Bursaphelenchus xylophilus
BioProject PRJEB40022 | Data Source University of Miyazaki | Taxonomy ID 6326
About Bursaphelenchus xylophilus
Bursaphelenchus xylophilus is a gonochoristic species of the Clade IV nematodes. It is a parasite of Pine trees thought to originate from North America, but has spread through East Asia and Portugal. It is also known as Pine Wilt Nematode (PWN).
There is 1 alternative genome project for Bursaphelenchus xylophilus available in WormBase ParaSite: PRJEA64437
Genome Assembly & Annotation
Assembly
Nanopore long reads were assembled using Flye v2.7.1. After base correction by two rounds of Pilon v1.23 with the Illumina paired-end reads, the assembly was further scaffolded using the 3D-DNA pipeline, as described by Dayi et al., 2020.
Annotation
The gene set presented here was submitted to WormBase ParaSite by the authors (see Dayi et al., 2020).
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Key Publications
- Dayi M, Sun S, Maeda Y, Tanaka R, Yoshida A, Tsai IJ, Kikuchi T. Nearly Complete Genome Assembly of the Pinewood Nematode Bursaphelenchus xylophilus Strain Ka4C1. Microbiol Resour Announc, 2020;9(42):e01002-20
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Assembly Statistics
| Assembly | BXYJ5, GCA_904067135.1 |
| Strain | Ka4C1 |
| Database Version | WBPS19 |
| Genome Size | 78,274,012 |
| Data Source | University of Miyazaki |
| Annotation Version | 2021-03-WormBase |
Gene counts
| Coding genes | 15,884 |
| Gene transcripts | 15,884 |
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