Echinococcus granulosus - public RNASeq studies
Table of Contents
Analysed
ERP004459: Analysis of RNA expression in tapeworm species
Wellcome Sanger Institute
Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Gene expression (TPM) per condition as median across replicates
Design: 2 conditions
Condition | num. replicates | Developmental stage | Organism part | Strain |
---|---|---|---|---|
Metacestode, cyst wall | 1 | metacestode | cyst wall | G7 |
Non-activated protoscolex | 3 | Non-activated protoscolex | G7 |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP001209: Cestode transcriptomics
Wellcome Sanger Institute
The main objective of this project is to recognize genes expressed in the life stages and tissue types of a variety of different cestode species, including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma, H. nana and others.
SRP044131: Transcriptome analysis of mRNA and microRNA in the cestodes Echinococcus granulosus and Echinococcus multilocularis
SRP131874: Echinococcus granulosus strain:G1 Raw sequence reads
LNCC