Echinococcus canadensis

Genome Assembly & Annotation

Assembly

The G7 genotype has been sequenced and assembled by the BMHID group at Instituto de Microbiología y Parasitología Médica, University of Buenos Aires, Argentina; and the Genomics and Computational Biology Group of the CPqRR at Oswaldo Cruz Foundation, Belo Horizonte, Brazil. This work is described by Maldonado LL et al (2017). The assembly version represented here is ECANG7_assembly_v2. contact: Laura Kamenetzky, lkamenetzky@fmed.uba.ar

Annotation

The G7 genotype has been sequenced and assembled by the BMHID group at Instituto de Microbiología y Parasitología Médica, University of Buenos Aires, Argentina; and the Genomics and Computational Biology Group of the CPqRR at Oswaldo Cruz Foundation, Belo Horizonte, Brazil. This work is described by Maldonado LL et al (2017). The assembly version represented here is ECANG7_assembly_v2. contact: Laura Kamenetzky, lkamenetzky@fmed.uba.ar

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Maldonado LL, Assis J, Araújo FM, Salim AC, Macchiaroli N, Cucher M, Camicia F, Fox A, Rosenzvit M, Oliveira G, Kamenetzky L. The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases. BMC Genomics, 2017;18(1):204

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree