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RNASeq Caenorhabditis briggsae

Caenorhabditis briggsae - public RNASeq studies

Analysed

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

Design: 2 conditions

Condition num. replicates Developmental stage Rna Strain
L4 & adult males, AF16 (WT) 3 L4 & adult males poly-A RNA AF16 (WT)
L4 & adult pseudo-females, she-1(v47) 3 L4 & adult pseudo-females poly-A RNA she-1(v47)

SRP034522: Conservation of mRNA and protein expression during development of C. elegans

Hubrecht Institute

Conservation of mRNA and protein expression during development of C. elegans. (GrĂ¼n .. Rajewsky, 2014)

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L1 larva Ce 2 L1 larva Ce organism hermaphrodite AF16
adult 1 adult organism hermaphrodite AF16
all stages Ce 1 all stages Ce organism hermaphrodite AF16
embryo Ce 2 embryo Ce organism hermaphrodite AF16

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP011366: Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression

Simon Fraser University

2 runs in ENA

SRP019476: Caenorhabditis briggsae strain:AF16 Transcriptome or Gene expression

University of Toronto

2 runs in ENA

SRP067756: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing

SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes

Washington University in St. Louis

6 runs in ENA