EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Panagrolaimus sp. ES5

BioProject PRJEB32708 | Data Source University College London | Taxonomy ID 591445

About Panagrolaimus sp. ES5

Panagrolaimus sp. ES5 is an obligately outcrossing Panagrolaimid nematode. It was originally isolated from dried blackberry twigs by E. Schierenberg in Bornheim, Germany.

Genome Assembly & Annotation

Assembly

Short-insert Illumina reads were assembled with Velvet. Contigs were scaffolded with RNAseq-derived mRNA predictions using the SCUBAT pipeline, as described by Schiffer et al., 2019.

Annotation

Gene models were predicted with Augustus, as described by Schiffer et al., 2019.

Key Publications

Assembly Statistics

AssemblyES5_v2, GCA_901766855.1
Database VersionWBPS19
Genome Size90,240,976
Data SourceUniversity College London
Annotation Version2020-03-WormBase

Gene counts

Coding genes24,678
Gene transcripts24,756

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh