Meloidogyne enterolobii
BioProject PRJEB36431 | Data Source Université Côte d’Azur, INRAE | Taxonomy ID 390850
About Meloidogyne enterolobii
The nematode _ Meloidogyne enterolobii_, a root-knot nematode, infects a variety of crops such as eggplant, bell pepper, soybean, sweet potato, tobacco, tomato, or watermelon. It is able to reproduce on Mi-1 gene carrying crops that are resistant to other root-knot nematodes, making the species a growing economic threat.
There is 1 alternative genome project for Meloidogyne enterolobii available in WormBase ParaSite: PRJNA340324
Genome Assembly & Annotation
Assembly
The entire assembly process is outlined in Koutsovoulos et al., (2020). A preliminary assembly was created from trimmed Pacbio reads using Canu. The preliminary assembly was checked for contamination. clean contigs were retained, and a new assembly was created with Canu. The clean assembly was then corrected with pilon.
Annotation
The entire annotation process is outlined in Koutsovoulos et al., (2020).
Downloads
Tools
Key Publications
- Koutsovoulos GD, Poullet M, Elashry A, Kozlowski DKL, Sallet E, Da Rocha M, Perfus-Barbeoch L, Martin-Jimenez C, Frey JE, Ahrens CH, Kiewnick S, Danchin EGJ. Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode. Sci Data, 2020;7(1):324
Navigation
Assembly Statistics
Assembly | Meloidogyne_enterolobii_genome_assembly, GCA_903994135.1 |
Strain | Swiss |
Database Version | WBPS19 |
Genome Size | 240,054,310 |
Data Source | Université Côte d’Azur, INRAE |
Annotation Version | 2023-09-WormBase |
Gene counts
Coding genes | 62,588 |
Non coding genes | 1,253 |
Small non coding genes | 1,253 |
Gene transcripts | 63,841 |
Learn more about this widget in our help section
This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh