EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Caenorhabditis panamensis

BioProject PRJEB28259 | Data Source BANG | Taxonomy ID 2301259

About Caenorhabditis panamensis

Caenorhabditis panamensis (formerly Caenorhabditis sp. 28) was formally described by Stevens et al in 2019. It is a member of the Japonica group in the Caenorhabditis genus; molecular data suggest its closest known relatives to be C. nouraguensis, C. yunquensis, C. macrosperma, C. waitukubuli, and C. becei. It reproduces through males and females. The species type isolate was collected from a rotting palm fruit on Barro Colorado Island, Panama in 2012.

Genome Assembly & Annotation

Assembly

Short and long insert Illumina libraries were sequenced at the NYU Center for Genomics and Systems Biology GenCore and assembled using Platanus, as described in Stevens et al., 2019.

Annotation

The gene set presented here was provided by Lewis Stevens, and predicted using BRAKER.

Key Publications

Assembly Statistics

AssemblyCPANA_v1, GCA_900883565.2
Database VersionWBPS19
Genome Size79,045,575
Data SourceBANG
Annotation Version2020-05-WormBase

Gene counts

Coding genes22,310
Gene transcripts23,814

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh