WormBase ParaSite HomeVersion: WBPS8 (WS256)

Globodera pallida

BioProject PRJEB123 | Data Source Wellcome Trust Sanger Institute | Taxonomy ID 36090

About Globodera pallida

The nematode Globodera pallida, or golden nematode or potato cyst nematode (PCN), is one of the most economically important nematode problems of the U.K. potato industry. PCN imposes an annual cost in excess of 50 million on U.K. potato growers and threaten the future of the crop for many growers. Effective control of G. pallida is an essential requirement to maintain the competitiveness of U.K. potato production.

Genome assembly: GPAL001

The G. pallida genome was sequenced by the Parasite Genomics group at the Wellcome Trust Sanger Institute, as described in Cotton et al (2014). The assembly version represented here is that used in the analysis for publication, and corresponds to INSDC assembly GPAL001.

Gene annotation

The gene predictions were made by the Parasite Genomics group at the Wellcome Trust Sanger Institute, as described in Cotton et al (2014).

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Comparative genomics

What can I find? Orthologues, paralogues, and gene trees across multiple species.

More information and statistics

Key Publications

Statistics

AssemblyGPAL001, GCA_000724045.1
StrainLindley
Database VersionWBPS8
Genome Size123,625,196
Data SourceWellcome Trust Sanger Institute
Annotation Version2014-05-WormBase

Gene counts

Coding genes16,403
Gene transcripts16,403

Assembly Statistics

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh

About this species