Parascaris univalens

Genome Assembly & Annotation

Assembly

The assembly was produced by the Davis laboratory at the University of Colorado , as described by Wang et al. (2017)

Annotation

The gene predictions were made by the Davis laboratory at the University of Colorado based on the output of TransDecoder . A correction was submitted by the authors in 2018 for release 11 of WormBase ParaSite. Release 15 saw the addition of 10 gene models curated as part of the study of the P. univalens P-glycoprotein repertoire at The Free University of Berlin.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Wang J, Gao S, Mostovoy Y, Kang Y, Zagoskin M, Sun Y, Zhang B, White LK, Easton A, Nutman TB, Kwok PY, Hu S, Nielsen MK, Davis RE. Comparative genome analysis of programmed DNA elimination in nematodes. Genome Res, 2017;27(12):2001-2014
• Gerhard AP, Krücken J, Heitlinger E, Janssen IJI, Basiaga M, Kornaś S, Beier C, Nielsen MK, Davis RE, Wang J, von Samson-Himmelstjerna G. The P-glycoprotein repertoire of the equine parasitic nematode Parascaris univalens. Sci Rep, 2020;10(1):13586

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression