Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Crassostrea gigas

Capitella teleta

Schmidtea mediterranea strain S2F19 (PRJNA885486) (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498) (PRJNA371498)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341) (PRJNA532341)

Gyrodactylus salaris strain Lier (PRJNA244375) (PRJNA244375)

Protopolystoma xenopodis (PRJEB1201) (PRJEB1201)

Paragonimus heterotremus strain HASH(0x251c900) (PRJNA284523) (PRJNA284523)

Paragonimus skrjabini miyazakii strain HASH(0x3fae100) (PRJNA245325) (PRJNA245325)

Paragonimus kellicotti strain Missouri (PRJNA179523) (PRJNA179523)

Paragonimus westermani (PRJNA454344) (PRJNA454344)

Opisthorchis felineus strain AK-0245 (PRJNA413383) (PRJNA413383)

Opisthorchis viverrini (PRJNA222628) (PRJNA222628)

Clonorchis sinensis strain Cs-k2 (PRJNA386618) (PRJNA386618)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673) (PRJNA636673)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522) (PRJNA179522)

Fasciola hepatica strain S (PRJEB58756) (PRJEB58756)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515) (PRJNA230515)

Fasciolopsis buski strain HT (PRJNA284521) (PRJNA284521)

Echinostoma caproni strain Egypt (PRJEB1207) (PRJEB1207)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434) (PRJEB44434)

Schistosoma mansoni (PRJEA36577) (PRJEA36577)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434) (PRJEB44434)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434) (PRJEB44434)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434) (PRJEB44434)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434) (PRJEB44434)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434) (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434) (PRJEB44434)

Schistosoma haematobium (PRJNA78265) (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434) (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434) (PRJEB44434)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434) (PRJEB44434)

Schistosoma japonicum strain F4M4 (PRJNA724792) (PRJNA724792)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434) (PRJEB44434)

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434) (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434) (PRJEB44434)

Rodentolepis nana strain Japan (PRJEB508) (PRJEB508)

Hymenolepis microstoma (PRJEB124) (PRJEB124)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942) (PRJEB30942)

Echinococcus granulosus strain G1 (PRJEB121) (PRJEB121)

Echinococcus granulosus strain EgG1s_protoscolex (PRJNA754835) (PRJNA754835)

Echinococcus multilocularis strain Java (PRJEB122) (PRJEB122)

Echinococcus canadensis (PRJEB8992) (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222) (PRJEB31222)

Taenia saginata strain TSAYD01 (PRJNA71493) (PRJNA71493)

Taenia asiatica strain TASYD01 (PRJNA299871) (PRJNA299871)

Taenia multiceps strain Gns01 (PRJNA307624) (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813) (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534) (PRJEB534)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510) (PRJEB510)

Spirometra erinaceieuropaei (PRJEB1202) (PRJEB1202)

Schistocephalus solidus strain NST_G2 (PRJEB527) (PRJEB527)

Dibothriocephalus latus (PRJEB1206) (PRJEB1206)

Trichinella zimbabwensis strain ISS1029 (PRJNA257433) (PRJNA257433)

Trichinella papuae strain ISS1980 (PRJNA257433) (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433) (PRJNA257433)

Trichinella spiralis strain ISS 195 (PRJNA12603) (PRJNA12603)

Trichinella nelsoni strain ISS37 (PRJNA257433) (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433) (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433) (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433) (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433) (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433) (PRJNA257433)

Trichinella murrelli strain ISS417 (PRJNA257433) (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433) (PRJNA257433)

Trichuris trichiura strain Republic of Ecuador (PRJEB535) (PRJEB535)

Trichuris suis (PRJNA179528) (PRJNA179528)

Trichuris muris (PRJEB126) (PRJEB126)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516) (PRJEB516)

Mesodorylaimus sp. YZB2_4 strain HASH(0x248fae0) (PRJNA953805) (PRJNA953805)

Romanomermis culicivorax (PRJEB1358) (PRJEB1358)

Epsilonema sp. ZAB3_2 strain HASH(0x3d292b8) (PRJNA953805) (PRJNA953805)

Microlaimidae sp. YZB2_3 strain HASH(0x2417920) (PRJNA953805) (PRJNA953805)

Ptycholaimellus sp. GST1_10 strain HASH(0x3758970) (PRJNA953805) (PRJNA953805)

Rhynchonema sp. JSB1_4 strain HASH(0x2bf7b90) (PRJNA953805) (PRJNA953805)

Theristus sp. LFF4_11 strain HASH(0x3bf0af0) (PRJNA953805) (PRJNA953805)

Sabatieria punctata strain HASH(0x2d80ae0) (PRJNA953805) (PRJNA953805)

Linhomoeus sp. GSCO2_2 strain HASH(0x3fdfb90) (PRJNA953805) (PRJNA953805)

Paralinhomoeus sp. GSCO2_6 strain HASH(0x27cc970) (PRJNA953805) (PRJNA953805)

Plectus sambesii strain ES601 (PRJNA390260) (PRJNA390260)

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503) (PRJEB503)

Syphacia muris strain Spain/Valencia (PRJEB524) (PRJEB524)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513) (PRJEB513)

Onchocerca ochengi strain Ngaoundere (PRJEB1204) (PRJEB1204)

Onchocerca flexuosa strain Red Deer (PRJNA230512) (PRJNA230512)

Dirofilaria immitis (PRJEB1797) (PRJEB1797)

Brugia malayi strain FR3 (PRJNA10729) (PRJNA10729)

Brugia timori strain Flores island/ Indonesia (PRJEB4663) (PRJEB4663)

Brugia pahangi strain Scotland/Glasgow (PRJEB497) (PRJEB497)

Wuchereria bancrofti strain 17-3 (PRJNA275548) (PRJNA275548)

Loa loa strain CAT (PRJNA246086) (PRJNA246086)

Acanthocheilonema viteae (PRJEB1697) (PRJEB1697)

Cercopithifilaria johnstoni (PRJEB47283) (PRJEB47283)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075) (PRJEB3075)

Elaeophora elaphi (PRJEB502) (PRJEB502)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205) (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505) (PRJEB505)

Dracunculus medinensis (PRJEB500) (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729) (PRJNA479729)

Ascaris suum strain AG01 (PRJNA62057) (PRJNA62057)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950) (PRJEB4950)

Parascaris equorum (PRJEB514) (PRJEB514)

Parascaris univalens strain PG01 (PRJNA386823) (PRJNA386823)

Toxocara canis strain PN_DK_2014 (PRJNA248777) (PRJNA248777)

Anisakis simplex (PRJEB496) (PRJEB496)

Strongyloides stercoralis strain PV001 (PRJNA930454) (PRJNA930454)

Strongyloides ratti (PRJEB125) (PRJEB125)

Strongyloides papillosus strain LIN (PRJEB525) (PRJEB525)

Strongyloides venezuelensis (PRJEB530) (PRJEB530)

Parastrongyloides trichosuri strain KNP (PRJEB515) (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297) (PRJEB1297)

Panagrolaimus sp. ES5 (PRJEB32708) (PRJEB32708)

Panagrolaimus superbus (PRJEB32708) (PRJEB32708)

Panagrolaimus davidi (PRJEB32708) (PRJEB32708)

Panagrolaimus sp. PS1159 (PRJEB32708) (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708) (PRJEB32708)

Halicephalobus mephisto strain m2B (PRJNA528747) (PRJNA528747)

Halicephalobus sp. NKZ332 (PRJNA555616) (PRJNA555616)

Panagrellus redivivus (PRJNA186477) (PRJNA186477)

Acrobeloides nanus (PRJEB26554) (PRJEB26554)

Heterodera schachtii strain Bonn (PRJNA522950) (PRJNA522950)

Heterodera glycines strain TN10 (PRJNA381081) (PRJNA381081)

Globodera pallida strain D383 (PRJNA764088) (PRJNA764088)

Globodera pallida strain Lindley (PRJEB123) (PRJEB123)

Globodera rostochiensis strain Ro1 (PRJEB13504) (PRJEB13504)

Meloidogyne incognita (PRJEB8714) (PRJEB8714)

Meloidogyne floridensis strain SJF1 (PRJNA340324) (PRJNA340324)

Meloidogyne javanica strain VW4 (PRJNA340324) (PRJNA340324)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575) (PRJNA438575)

Meloidogyne enterolobii strain Swiss (PRJEB36431) (PRJEB36431)

Meloidogyne hapla strain VW9 (PRJNA29083) (PRJNA29083)

Meloidogyne graminicola (PRJNA411966) (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745) (PRJNA666745)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219) (PRJNA498219)

Ditylenchus destructor strain Dd01 (PRJNA312427) (PRJNA312427)

Bradynema listronoti strain AAFC-BrLi-01_J3_LR_R9 (PRJNA842945) (PRJNA842945)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022) (PRJEB40022)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437) (PRJEA64437)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023) (PRJEB40023)

Aphelenchoides fujianensis strain Dali (PRJNA834627) (PRJNA834627)

Aphelenchoides besseyi strain APVT (PRJNA834627) (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627) (PRJNA834627)

Steinernema glaseri (PRJNA204943) (PRJNA204943)

Steinernema hermaphroditum strain PS9179 (PRJNA982879) (PRJNA982879)

Steinernema carpocapsae (PRJNA202318) (PRJNA202318)

Steinernema scapterisci (PRJNA204942) (PRJNA204942)

Steinernema feltiae strain NW (PRJNA353610) (PRJNA353610)

Steinernema monticolum (PRJNA205067) (PRJNA205067)

Enoplolaimus lenunculus strain HASH(0x26313f8) (PRJNA953805) (PRJNA953805)

Trileptium ribeirensis strain HASH(0x26e2a80) (PRJNA953805) (PRJNA953805)

Trissonchulus latispiculum strain HASH(0x3ac59f0) (PRJNA953805) (PRJNA953805)

Trissonchulus sp. WLG1_4 strain HASH(0x3ccc910) (PRJNA953805) (PRJNA953805)

Pristionchus pacificus strain PS312 (PRJNA12644) (PRJNA12644)

Pristionchus exspectatus (PRJEB46690) (PRJEB46690)

Pristionchus arcanus (PRJEB27334) (PRJEB27334)

Pristionchus maxplancki (PRJEB27334) (PRJEB27334)

Pristionchus japonicus (PRJEB27334) (PRJEB27334)

Pristionchus mayeri (PRJEB27334) (PRJEB27334)

Pristionchus entomophagus (PRJEB27334) (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334) (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331) (PRJEB53331)

Micoletzkya japonica (PRJEB27334) (PRJEB27334)

Allodiplogaster sudhausi strain HASH(0x2b14c20) (PRJEB48369) (PRJEB48369)

Diplogasteroides magnus strain TMG144 (PRJNA655932) (PRJNA655932)

Koerneria luziae strain NKZ323 (PRJNA655932) (PRJNA655932)

Levipalatum texanum strain TMG5 (PRJNA655932) (PRJNA655932)

Heligmosomoides polygyrus (PRJEB15396) (PRJEB15396)

Nippostrongylus brasiliensis strain HASH(0x26b8b58) (PRJNA994163) (PRJNA994163)

Haemonchus placei strain MHpl1 (PRJEB509) (PRJEB509)

Haemonchus contortus (PRJEB506) (PRJEB506)

Teladorsagia circumcincta (PRJNA72569) (PRJNA72569)

Cylicostephanus goldi strain England/Cheshire (PRJEB498) (PRJEB498)

Cylicocyclus nassatus strain Nouzilly (PRJEB63274) (PRJEB63274)

Strongylus vulgaris strain USA/Kentucky (PRJEB531) (PRJEB531)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579) (PRJNA72579)

Parelaphostrongylus tenuis strain MNPRO001-30 (PRJNA729714) (PRJNA729714)

Necator americanus strain HASH(0x2e55d98) (PRJNA1007425) (PRJNA1007425)

Ancylostoma duodenale strain Baltimore (PRJNA72581) (PRJNA72581)

Ancylostoma caninum strain Baltimore (PRJNA72585) (PRJNA72585)

Ancylostoma ceylanicum strain HASH(0x3172748) (PRJNA231479) (PRJNA231479)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494) (PRJEB494)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250) (PRJNA663250)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391) (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587) (PRJNA72587)

Heterorhabditis bacteriophora strain M31e (PRJNA13977) (PRJNA13977)

Oscheius tipulae strain CEW1 (PRJNA644888) (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512) (PRJEB15512)

Auanema sp. JU1783 strain HASH(0x208d358) (PRJEB51845) (PRJEB51845)

Diploscapter pachys strain PF1309 (PRJNA280107) (PRJNA280107)

Diploscapter coronatus strain PDL0010 (PRJDB3143) (PRJDB3143)

Caenorhabditis angaria (PRJNA51225) (PRJNA51225)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354) (PRJEB11354)

Caenorhabditis elegans strain N2 (PRJNA13758) (PRJNA13758)

Caenorhabditis inopinata (PRJDB5687) (PRJDB5687)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608) (PRJEB12608)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596) (PRJEB12596)

Caenorhabditis sinica (PRJNA194557) (PRJNA194557)

Caenorhabditis nigoni strain JU1422 (PRJNA384657) (PRJNA384657)

Caenorhabditis briggsae (PRJNA10731) (PRJNA10731)

Caenorhabditis remanei strain PX506 (PRJNA577507) (PRJNA577507)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967) (PRJNA53967)

Caenorhabditis latens (PRJNA248912) (PRJNA248912)

Caenorhabditis brenneri (PRJNA20035) (PRJNA20035)

Caenorhabditis tropicalis (PRJNA53597) (PRJNA53597)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602) (PRJEB12602)

Caenorhabditis panamensis (PRJEB28259) (PRJEB28259)

Caenorhabditis becei strain QG2083 (PRJEB28243) (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601) (PRJEB12601)

Caenorhabditis japonica (PRJNA12591) (PRJNA12591)

Caenorhabditis uteleia strain JU2585 (PRJEB12600) (PRJEB12600)

Caenorhabditis bovis (PRJEB34497) (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642) (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595) (PRJEB12595)

Mesorhabditis belari strain JU2817 (PRJEB61636) (PRJEB61636)

Mesorhabditis spiculigera strain AF72 (PRJEB59059) (PRJEB59059)

Bunonema sp. RGD898 (PRJNA655932) (PRJNA655932)

Drosophila melanogaster

Ixodes scapularis strain Wikel

Mus musculus reference (CL57BL6) strain

Rattus norvegicus strain BN/NHsdMcwi

Homo sapiens

Danio rerio

Ciona intestinalis

Nematostella vectensis strain CH2 x CH6

Trichoplax adhaerens strain Grell-BS-1999

Amphimedon queenslandica

Schizosaccharomyces pombe 972h-

Saccharomyces cerevisiae S288C