Acrobeloides nanus

Genome Assembly & Annotation

Assembly

The genome was sequenced on the Illumina GaIIx and HiSeq platforms at the University College London, as described by Schiffer et al. (2018).

Annotation

The annotation was produced using AUGUSTUS incorporating de novo predictions with C. elegans as species profile and RNASeq data, as described by Schiffer et al. (2018). It was submitted to WormBase by Philipp Schiffer in August 2018.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Schiffer PH, Polsky AL, Cole AG, Camps JIR, Kroiher M, Silver DH, Grishkevich V, Anavy L, Koutsovoulos G, Hashimshony T, Yanai I. The gene regulatory program of <i>Acrobeloides nanus</i> reveals conservation of phylum-specific expression. Proc Natl Acad Sci U S A, 2018;115(17):4459-4464

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression