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WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Caenorhabditis quiockensis

BioProject PRJEB11354 | Data Source BANG | Taxonomy ID 2305861

About Caenorhabditis quiockensis

Caenorhabditis quiockensis (formerly Caenorhabditis sp. 38) was formally described by Stevens et al. in 2019. Molecular data suggest its closest known relatives to be C. dolens, C. castelli and C. angaria. It reproduces through males and females. The species type isolate was collected from a rotting fruit in Guadeloupe in 2014.

Genome Assembly & Annotation

Assembly

Short-insert Illumina reads were assembled using Velvet. The resulting contigs were scaffolded with Trinity-assembled transcripts using SCUBAT2. The assembly is described in full in Stevens et al., 2019.

Annotation

The annotation presented here corresponds to the v1 annotation retrieved from caenorhabditis.org in March 2020. Gene models were predicted using BRAKER, guided by RNAseq, as described in Stevens et al., 2019.

Key Publications

Assembly Statistics

AssemblyCQUIO_v1, GCA_900536415.3
StrainJU2809
Database VersionWBPS19
Genome Size100,371,645
Data SourceBANG
Annotation Version2020-05-WormBase

Gene counts

Coding genes22,238
Gene transcripts23,456

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh