WormBase ParaSite HomeVersion: WBPS8 (WS256)

Downloads

A number of downloads are available for each species:

GenomicRaw FASTA genome file
Masked GenomicGenome FASTA with repeat regions hard-masked
Soft-masked GenomicGenome FASTA with repeat regions soft-masked
Annotations (GFF3)GFF3 file containing all annotations
Annotations (GTF)GTF file containing only the canonical gene set
ProteinsFASTA protein file
mRNA TranscriptsFASTA of the spliced full-length transcripts
CDS TranscriptsFASTA of the spliced CDS-portion of the protein coding transcripts

Data for previous releases can be found on the WormBase ParaSite FTP server.

When using data from WormBase ParaSite, please cite both this resource and the original paper for the genome. Full details are available in our Data Usage and Citations guide.

SpeciesBioProjectGenomicMasked GenomicSoft-masked GenomicAnnotationsProteinsFull-length TranscriptsCDS Transcripts
Acanthocheilonema viteaePRJEB4306FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ancylostoma caninumPRJNA72585FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ancylostoma ceylanicumPRJNA231479FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ancylostoma ceylanicumPRJNA72583FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ancylostoma duodenalePRJNA72581FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Angiostrongylus cantonensisPRJEB493FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Angiostrongylus costaricensisPRJEB494FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Anisakis simplexPRJEB496FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ascaris lumbricoidesPRJEB4950FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ascaris suumPRJNA62057FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Ascaris suumPRJNA80881FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Brugia malayiPRJNA10729FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Brugia pahangiPRJEB497FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Brugia timoriPRJEB4663FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Bursaphelenchus xylophilusPRJEA64437FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis angariaPRJNA51225FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis brenneriPRJNA20035FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis briggsaePRJNA10731FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis elegansPRJNA13758FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis japonicaPRJNA12591FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis remaneiPRJNA53967FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis sinicaPRJNA194557FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Caenorhabditis tropicalisPRJNA53597FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Clonorchis sinensisPRJDA72781FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Cylicostephanus goldiPRJEB498FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Dictyocaulus viviparusPRJEB5116FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Dictyocaulus viviparusPRJNA72587FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Diphyllobothrium latumPRJEB1206FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Dirofilaria immitisPRJEB1797FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Dracunculus medinensisPRJEB500FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Echinococcus canadensisPRJEB8992FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Echinococcus granulosusPRJEB121FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Echinococcus granulosusPRJNA182977FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Echinococcus multilocularisPRJEB122FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Echinostoma caproniPRJEB1207FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Elaeophora elaphiPRJEB502FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Enterobius vermicularisPRJEB503FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Fasciola hepaticaPRJEB6687FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Fasciola hepaticaPRJNA179522FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Globodera pallidaPRJEB123FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Globodera rostochiensisPRJEB13504FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Gongylonema pulchrumPRJEB505FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Gyrodactylus salarisPRJNA244375FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Haemonchus contortusPRJEB506FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Haemonchus contortusPRJNA205202FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Haemonchus placeiPRJEB509FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Heligmosomoides polygyrusPRJEB1203FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Heligmosomoides polygyrusPRJEB15396FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Heterorhabditis bacteriophoraPRJNA13977FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Hydatigera taeniaeformisPRJEB534FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Hymenolepis diminutaPRJEB507FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Hymenolepis microstomaPRJEB124FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Hymenolepis nanaPRJEB508FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Litomosoides sigmodontisPRJEB3075FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Loa loaPRJNA246086FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Loa loaPRJNA60051FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Macrostomum lignanoPRJNA284736FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Meloidogyne floridensisPRJEB6016FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Meloidogyne haplaPRJNA29083FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Meloidogyne incognitaPRJEA28837FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Mesocestoides cortiPRJEB510FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Necator americanusPRJNA72135FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Nippostrongylus brasiliensisPRJEB511FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Oesophagostomum dentatumPRJNA72579FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Onchocerca flexuosaPRJEB512FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Onchocerca ochengiPRJEB1204FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Onchocerca ochengiPRJEB1809FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Onchocerca volvulusPRJEB513FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Opisthorchis viverriniPRJNA222628FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Panagrellus redivivusPRJNA186477FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Parascaris equorumPRJEB514FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Parastrongyloides trichosuriPRJEB515FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Pristionchus exspectatusPRJEB6009FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Pristionchus pacificusPRJNA12644FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Protopolystoma xenopodisPRJEB1201FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Rhabditophanes sp. KR3021PRJEB1297FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Romanomermis culicivoraxPRJEB1358FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistocephalus solidusPRJEB527FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma curassoniPRJEB519FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma haematobiumPRJNA78265FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma japonicumPRJEA34885FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma mansoniPRJEA36577FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma margrebowieiPRJEB522FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma mattheeiPRJEB523FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schistosoma rodhainiPRJEB526FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Schmidtea mediterraneaPRJNA12585FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Soboliphyme baturiniPRJEB516FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Spirometra erinaceieuropaeiPRJEB1202FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Steinernema carpocapsaePRJNA202318FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Steinernema feltiaePRJNA204661FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Steinernema glaseriPRJNA204943FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Steinernema monticolumPRJNA205067FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Steinernema scapterisciPRJNA204942FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Strongyloides papillosusPRJEB525FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Strongyloides rattiPRJEB125FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Strongyloides stercoralisPRJEB528FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Strongyloides venezuelensisPRJEB530FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Strongylus vulgarisPRJEB531FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Syphacia murisPRJEB524FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Taenia asiaticaPRJEB532FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Taenia soliumPRJNA170813FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Teladorsagia circumcinctaPRJNA72569FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Thelazia callipaedaPRJEB1205FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Toxocara canisPRJEB533FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Toxocara canisPRJNA248777FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella britoviPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella murrelliPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella nativaPRJNA179527FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella nativaPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella nelsoniPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella papuaePRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella patagoniensisPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella pseudospiralisISS13_PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella pseudospiralisISS141_PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella pseudospiralisISS176_PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella pseudospiralisISS470_PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella pseudospiralisISS588_PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella spiralisPRJNA12603FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella spiralisPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella sp. T6PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella sp. T8PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella sp. T9PRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichinella zimbabwensisPRJNA257433FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichobilharzia regentiPRJEB4662FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichuris murisPRJEB126FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichuris suisPRJNA179528FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichuris suisPRJNA208415FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichuris suisPRJNA208416FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Trichuris trichiuraPRJEB535FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Wuchereria bancroftiPRJEB536FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA
Wuchereria bancroftiPRJNA275548FASTAFASTAFASTAGFF3 / GTFFASTAFASTAFASTA