Pristionchus japonicus

Genome Assembly & Annotation

Assembly

The assembly was created using Illumina reads, as described by Prabh et al. (2018)

Annotation

The community-based annotation presented here (live since release 16) represents an update to that described in Prabh et al., 2018, and was submitted directly to WormBase ParaSite by the authors. More information can be found in Rödelsperger et al., 2021.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Prabh N, Roeseler W, Witte H, Eberhardt G, Sommer RJ, Rödelsperger C. Deep taxon sampling reveals the evolutionary dynamics of novel gene families in <i>Pristionchus</i> nematodes. Genome Res, 2018;28(11):1664-1674

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression