Caenorhabditis briggsae - public RNASeq studies
Table of Contents
Analysed
SRP016006: Caenorhabditis sex-specific RNAseq
Haag Lab, Department of Biology, University of Maryland
Design: 2 conditions
| Condition | num. replicates | Developmental stage | Sex | Strain |
|---|---|---|---|---|
| male - XO | 3 | L4 & adult | male - XO | AF16 (WT) |
| pseudofemale - XX | 3 | L4 & adult | pseudofemale - XX | she-1(v47) |
SRP034522: Conservation of mRNA and protein expression during development of C. elegans
Max Planck Institute of Immunobiology and Epigenetics
Design: 4 conditions
| Condition | num. replicates | Developmental stage | Strain | Temperature |
|---|---|---|---|---|
| L1 larvae | 2 | L1 larvae | AF16 | 20C |
| mixed embryos | 2 | mixed embryos | AF16 | 20C |
| mixed stages reference | 1 | mixed stages reference | AF16 | 20C |
| young adults | 1 | young adults | AF16 | 20C |
SRP173664: Caenorhabditis briggsae transcriptome and genome sequencing
University of Toronto
Design: 6 conditions
| Condition | num. replicates | Strain | Developmental stage |
|---|---|---|---|
| AF14 | 3 | AF14 | young adult |
| AF20 | 3 | AF20 | young adult |
| AF30 | 3 | AF30 | young adult |
| HK14 | 3 | HK14 | young adult |
| HK20 | 3 | HK20 | young adult |
| HK30 | 3 | HK30 | young adult |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
SRP011366: Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression
Simon Fraser University
2 runs in ENA
SRP019476: Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression
University of Toronto
2 runs in ENA
SRP067756: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing
Hong Kong Baptist University
3 runs in ENA
SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes
Washington University in St. Louis
6 runs in ENA
Release 14 - August 2019
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