Auanema sp. JU1783

Genome Assembly & Annotation

Assembly

The full assembly process is outlined in Tandonnet et al., (2022). final de novo genome assembly was performed with MEGAHIT, version 1.2.6, followed by SOAPdenovo, version 2.04-r241.

Annotation

The full annoataion process is outlined in Tandonnet et al., (2022). The genome was annotated using BRAKER2 version 2.1.6, and Augustus version 3.4.0.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Tandonnet S, Haq M, Turner A, Grana T, Paganopoulou P, Adams S, Dhawan S, Kanzaki N, Nuez I, Félix MA, Pires-daSilva A. <i>De Novo</i> Genome Assembly of <i>Auanema Melissensis</i>, a Trioecious Free-Living Nematode. J Nematol, 2022;54(1):20220059

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree