WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

Mesorhabditis spiculigera

BioProject PRJEB59059 | Data Source LBMC UMR5239 | Taxonomy ID 96644

About Mesorhabditis spiculigera

Mesorhabditis spiculigera is a free-living nematode that is widely distributed throughout the world and exhibits great potential for recycling of organic matter.

Genome Assembly & Annotation

Assembly

This genome was submitted to ENA on July 6, 2023 by LBMC UMR5239 and has been imported from there. Mixed M. spiculigera developmental stages have been pooled and sequenced using both short- (Illumina HiSeq 4000) and long-read sequencing technology. The reads were polished and assembled using Canu, Flye, Quickmerge, Pilon and Medaka.

Annotation

The annotation was submitted to GenBank on July 6, 2023 by LBMC UMR5239 and has been imported from there.

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Tools

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Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page
Example gene tree

Assembly Statistics

AssemblyM.spiculigera_Hybrid_genome, GCA_958295435.1
StrainAF72
Database VersionWBPS19
Genome Size197,809,214
Data SourceLBMC UMR5239
Annotation Version2023-09-WormBase

Gene counts

Coding genes25,954
Pseudogenes15
Gene transcripts26,802

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This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh