Onchocerca flexuosa

Genome Assembly & Annotation

Assembly

WormBase ParaSite obtained the assembly from the INSDC records. Genome assembly was conducted as decribed in McNulty SN, et al., 2012 and Abubucker S, el al., 2014.

Annotation

WormBase obtained the annotation from the INSDC records. Genome annotation was conducted as decribed in McNulty SN, et al., 2012 and Abubucker S, el al., 2014.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Abubucker S, McNulty SN, Rosa BA, Mitreva M. Identification and characterization of alternative splicing in parasitic nematode transcriptomes. Parasit Vectors, 2014;7():151

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree