Ancylostoma ceylanicum

Genome Assembly & Annotation

Assembly

The genome was sequenced by collaborating groups at the California Institute of Technology, Cornell University and the University of Massachusetts Medical School, as described by Schwarz et al (2015).

Annotation

This set of gene annotations has been generated as part of a combined RNA-seq and excreted/secreted (ES) protein analysis carried out by Prof. Erich Schwarz at Cornell University in collaboration with Prof. Raffi Aroian at UMass Chan Medical School. This is a direct replacement of older gene predictions generated by Cornell University, described by Schwarz et al (2015).

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV. The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. Nat Genet, 2015;47(4):416-422

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression