WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase
RNASeq Strongyloides stercoralis

Strongyloides stercoralis - public RNASeq studies

Analysed

ERP001556: RNAseq of S. stercoralis PV001 strain developmental stages

Penn Genome Frontiers Institute

RNAseq study to examine developmental regulation of S. stercoralis transcripts with a focus on infectious third-stage larvae
E-MTAB-1164 in ArrayExpress

Downloads

  • Characteristics and conditions per run

  • Counts of aligned reads per run (HTSeq2)

  • Gene expression (TPM) per run

  • Gene expression (TPM) per condition as median across runs

  • Differential expression

Design: 7 conditions

Condition num. replicates Developmental stage Strain
Free-living females 3 Young gravid females PV001
L3+ 3 Tissue migrating third stage larvae PV001
L3i 3 Infectious third stage larvae PV001
Parasitic females 3 Gravid parasitic females PV001
Post free-living L1 3 Post free living first stage larvae PV001
Post parasitic L1 3 Post parasitic first stage larvae PV001
Post parasitic L3 3 Post parasitic heterogonically developing ~third stage larvae PV001

ERP004559: RNAseq of S. stercoralis PV001 strain L3i activation

Department of Biology, Hollins University

RNAseq study to examine regulation of S. stercoralis transcripts during L3i activation
E-MTAB-2192 in ArrayExpress

Downloads

  • Characteristics and conditions per run

  • Counts of aligned reads per run (HTSeq2)

  • Gene expression (TPM) per run

  • Gene expression (TPM) per condition as median across runs

  • Differential expression

Design: 5 conditions

Condition num. replicates Developmental stage Strain Treatment
8-bromo-3',5'-cyclic GMP 4 L3i PV001 8-bromo-3',5'-cyclic GMP
DMEM 4 L3i PV001 DMEM
M9 buffer 4 L3i PV001 M9 buffer
No treatment 4 L3i PV001 No treatment
delta(7)-DA 4 L3i PV001 delta(7)-DA