTTTCCTTTTTTTTTTTTTTTTGCCTACTTCTTACGGAATTTGTTTACCGTCAAAATTTTACGATTTGTAAAAATATTTTACCATCAATGACAACTGTCTCTATTTTGCAATGTATTGTAAATATTCACTCCTTTTTGTTTTTTATTTTTGTTTTTCTGATTTTTAATTTGCAATAATATTAGAAATGACAAGGAGTTAAAATTGATGAGGGATGTGTTATGATCAAATAACAAAATAATTTACTCATTGCTTCACATTTTTAACTTACTACTCACTTCTTCTTCTCTTTTTTTTTTTTTTTGCTTTATCATTTTTTATCATATGTTTAAAAATTAATACAATCGATTCGTCTCTTAGTTTATTTTAATTGATAATTTAAGCAATTCATTCTTCTCATAAAAATTTTTTAAATTTAAGATGATTTTCGAAACATTTCCAATTTATTAAGTAATAATAATAATAATAATAAACAGTAGTATTATTAACTAATAAAATAGTGGTGAATTAATTAATTATTAAAATATTATATGTTGTACAATACTTATACGTTTGATCCTTTTTCTTATGTACAACAATAAATTACATATGAAATAGTTTATATAATAATAAATTGTATATTTAAAAAAATATTAAATGCGTATTCAAATGTAAATTGAGCGTTAAATAATTTGTTATCACCAATTTGTCGACAATTATTTTGTTTTTTTTTAATTACCATTGTTTACTGATTAATTTTCTACTATTTATGATTATCGTTCATCACATTTCATTTATCATTTTAAAAAATTTAATCACTTATACACAAATGAATGGCATTGACAAATTATTAATATAAGTAAACTTTAACCTTTCTGATTGTAAAATATAACTATTTTTTAAACTGTTCTTTTTTGTTGTTTGATTTTCTCAATTTCAAAATTTTGTTTATTATAGAAGATAACAACTCCTGAATACCAATAAATATTTGGGTAATGTTTTTCAATCGAATAGCAAATCGATTATTTGTTCATTATTCTGGTGGTGGAATTCGATTAAAAGTGACACCAACATTCCTGTCACTTTCCTGTCACTCAAATGGTATTTGTCTTCATCGATGCTACGTTATTGTAAACATAAAGCGATCAAAGATTTTCAATTCTACGTCAAATCTGAATCGAAATGTAACGACAACAGTTAATGCAGATGATAAAATTATAGCAATTCAAGAAGTAGATTTTATTTTTTTTTTTAAATAATAATTTAAAAAGTTTTTGATATTTAACAATTTGCATTATAACCTTACTATGTAACAATAATTTGATTTAAATTAAAGGCAAATAAAAAAAAAAAAAACTTTTATTATCCAATAATTTTGATTCAAATTAAAGATAAAAAAAAAACAGAAAAAAAACCAAAAAATCTGAGAAAAATAACAAAATTACTGGAAGAAATTTTTGATAAAATCTAATCACTATTAGATTATAAAATTTTTACGCAATTAAAATTGTAATCTTAATTATATCAGTTCAGGTGACAAGGTATATGATACAATGTATGATAAAAACAGGTACATCAGAAAGTCATGCTAAACAATTAGCTGATGTACTGGTAGCAGCTGATATAAGAGGACATTACAGTCATGGATTAAATCGATTAGGTTTCTTTTAATTGATGATTTCTTGCAAATTTTAAAAAATTATCGAATTTTAAAATAAATCAAATAAAATAATAAATTCTATTAAAATTTATTCAGTTCGTTCAATAAATTTATAAAATTTTTTTTTAATTCGCTTTTTTTTAAAAATAAAAGTTAATATTACTTGAATATATAGCAAAATCTATATCAATTTTTTTTAATTTAAATTTTTAGTTCATTTCATATTGTTTTATATTCAAGGTTTTTTTTTTTTTTTTTGAAATACAATATAACGGTGACACATACTTTTAACCATAGCTTTATTTTCTAATTTTTTAATGGATGAAGATTTCAAATGATCATTTTTAAAACTTTGAAATAGGACAATGTAAAATAAATTATGAAAAATTTTATGAGAAAAGCTGAACTAAGGTGACAGGTAGGTATCTGTCATCATATGTCGTCTGATTCAAAAAAAAAAAATAAAAATAAATACATTTAGGTATGTATGTTCGCGATATACAGGAAGGTATATGCATGAAAGATGGTGTGCCGAAAATTCTCAAAGAGAATGCCGCAAGTGCATGGGTTGATGGAAATAATTTACTTGGCCCAGTAGTTGGCAATTTTTGCATGGATATAGCAATTAGAAAAGCCAAGGAAGCAGGTGTTGGCTGGGTTGTGGCTAAAGGTAAATTAGTGCAGTAATTGAAGATTTAATTTAGCTCAATATTTAATGAAATATGAAATTATTTGGCTATTATGATAAGAGTTTTTTATAAAAGTAAGTATTACTTTTATATTTGTAGCATATTCTACAGTGATTTTCTCTTAAATTACATCCGACTGGTTCAATTTTTCCTTATTTTTTTAATATTGAATGTAATTTAAAACTGATAGCAAAATTTCAATTCAAACTGAAATACTCGAATTTTATTTGCAATTACTGATTTTGAAATAAGTTCGCACTTTTTTTGATTTATTATTCAAAAAGTTTCATTTCTTCTAAATTTAAATAATGCATTATCATTTGCTACATAAGTGACAAATGAGGAGTAAAATTTTCTTAAAATGAGAACTAAAATTATTTAAATTTAGAAGAGATGATATTATAATGAACATTATAATATCAAATTAAGAAATTTAAAAAAAAAATCATTTTTGACTTTTCGAATATTTTACTAGGCTCATCTAATTATGAATTAAACTATAATAAGTTCAACTGATTTGAATATTTTTATCATTTATGATTAAATATTATAGGATCAAATCATTTTGGAATTGCTGGTTGGTATAGTATTCGTGCAATGAATGAAGGACTTTTAGTTATTACTTTTTTTTTCCTATTTTTTTCTCCTAAAGTGTAACTTTAAATTATTATATAACAAAAAAAAAAAAGTTAAAAACAAGAAAATAAATTTATATAACACAAAAATTAATTTTATTTTACTCAATTCATTCTATTTTTTCTTTTAAAAAAATATATAATTTTTTTAGAAGAAAAAAATGACAAAATAATTGATACAAATTTAAATTATTCTATTAAAAATTAAAATTTAAATATTTATTTTTTTCGTTTTATTTCAAATATATTTGAAGGGGATGGCATTTACAAATACATCGCCAATTATGTATCCAACTAGGTCAAGTGTCGCAGCACTTGGGACAAATCCTTTGACACTTGCTGCTAAGGCTAAAAATGACACATTCATATTGGATATGGCCACTACAACTGCTGCTATTGGAAAGGTTCGTTATTATTATCAGTTATCATATCACTAATTATCACCACTATCATATTTATTATACTGTTATATCTTTGATAAAGCGTAAAAAAACTTTTGGAAAAAAAATGAAAAATTTTTCACAGCAACATATGTTATTAAATATAATTAAAAAAAAAAAATTTCCAAATAATTCGTAATTTTTTTTTTTGTTTAGTAAGTTTTTTAGGTTGAAATAGCAGCACGTAAAGACCAAACTGTTCCGGATACATGGGGTGTGGGAAAAAACGGCTATGTTAGCAATGATCCGGCAAAAATACTGGATGGTGGCGGTCTTTTACCTCTTGGCGGAAGTGAATTAACCGGTAAATTATTTATGTATGACTGGGTGGAATTTTTTAATCAATCATTTATTTATTGCAATGATTTTTTTATAAATTAATTTATATTTTTAATTTTTTAATTTATTCGGTATAATGCAAAGAATTGATCCTTTTCCTTTTTCTGTTTTTTAATTAATAACTTATTATATAATTATGATTACTACTATAAATTAAAATTAATAAGCATTGATCAATTATTTGCAACAGAATAATGCAGAAGAATTCTTTCTTTTATTTTTAGATTATTAATTAAAATAATTAATGAATTTTTTATATGCTTTGAGCTTTTTCTTTTTTTTTAAAAAAAAAAAAAAAGAAGGAATTAAATTGCAGGTGGCTATAAAGGATATTGTCTTGGTGCATTAGTGGAAATTATTTGTGGCGTACTTGGCGGTGCGCAATGGGGACCACATGTGAGACAATGGATGTCAACAGCTGTTATTGCTAATTTAGTAAGGAAAAAAACTTTTCAAATGAATAAAATTATTTTAAAAGTCTTCGTTCTTTCTTTTCATTACTTTTTAATAATAAAATTTGTTGTGTGAAATTTAATTTTAAGAAATTGCAAAATAATTTTTAACAACTAATTAACAATATTTTACTTTTTTTTTTAGGGACAATGTTTTATTGCAATTAATCCAAATGAATTTGCACCAAATTTTGAAAATCGTTTACAAGAATTTATTGATGCAATGCGAGGATTAAAATCGGTTTATTTTTAAATAATATTACTCAAAATTTATTTATTTATTTTTTCGCTACCCTCTCATTAATAATTTGATTTTTTGGAAAAAAAACTTATAATCAATTTTATCCGTCGAAAAAAGGACAAAAAAACAAAGAAGCGAATAATAAATTTTCGAAATTATTCTATAAAATATGAAAATTATTCTACTCTTTATTTTATTTAAATTTTTATTTTCTATTTTTTTTTTTTTTTTTGTTTTTTTAAAAAAAAAAACCTTTTGTGTAATCCTTTCAATTATTATTTTTCTTACTAGTTTTCTTTTTTAACAATAAAAAATTTACTTTAAATAAAGTAATTTTCATTTCTCTAATAATAATAATACTAATATTTCTAATTAGCAAGAAAAAATTTTCATTTTAATTTTATATTTACTAGTATAAAAGAAAAAACATTTTTTTTTTGTTTACAGGTTGATAATAAACAAGTATTAGTAGCTGGTGATCCAGAAAACGAGCATATAGCATTGGTGGAGAAGTACGGTGGCATACCGTACCACCCAAATCAAATTAATTATGCGGTATCAAAAATTATCTCATCACTATTTTCTTTTTTTTTATTTTCTTTTGAATTTAAAAACAAATTTAAAAAAAAAAAAGAAAACATTTCAGGAAGAATTAGCTAAGACATTGGGCGTATCAGCAATGATTACAAAGAGTACCGTGTAATTGTGTTTATTTTGCATAAATATGCTAATAAAAAGAAGGAAAAGCATGGATGATCTCTTACATTTCACTTATTGCATTACCGATATTAATTAATGGGTTTTTTCCTCTTAGTTTTATTAAAAGATTTTAATTTTTAATTTTATTATAGTTCGAAATAATAAATTACTACGTTTGTAAAGGAAGATAAAAGTTAATTAAATGAATTAATCAATAAATGTATTTTTTACTTATTATTACTTATTTTTTCATCTTTTAAAATTCATTTTTTTGCAAACAATAAAGAGAAAAAATTATAATTTTATCAGTTTAACATAGTAATTGAATTATGGAAATAAGATTCGATATTAGATTTTCTTTTTTCATTTCTTTAAAATTTCATTTATTCTAACTACAAATGATCAAGCATTACTAATTTAATAATAAAAATAGATTTTCAGTTAACTGTAAATTTTTCATTTTATTTCAAAAATTCAATCTAAAATTAAAAATAATAACAAGTATTAAATTAACTTATCATTAAATATATTTATTTCACTGCTACGGGTGCTAAAATTAAAATGAATATTATTTTTTATTTTCATCTTTTTGATACATTATTGAATTTCAAAGAGAATGAAAAAGTAAAATTTTATCAAATATTGAAAATTGAAATTATCCAAATGTTTAAATCAATTAATAATTTTTTTTTATTTTTAAGGCTATTAGTATCGCATAATTTTTGCTTATTTTTTGTAAAAAAAAATTGACAGATCGTAAAGAAAAGATAATATAAAAAATTTAAAAATTAGATAAAATTATAAAAATGTAAAAACGCAAAAAAAAAAGTTTATCGGAAGAAAATAAGAGATAATATAGGATTTATACTAATAATTGATAATAATTTACAAATTTCTAAACAAAAATAATAATGCAATAATTTCAAAAATTTAAAGCAGTTTTTACAAGTTAACGTTACTATAATTTAGCTTTCTAATAGATTTGAACAATTACCAAGATTTTATGATAATTTTTCGTTTTCATTGTTAATTTTTGAAATATATACATTGTACTAAAAATTTTTGACATAAAAAATAAATATTCAATGTAAACTTTGCTGTCTAATCATAGATAATTTTTTATCAAGAAATACTTTTTATCAATAAATATTTTATCAATGAATGTTTGATTTATTATACGACGTAAAATGTTTTTAAAAAATCGATTTGTAGTTGAATGCAATAGAAATATGCATACTAACATTCAAATTTTTATTTTTCTTTAAGTTTATAAGAACTTAAAAAATGAAATTTAATTTAATTCAAAACTTCCACGTTAAATTTTATCCGAAACATTAGTTGAAAATAGATTAGTAAAAATATTAGTAAAAACTTTTTAATTTTGTTAATGTTGAAAAATTGAATTGAAAAACTGAATTACACATATAATAAATGATTAAATGACATGAAAAAGAAATTATTATTGGATTTTTAATCGCTTTGA",
    "molecule": "dna",
    "id": "supercontig:Bmal-4.0:Bm_v4_Chr2_contig_001:13847151:13862157:1"
  }
]
{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }
        
  1. use strict;
  2. use warnings;
  3.  
  4. use HTTP::Tiny;
  5.  
  6. my $http = HTTP::Tiny->new();
  7.  
  8. my $server = 'https://parasite.wormbase.org';
  9. my $ext = '/rest-19/sequence/region/brugia_malayi_prjna10729';
  10. my $response = $http->request('POST', $server.$ext, {
  11.   headers => { 
  12.   	'Content-type' => 'application/json',
  13.   	'Accept' => 'application/json'
  14.   },
  15.   content => '{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }'
  16. });
  17.  
  18. die "Failed!\n" unless $response->{success};
  19.  
  20.  
  21. use JSON;
  22. use Data::Dumper;
  23. if(length $response->{content}) {
  24.   my $hash = decode_json($response->{content});
  25.   local $Data::Dumper::Terse = 1;
  26.   local $Data::Dumper::Indent = 1;
  27.   print Dumper $hash;
  28.   print "\n";
  29. }
  30.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/sequence/region/brugia_malayi_prjna10729"
  5. headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
  6. r = requests.post(server+ext, headers=headers, data='{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }')
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12. decoded = r.json()
  13. print repr(decoded)
  14.  
  1. import requests, sys
  2.  
  3. server = "https://parasite.wormbase.org"
  4. ext = "/rest-19/sequence/region/brugia_malayi_prjna10729"
  5. headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
  6. r = requests.post(server+ext, headers=headers, data='{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }')
  7.  
  8. if not r.ok:
  9.   r.raise_for_status()
  10.   sys.exit()
  11.  
  12. decoded = r.json()
  13. print(repr(decoded))
  14.  
  1. require 'net/http'
  2. require 'uri'
  3.  
  4. server='https://parasite.wormbase.org'
  5. path = '/rest-19/sequence/region/brugia_malayi_prjna10729'
  6.  
  7. url = URI.parse(server)
  8. http = Net::HTTP.new(url.host, url.port)
  9.  
  10. request = Net::HTTP::Post.new(path, {'Content-Type' => 'application/json', 'Accept' => 'application/json'})
  11. request.body = '{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }'
  12.  
  13. response = http.request(request)
  14.  
  15. if response.code != "200"
  16.   puts "Invalid response: #{response.code}"
  17.   puts response.body
  18.   exit
  19. end
  20.  
  21.  
  22. require 'rubygems'
  23. require 'json'
  24. require 'yaml'
  25.  
  26. result = JSON.parse(response.body)
  27. puts YAML::dump(result)
  28.  
  1. import java.net.URL;
  2. import java.net.URLConnection;
  3. import java.net.HttpURLConnection;
  4. import java.io.BufferedReader;
  5. import java.io.InputStream;
  6. import java.io.InputStreamReader;
  7. import java.io.IOException;
  8. import java.io.Reader;
  9. import java.io.DataOutputStream;
  10.  
  11.  
  12. public class EnsemblRest {
  13.  
  14.   public static void main(String[] args) throws Exception {
  15.     String server = "https://parasite.wormbase.org";
  16.     String ext = "/rest-19/sequence/region/brugia_malayi_prjna10729";
  17.     URL url = new URL(server + ext);
  18.  
  19.     URLConnection connection = url.openConnection();
  20.     HttpURLConnection httpConnection = (HttpURLConnection)connection;
  21.     
  22.     String postBody = "{ \"regions\" : [\"Bm_v4_Chr2_contig_001:13847151-13862157:1\", \"Bmal_v3_scaffold139:57600..85000\"] }";
  23.     httpConnection.setRequestMethod("POST");
  24.     httpConnection.setRequestProperty("Content-Type", "application/json");
  25.     httpConnection.setRequestProperty("Accept", "application/json");
  26.     httpConnection.setRequestProperty("Content-Length", Integer.toString(postBody.getBytes().length));
  27.     httpConnection.setUseCaches(false);
  28.     httpConnection.setDoInput(true);
  29.     httpConnection.setDoOutput(true);
  30.  
  31.     DataOutputStream wr = new DataOutputStream(httpConnection.getOutputStream());
  32.     wr.writeBytes(postBody);
  33.     wr.flush();
  34.     wr.close();
  35.     
  36.  
  37.     InputStream response = connection.getInputStream();
  38.     int responseCode = httpConnection.getResponseCode();
  39.  
  40.     if(responseCode != 200) {
  41.       throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
  42.     }
  43.  
  44.     String output;
  45.     Reader reader = null;
  46.     try {
  47.       reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
  48.       StringBuilder builder = new StringBuilder();
  49.       char[] buffer = new char[8192];
  50.       int read;
  51.       while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
  52.         builder.append(buffer, 0, read);
  53.       }
  54.       output = builder.toString();
  55.     } 
  56.     finally {
  57.         if (reader != null) try {
  58.           reader.close(); 
  59.         } catch (IOException logOrIgnore) {
  60.           logOrIgnore.printStackTrace();
  61.         }
  62.     }
  63.  
  64.     System.out.println(output);
  65.   }
  66. }
  67.  
  1. curl 'https://parasite.wormbase.org/rest-19/sequence/region/brugia_malayi_prjna10729' -H 'Content-type:application/json' \
  2. -H 'Accept:application/json' -X POST -d '{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }'
  3.  
  1. wget -q --header='Content-type:application/json' --header='Accept:application/json' \
  2. --post-data='{ "regions" : ["Bm_v4_Chr2_contig_001:13847151-13862157:1", "Bmal_v3_scaffold139:57600..85000"] }' \
  3. 'https://parasite.wormbase.org/rest-19/sequence/region/brugia_malayi_prjna10729'  -O -
  4.  

Resource Information

MethodsPOST
Response formatsjson
jsonp
Maximum POST size50
Slice length1e7