About Caenorhabditis remanei
Caenorhabditis remanei is a small, free-living roundworm found in decaying plant material especially compost, mushroom beds in Northern temperate regions. The worms feed on the bacteria and other micro-organisms associated with plant decay. The biology of C. remanei is similar to that of C. elegans, with a short generation time through four larval stages into an adult. C.remanei has both male and female adults unlike the hermaphroditic species such as C. elegans and C. briggsae. All three species are often found at the same site. C. remanei is frequently found associated with snails, slugs, millipedes, mites and pill bugs, which are presumed to transport worms, especially the dormant dauer stage, from one location to another, as with other Caenorhabditids.
Genome Assembly & Annotation
This is a chromosome-level genome assembly of the C. remanei PX506 inbred strain created from a wild isolate from an isopod collected in a forest near Toronto (Canada). The primary contigs were generated from two PacBio single-molecule real-time (SMRT) Cells using the FALCON assembler and the final scaffolds were constructed with Dovetail Genomics Hi-C library sequences and the HiRise software pipeline, as described by Teterina et al., 2020.
The gene set presented here was generated with a custom pipeline described in Teterina et al., 2020.
- Teterina AA, Willis JH, Phillips PC. Chromosome-Level Assembly of the <i>Caenorhabditis remanei</i> Genome Reveals Conserved Patterns of Nematode Genome Organization. Genetics, 2020;214(4):769-780
|Data Source||University of Oregon|
|Non coding genes||24|
|Small non coding genes||24|
This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh