EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Globodera pallida

BioProject PRJEB123 | Data Source Wellcome Sanger Institute | Taxonomy ID 36090

About Globodera pallida

The nematode Globodera pallida, or golden nematode or potato cyst nematode (PCN), is one of the most economically important nematode problems of the U.K. potato industry. PCN imposes an annual cost in excess of 50 million on U.K. potato growers and threaten the future of the crop for many growers. Effective control of G. pallida is an essential requirement to maintain the competitiveness of U.K. potato production.

There are 2 alternative genome projects for Globodera pallida available in WormBase ParaSite: PRJNA702104 PRJNA764088

Genome Assembly & Annotation

Assembly

The G. pallida genome was sequenced by the Parasite Genomics group at the Wellcome Trust Sanger Institute, as described in Cotton et al (2014). The assembly version represented here is that used in the analysis for publication, and corresponds to INSDC assembly GPAL001.

Annotation

The gene predictions were made by the Parasite Genomics group at the Wellcome Trust Sanger Institute, as described in Cotton et al (2014).

Key Publications

Assembly Statistics

AssemblyGPAL001, GCA_000724045.1
StrainLindley
Database VersionWBPS19
Genome Size123,625,196
Data SourceWellcome Sanger Institute
Annotation Version2014-05-WormBase

Gene counts

Coding genes16,403
Gene transcripts16,403

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh