WormBase ParaSite HomeVersion: WBPS8 (WS256)

Trichuris suis

BioProject PRJNA208416 | Data Source University of Melbourne | Taxonomy ID 68888

About Trichuris suis

The nematode Trichuris suis, or whipworm, is a parasite of pigs that is found worldwide, but is most prevalent in warm, humid climates. Critical infestations of T. suis may cause acute morbidity and mortality in young female pigs. T. suis has been shown in trials to colonize humans briefly without triggering infections.

There are 2 alternative genome projects for Trichuris suis available in WormBase ParaSite: PRJNA179528 PRJNA208415

Genome assembly: Tsuis_adult_female_1.0

The genome of a female T. suis isolate (strain DCEP-RM93F) was sequenced by Gasser laboratory at the University of Melbourne, as described by Jex et al (2014). The assembly version represented here was submitted directly to WormBase in early 2014.

Gene annotation

The gene predictions were made by the Gasser laboratory at the University of Melbourne, as described by Jex et al (2014). The gene set represented here is that submitted directly to WormBase in early 2014.

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Comparative genomics

What can I find? Orthologues, paralogues, and gene trees across multiple species.

More information and statistics

Key Publications

Statistics

AssemblyTsuis_adult_female_1.0, GCA_000701025.1
StrainDCEP-RM93F
Database VersionWBPS8
Genome Size71,056,402
Data SourceUniversity of Melbourne
Annotation Version2014-05-WormBase

Gene counts

Coding genes14,261
Gene transcripts14,261

Assembly Statistics

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh

About this species