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RNASeq Caenorhabditis brenneri

Caenorhabditis brenneri - public RNASeq studies

Analysed

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

Design: 2 conditions

Condition num. replicates Developmental stage Rna Strain
L4 & adult females 3 L4 & adult females poly-A RNA PB2801 (WT)
L4 & adult males 3 L4 & adult males poly-A RNA PB2801 (WT)

SRP042651: Comparative population genomics in 76 metazoan species (popphyl project)

University of Montpellier 2

Comparative population genomics in animals uncovers the determinants of genetic diversity. (Romiguier .. Galtier, 2014)
Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus. (Whitelaw .. Cooke, 2016)
Link to the popphyl project

Design: 10 conditions

Condition num. replicates Biomaterial provider Geographic location Latitude and longitude Organism part
Costa Rica 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France Costa Rica 9.748917 -83.753428 whole body (pool of siblings)
French Guyana Cacao 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France French Guyana Cacao 4.5489276 -52.491857 whole body (pool of siblings)
French Guyana Cayenne 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France French Guyana Cayenne 2676224 -52.3269 whole body (pool of siblings)
French Guyana Comte 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France French Guyana Comte river at the cross with RN2 road 4.592852 -52.356262 whole body (pool of siblings)
Guadeloupe 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France Guadeloupe 16.265 -61.551 whole body (pool of siblings)
India Allepey Kerala 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France India Allepey Kerala 9.4980667 76.3388484 whole body (pool of siblings)
India Kanjirapally Kerala 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France India Kanjirapally Kerala 9.55951 76.79467 whole body (pool of siblings)
India Poovar Kerala 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France India Poovar Kerala 8.3174333 77.0712972 whole body (pool of siblings)
Reunion 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France Reunion -21.045555 55.6875 whole body (pool of siblings)
Thailand Krabi 1 Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France Thailand Krabi nearby the Sai Tai beach 8.0862997 98.9062835 whole body (pool of siblings)

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP159488: Illumina sequencing of 4 Caenorhabditis species L4-early adult polyA+ 50bp PE RNAseq

Centre for Genomic Regulation (CRG)

1 run in ENA

SRP191526: Vertical transmission of RNA molecules in Caenorhabditis nematodes

Washington University in St. Louis School of Medicine

1 run in ENA