Gyrodactylus salaris

Genome Assembly & Annotation

Assembly

The G. salaris genome was sequenced by the National University Museum (University of Oslo), as described in Hahn et al (2014).

Annotation

The gene predictions were made by the National University Museum (University of Oslo) using the automated annotation pipeline MAKER 2.26, as described in Hahn et al (2014).

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Hahn C, Fromm B, Bachmann L. Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata. Genome Biol Evol, 2014;6(5):1105-1117

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree