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WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Trichobilharzia regenti

BioProject PRJEB44434 | Data Source Wellcome Sanger Institute | Taxonomy ID 157069

About Trichobilharzia regenti

The trematode Trichobilharzia regenti is a nasal parasite of European birds with freshwater snails of the family Lymnaeidae, Physidae, Planorbidae and Pleuroceridae as intermediate hosts. Infection causes cercarial dermatitis in humans.

Genome Assembly & Annotation

Assembly

This annotated genome assembly was produced as part of the doctoral thesis of Duncan Berger: [Berger, D. (2021). Comparative and population genomic analyses of the parasitic blood flukes (Doctoral thesis)](https://doi.org/10.17863/CAM.86667).

The assembly was generated from PacBio long-read sequencing data and scaffolded using Hi-C.

The source material for genome sequencing was a pool of single-miracidium derived cercariae, from the Czech Republic in 2014, provided by Roman Leontovyč and Petr Horák from Charles University, Prague.

Annotation

Gene finding employed a customized pipeline that integrated RNA-Seq, Iso-Seq and homology data. Berger, D. (2021). Comparative and population genomic analyses of the parasitic blood flukes (Doctoral thesis).

Key Publications

Assembly Statistics

AssemblytdTriRege1.1, GCA_944472135.2
StraintdTriRege1.1
Database VersionWBPS19
Genome Size954,258,533
Data SourceWellcome Sanger Institute
Annotation Version2022-10-WormBase

Gene counts

Coding genes14,478
Gene transcripts24,642

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh