Globodera pallida - public RNASeq studies
Table of Contents
Analysed
ERP001236: Globodera pallida transcriptomics
Wellcome Sanger Institute
As part of the Globodera pallida (potato cyst nematode) genome project we are profiling the transcriptome of the parasite across its life cycle using RNA-Seq. .
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Differential expression
Design: 8 conditions
| Condition | num. replicates | Developmental stage |
|---|---|---|
| 14 dpi | 2 | 14 dpi |
| 21 dpi | 2 | 21 dpi |
| 28 dpi | 2 | 28 dpi |
| 35 dpi | 2 | 35 dpi |
| 7 dpi | 1 | 7 dpi |
| Adult male | 2 | Adult male |
| J2 | 3 | J2 |
| egg | 2 | egg |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!
SRP146253: Globodera spp. host specificity
Agriculture and Agri-Food Canada
Release 19 - March 2024
.
