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WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Panagrolaimus sp. JU765

BioProject PRJEB32708 | Data Source University College London | Taxonomy ID 591449

About Panagrolaimus sp. JU765

Panagrolaimus sp. JU765 (formerly Proanagrolaimus sp. JU765) is a free-living, hermaphroditic nematode. It has been used as an outgroup in the study of cryptobiosis and anhydrobiosis, both common in members of the closely related Panagrolaimus genus.

Genome Assembly & Annotation

Assembly

Short-insert Illumina reads were assembled with Velvet. Contigs were scaffolded with RNAseq-derived mRNA predictions using the SCUBAT pipeline, as described by Schiffer et al., 2019.

Annotation

Gene models were predicted with Augustus, as described by Schiffer et al., 2019.

Key Publications

Assembly Statistics

AssemblyJU765_v2, GCA_901765185.1
Database VersionWBPS19
Genome Size64,262,255
Data SourceUniversity College London
Annotation Version2020-03-WormBase

Gene counts

Coding genes20,756
Gene transcripts24,878

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh