Ancylostoma ceylanicum - public RNASeq studies
Table of Contents
Analysed
SRP035476: Ancylostoma ceylanicum transcriptome
Cornell University
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Design: 13 conditions
| Condition | num. replicates | Developmental stage | Incubation | Treatment |
|---|---|---|---|---|
| 12 days post infection | 1 | 12 days post infection | ||
| 18 d.p.i + incubate, Cry5B treatment | 1 | 18 days post infection | culture media | 100ug/mL Cry5B |
| 18 d.p.i + incubate, control treatment | 1 | 18 days post infection | culture media | HEPES buffer (control) |
| 18 d.p.i. + incubate with SB203580, Cry5B treatment | 1 | 18 days post infection | 50uM SB203580 (p38 MAPK inhibitor) | 100ug/mL Cry5B |
| 18 d.p.i. + incubate with SB203580, control treatment | 1 | 18 days post infection | 50uM SB203580 (p38 MAPK inhibitor) | HEPES buffer (control) |
| 18 d.p.i. 100ug/mL Cry5B treatment | 1 | 18 days post infection | 100ug/mL Cry5B | |
| 18 d.p.i. albendazole treatment | 1 | 18 days post infection | albendazole | |
| 18 d.p.i. control treatment | 1 | 18 days post infection | HEPES buffer (control) | |
| 19 days post infection | 1 | 19 days post infection | ||
| 24 hours post infection | 1 | 24 hours post infection | ||
| 5 days post infection | 1 | 5 days post infection | ||
| Infectious L3 larvae | 1 | Infectious L3 larvae | ||
| Infectious L3 larvae, incubated | 1 | Infectious L3 larvae | culture media |
SRP058598: Ancylostoma ceylanicum Genome Sequencing
The Genome Institute
Ancylostoma ceylanicum Project page
Parasitic Nematode Project
Project Information
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Differential expression
Design: 13 conditions
| Condition | num. replicates | Developmental stage | Sex | Culture conditions |
|---|---|---|---|---|
| 24hr small intestine | 2 | 24hr small intestine | ||
| 24hr stomach | 3 | 24hr stomach | ||
| 48hr L3 | 4 | 48hr L3 | ||
| 72hr L3 | 3 | 72hr L3 | ||
| 72hr L4 | 2 | 72hr L4 | ||
| L3 | 4 | L3 | ||
| L4 8day adult female | 2 | L4 8day adult | female | |
| adult female | 5 | adult | female | |
| adult male | 7 | adult | male | |
| dog feces, activated (L3) | 3 | L3 | dog feces, activated | |
| dog feces, infective (L3) | 3 | L3 | dog feces, infective | |
| dog feces, nonactivated (L3) | 1 | L3 | dog feces, nonactivated | |
| gut | 2 | gut |
Release 19 - March 2024
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