Bradynema listronoti
BioProject PRJNA842945 | Data Source Agriculture and Agri-Food Canada (APMS, J-002846) | Taxonomy ID 413010
Genome Assembly & Annotation
Assembly
Long and short-read sequencing data was trimmed and filtered based on quality using Guppy (v 6.0.6) and Fastp (v 0.20.1). Long-read sequences were assembled using Flye (2.9-b1768). short-reads were assembled using HASLR (v 0.8a1) assisted by long-reads. These assemblies were merged using Quickmerge (v 0.3), and scaffolded with LINKS (v 1.8.7) The final scaffolded assembly was polished and corrected with Pilon (v 1.23).
Annotation
The full annotation process is outlined in Ste-Croix et al., (2022). The genome was annotated using BRAKER.
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Key Publications
- Ste-Croix DT, Gagnon AÈ, Mimee B. Draft Genome of the Insect-Parasitic Nematode <i>Bradynema Listronoti</i>. J Nematol, 2022;54(1):20220047
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Assembly Statistics
Assembly | AAFC-BrLi-01_v2, GCA_024678965.1 |
Strain | AAFC-BrLi-01_J3_LR_R9 |
Database Version | WBPS19 |
Genome Size | 80,637,718 |
Data Source | Agriculture and Agri-Food Canada (APMS, J-002846) |
Annotation Version | 2023-10-WormBase |
Gene counts
Coding genes | 17,886 |
Gene transcripts | 18,281 |
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