Oscheius tipulae

BioProject PRJNA644888 | Data Source Wellcome Sanger Institute | Taxonomy ID 141969

About Oscheius tipulae

Oscheius tipulae is a free-living androdioecious species of nematode, characterized by the coexistence of males and hermaphrodites. It is used as a satellite developmental genetic model organism to study vulva formation.

There is 1 alternative genome project for Oscheius tipulae available in WormBase ParaSite: PRJEB15512

Genome Assembly & Annotation

Assembly

The chromosome-scale assembly presented here was generated from Oxford Nanopore and Illumina reads, as described in full by Gonzalez de la Rosa et al., 2021.

Annotation

The gene set was generated with GeneMark-ES, as described by Gonzalez de la Rosa et al., 2021.

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Key Publications

Gonzalez de la Rosa PM, Thomson M, Trivedi U, Tracey A, Tandonnet S, Blaxter M. A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes. G3 (Bethesda), 2021;11(1):jkaa020

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Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression

Assembly Statistics

Assembly	ASM1342590v1, GCA_013425905.1
Strain	CEW1
Database Version	WBPS19
Genome Size	60,923,166
Data Source	Wellcome Sanger Institute
Annotation Version	2021-03-WormBase

Gene counts

Coding genes	16,356
Non coding genes	568
Small non coding genes	568
Gene transcripts	16,924

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