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RNASeq Caenorhabditis elegans

Caenorhabditis elegans - public RNASeq studies

Table of Contents

Analysed

ERP111311: RNAseq of C. elegans cultured on metformin sensitive and resistant E. coli strains with and without 50mM metformin treatment

UNIVERSITY COLLEGE LONDON

E-MTAB-7272 in ArrayExpress

Design: 16 conditions

Condition num. replicates Alias Growth condition Synonym Title Broker name Description Developmental stage Ena checklist Insdc center alias Strain
ERR2822652 1 E-MTAB-7272:C1 metformin sensitive OP50 E. coli E-MTAB-7272:C1 C1 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822653 1 E-MTAB-7272:M1 metformin sensitive OP50 E. coli E-MTAB-7272:M1 M1 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822654 1 E-MTAB-7272:R1 metformin resistant OP50-MR E. coli E-MTAB-7272:R1 R1 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822655 1 E-MTAB-7272:RM1 metformin resistant OP50-MR E. coli E-MTAB-7272:RM1 RM1 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822656 1 E-MTAB-7272:C2 metformin sensitive OP50 E. coli E-MTAB-7272:C2 C2 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822657 1 E-MTAB-7272:RM2 metformin resistant OP50-MR E. coli E-MTAB-7272:RM2 RM2 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822658 1 E-MTAB-7272:M2 metformin sensitive OP50 E. coli E-MTAB-7272:M2 M2 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822659 1 E-MTAB-7272:R2 metformin resistant OP50-MR E. coli E-MTAB-7272:R2 R2 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822660 1 E-MTAB-7272:C3 metformin sensitive OP50 E. coli E-MTAB-7272:C3 C3 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822661 1 E-MTAB-7272:M3 metformin sensitive OP50 E. coli E-MTAB-7272:M3 M3 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822662 1 E-MTAB-7272:R3 metformin resistant OP50-MR E. coli E-MTAB-7272:R3 R3 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822663 1 E-MTAB-7272:RM3 metformin resistant OP50-MR E. coli E-MTAB-7272:RM3 RM3 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822664 1 E-MTAB-7272:M4 metformin sensitive OP50 E. coli E-MTAB-7272:M4 M4 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822665 1 E-MTAB-7272:C4 metformin resistant OP50-MR E. coli E-MTAB-7272:C4 C4 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822666 1 E-MTAB-7272:R4 metformin resistant OP50-MR E. coli E-MTAB-7272:R4 R4 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2
ERR2822667 1 E-MTAB-7272:RM4 metformin resistant OP50-MR E. coli E-MTAB-7272:RM4 RM4 ArrayExpress Protocols: Worms were age-synchronised by egg-prep and were transferred onto experimental plates at the L4 stage. A maximum of 40 worms were transferred per plate for metformin-supplemented plates see adult ERC000011 UNIVERSITY COLLEGE LONDON N2

ERP113650: Differential gene analysis to identify genes expressed in CEPsh glia of C. elegans

THE ROCKEFELLER UNIVERSITY

CEPsh glia were isolated from C. elegans mix larvae population by FACS, based on expression of a GFP marker under control of the CEPsh glia-specific marker hlh-17. All other cells, which are not expressing GFP, were collected separately for control. RNA reads from GFP-positive and GFP-negative samples were compared to identify CEPsh glia-enriched genes.

Design: 6 conditions

Condition num. replicates Alias Description Synonym Title Cell type Developmental stage Ena checklist Insdc center alias
ERR3148075 1 1 GFP positive CEPsh glia, repeat 1 1 GFP positive CEPsh glia, repeat 1 ERC000011 THE ROCKEFELLER UNIVERSITY
ERR3148076 1 2 GFP positive CEPsh glia, repeat 2 2 GFP positive CEPsh glia, repeat 2 CEPsh glia Mix larvae stages (L2-L3) ERC000011 THE ROCKEFELLER UNIVERSITY
ERR3148077 1 3 GFP positive CEPsh glia, repeat 3 3 GFP positive CEPsh glia, repeat 3 CEPsh glia Mix larvae stages (L2-L3) ERC000011 THE ROCKEFELLER UNIVERSITY
ERR3148078 1 4 GFP negative cells, repeat 1 4 GFP negative cells, repeat 1 Mix larvae stages (L2-L3) ERC000011 THE ROCKEFELLER UNIVERSITY
ERR3148079 1 5 GFP negative cells, repeat 2 5 GFP negative cells, repeat 2 Mix larvae stages (L2-L3) ERC000011 THE ROCKEFELLER UNIVERSITY
ERR3148080 1 6 GFP negative cells, repeat 3 6 GFP negative cells, repeat 3 Mix larvae stages (L2-L3) ERC000011 THE ROCKEFELLER UNIVERSITY

ERP115535: dsRNA uptake in Caenorhabditis elegans

GURDON INSTITUTE

long RNA sequencing and primary and secondary small RNA sequencing of Caenorhabditis wild type and dsRNA uptake mutants

Design: 20 conditions

Condition num. replicates Alias Description Synonym Title Ena checklist Insdc center alias
ERR3346256 1 01_wild_type_L4_longRNA.fq.gz 01_wild_type_L4_longRNA.fq.gz 01_wild_type_L4_longRNA.fq.gz 01_wild_type_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346257 1 02_sid-2_qt142_L4_longRNA.fq.gz 02_sid-2_qt142_L4_longRNA.fq.gz 02_sid-2_qt142_L4_longRNA.fq.gz 02_sid-2_qt142_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346258 1 03_sid-2_mj465_L4_longRNA.fq.gz 03_sid-2_mj465_L4_longRNA.fq.gz 03_sid-2_mj465_L4_longRNA.fq.gz 03_sid-2_mj465_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346259 1 04_wild_type_L4_longRNA.fq.gz 04_wild_type_L4_longRNA.fq.gz 04_wild_type_L4_longRNA.fq.gz 04_wild_type_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346260 1 05_sid-2_qt142_L4_longRNA.fq.gz 05_sid-2_qt142_L4_longRNA.fq.gz 05_sid-2_qt142_L4_longRNA.fq.gz 05_sid-2_qt142_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346261 1 06_sid-2_mj465_L4_longRNA.fq.gz 06_sid-2_mj465_L4_longRNA.fq.gz 06_sid-2_mj465_L4_longRNA.fq.gz 06_sid-2_mj465_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346262 1 07_wild_type_L4_longRNA.fq.gz 07_wild_type_L4_longRNA.fq.gz 07_wild_type_L4_longRNA.fq.gz 07_wild_type_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346263 1 08_sid-2_qt142_L4_longRNA.fq.gz 08_sid-2_qt142_L4_longRNA.fq.gz 08_sid-2_qt142_L4_longRNA.fq.gz 08_sid-2_qt142_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346264 1 09_sid-2_mj465_L4_longRNA.fq.gz 09_sid-2_mj465_L4_longRNA.fq.gz 09_sid-2_mj465_L4_longRNA.fq.gz 09_sid-2_mj465_L4_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346265 1 10_wild_type_embryo_longRNA.fq.gz 10_wild_type_embryo_longRNA.fq.gz 10_wild_type_embryo_longRNA.fq.gz 10_wild_type_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346266 1 11_sid-2_qt142_embryo_longRNA.fq.gz 11_sid-2_qt142_embryo_longRNA.fq.gz 11_sid-2_qt142_embryo_longRNA.fq.gz 11_sid-2_qt142_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346267 1 12_sid-2_mj465_embryo_longRNA.fq.gz 12_sid-2_mj465_embryo_longRNA.fq.gz 12_sid-2_mj465_embryo_longRNA.fq.gz 12_sid-2_mj465_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346269 1 14_sid-2_qt142_embryo_longRNA.fq.gz 14_sid-2_qt142_embryo_longRNA.fq.gz 14_sid-2_qt142_embryo_longRNA.fq.gz 14_sid-2_qt142_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346270 1 15_sid-2_mj465_embryo_longRNA.fq.gz 15_sid-2_mj465_embryo_longRNA.fq.gz 15_sid-2_mj465_embryo_longRNA.fq.gz 15_sid-2_mj465_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346271 1 16_wild_type_embryo_longRNA.fq.gz 16_wild_type_embryo_longRNA.fq.gz 16_wild_type_embryo_longRNA.fq.gz 16_wild_type_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346273 1 18_sid-2_mj465_embryo_longRNA.fq.gz 18_sid-2_mj465_embryo_longRNA.fq.gz 18_sid-2_mj465_embryo_longRNA.fq.gz 18_sid-2_mj465_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346274 1 19_wild_type_embryo_longRNA.fq.gz 19_wild_type_embryo_longRNA.fq.gz 19_wild_type_embryo_longRNA.fq.gz 19_wild_type_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346275 1 20_sid-2_qt142_embryo_longRNA.fq.gz 20_sid-2_qt142_embryo_longRNA.fq.gz 20_sid-2_qt142_embryo_longRNA.fq.gz 20_sid-2_qt142_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346276 1 21_sid-2_mj465_embryo_longRNA.fq.gz 21_sid-2_mj465_embryo_longRNA.fq.gz 21_sid-2_mj465_embryo_longRNA.fq.gz 21_sid-2_mj465_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE
ERR3346278 1 23_sid-2_qt142_embryo_longRNA.fq.gz 23_sid-2_qt142_embryo_longRNA.fq.gz 23_sid-2_qt142_embryo_longRNA.fq.gz 23_sid-2_qt142_embryo_longRNA.fq.gz ERC000011 GURDON INSTITUTE

SRP010374: Wobble Base-pairing Slows in vivo Translation Elongation in Metazoans

Stanford University

HASH(0x5995498)
Wobble base-pairing slows in vivo translation elongation in metazoans. (Stadler .. Fire, 2011)

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L1 larva Ce 6 L1 larva Ce organism hermaphrodite N2
L2 larva Ce 2 L2 larva Ce organism hermaphrodite N2
L3 larva Ce 7 L3 larva Ce organism hermaphrodite N2
L4 larva Ce 4 L4 larva Ce organism hermaphrodite N2

SRP014427: Caenorhabditis elegans ribosome profiling of miRNA targets

Stanford University

SRP015688: C. elegans linker cell transcriptome

California Institute of Technology

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L3 larva Ce, linker cell, male, PS4730 5 L3 larva Ce linker cell male PS4730
L4 larva Ce, linker cell, male, PS4730 9 L4 larva Ce linker cell male PS4730
all stages Ce, organism, hermaphrodite, N2 1 all stages Ce organism hermaphrodite N2
larva Ce, organism, hermaphrodite, N2 1 larva Ce organism hermaphrodite N2

SRP017621: Using RNA-seq to identify transcriptional targets of MAB-5 in C. elegans

University of Kansas

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
LE2544 8 L1 larva Ce organism hermaphrodite LE2544
LE2962 6 L1 larva Ce organism hermaphrodite LE2962
LE2963 6 L1 larva Ce organism hermaphrodite LE2963
LE3037 6 L1 larva Ce organism hermaphrodite LE3037

SRP029448: Spatiotemporal embryonic transcriptomics reveals the evolutionary history of the endoderm germ layer

Yanai, Biology, Technion - Israel Institute of Technology

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. (Hashimshony .. Yanai, 2015)

Design: 78 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
110 min post first-cleavage, AB 2 110 min post first-cleavage AB hermaphrodite N2
110 min post first-cleavage, C 2 110 min post first-cleavage C hermaphrodite N2
110 min post first-cleavage, E 1 110 min post first-cleavage E hermaphrodite N2
110 min post first-cleavage, MS 3 110 min post first-cleavage MS hermaphrodite N2
110 min post first-cleavage, ventral cord blast cell 1 110 min post first-cleavage ventral cord blast cell hermaphrodite N2
120 min post first-cleavage, organism 1 120 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, AB 1 140 min post first-cleavage AB hermaphrodite N2
140 min post first-cleavage, C 1 140 min post first-cleavage C hermaphrodite N2
140 min post first-cleavage, E 3 140 min post first-cleavage E hermaphrodite N2
140 min post first-cleavage, organism 1 140 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, ventral cord blast cell 3 140 min post first-cleavage ventral cord blast cell hermaphrodite N2
150 min post first-cleavage, organism 1 150 min post first-cleavage organism hermaphrodite N2
170 min post first-cleavage, organism 1 170 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, AB 3 180 min post first-cleavage AB hermaphrodite N2
180 min post first-cleavage, C 2 180 min post first-cleavage C hermaphrodite N2
180 min post first-cleavage, E 3 180 min post first-cleavage E hermaphrodite N2
180 min post first-cleavage, MS 2 180 min post first-cleavage MS hermaphrodite N2
180 min post first-cleavage, organism 1 180 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, ventral cord blast cell 2 180 min post first-cleavage ventral cord blast cell hermaphrodite N2
190 min post first-cleavage, organism 1 190 min post first-cleavage organism hermaphrodite N2
2-cell embryo, AB 2 2-cell embryo AB hermaphrodite N2
2-cell embryo, organism 2-cell embryo 2 organism hermaphrodite N2
20 min post first-cleavage, AB 4 20 min post first-cleavage AB hermaphrodite N2
20 min post first-cleavage, EMS 20 min post first-cleavage 3 EMS hermaphrodite N2
20 min post first-cleavage, P2 2 20 min post first-cleavage P2 hermaphrodite N2
200 min post first-cleavage, organism 1 200 min post first-cleavage organism hermaphrodite N2
210 min post first-cleavage, organism 1 210 min post first-cleavage organism hermaphrodite N2
220 min post first-cleavage, organism 2 220 min post first-cleavage organism hermaphrodite N2
240 min post first-cleavage, organism 2 240 min post first-cleavage organism hermaphrodite N2
250 min post first-cleavage, organism 1 250 min post first-cleavage organism hermaphrodite N2
270 min post first-cleavage, AB 270 min post first-cleavage 2 AB hermaphrodite N2
270 min post first-cleavage, C 1 270 min post first-cleavage C hermaphrodite N2
270 min post first-cleavage, E 3 270 min post first-cleavage E hermaphrodite N2
270 min post first-cleavage, MS 270 min post first-cleavage 2 MS hermaphrodite N2
270 min post first-cleavage, ventral cord blast cell 1 270 min post first-cleavage ventral cord blast cell hermaphrodite N2
280 min post first-cleavage, organism 1 280 min post first-cleavage organism hermaphrodite N2
290 min post first-cleavage, organism 1 290 min post first-cleavage organism hermaphrodite N2
30 min post first-cleavage, organism 1 30 min post first-cleavage organism hermaphrodite N2
310 min post first-cleavage, organism 1 310 min post first-cleavage organism hermaphrodite N2
320 min post first-cleavage, organism 1 320 min post first-cleavage organism hermaphrodite N2
340 min post first-cleavage, organism 1 340 min post first-cleavage organism hermaphrodite N2
350 min post first-cleavage, organism 1 350 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, AB 3 360 min post first-cleavage AB hermaphrodite N2
360 min post first-cleavage, E 1 360 min post first-cleavage E hermaphrodite N2
360 min post first-cleavage, MS 1 360 min post first-cleavage MS hermaphrodite N2
360 min post first-cleavage, organism 1 360 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, ventral cord blast cell 1 360 min post first-cleavage ventral cord blast cell hermaphrodite N2
380 min post first-cleavage, organism 1 380 min post first-cleavage organism hermaphrodite N2
390 min post first-cleavage, organism 1 390 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, AB 3 40 min post first-cleavage AB hermaphrodite N2
40 min post first-cleavage, C 1 40 min post first-cleavage C hermaphrodite N2
40 min post first-cleavage, E 3 40 min post first-cleavage E hermaphrodite N2
40 min post first-cleavage, MS 3 40 min post first-cleavage MS hermaphrodite N2
40 min post first-cleavage, organism 1 40 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, ventral cord blast cell 3 40 min post first-cleavage ventral cord blast cell hermaphrodite N2
400 min post first-cleavage, organism 1 400 min post first-cleavage organism hermaphrodite N2
410 min post first-cleavage, organism 1 410 min post first-cleavage organism hermaphrodite N2
420 min post first-cleavage, organism 1 420 min post first-cleavage organism hermaphrodite N2
430 min post first-cleavage, organism 1 430 min post first-cleavage organism hermaphrodite N2
440 min post first-cleavage, organism 1 440 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, AB 3 60 min post first-cleavage AB hermaphrodite N2
60 min post first-cleavage, C 3 60 min post first-cleavage C hermaphrodite N2
60 min post first-cleavage, E 3 60 min post first-cleavage E hermaphrodite N2
60 min post first-cleavage, MS 3 60 min post first-cleavage MS hermaphrodite N2
60 min post first-cleavage, organism 1 60 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, ventral cord blast cell 2 60 min post first-cleavage ventral cord blast cell hermaphrodite N2
70 min post first-cleavage, organism 1 70 min post first-cleavage organism hermaphrodite N2
80 min post first-cleavage, organism 1 80 min post first-cleavage organism hermaphrodite N2
90 min post first-cleavage, AB 2 90 min post first-cleavage AB hermaphrodite N2
90 min post first-cleavage, C 2 90 min post first-cleavage C hermaphrodite N2
90 min post first-cleavage, E 3 90 min post first-cleavage E hermaphrodite N2
90 min post first-cleavage, MS 3 90 min post first-cleavage MS hermaphrodite N2
90 min post first-cleavage, ventral cord blast cell 2 90 min post first-cleavage ventral cord blast cell hermaphrodite N2
comma embryo, AB 2 comma embryo AB hermaphrodite N2
comma embryo, C 2 comma embryo C hermaphrodite N2
comma embryo, E 2 comma embryo E hermaphrodite N2
comma embryo, MS 2 comma embryo MS hermaphrodite N2
comma embryo, ventral cord blast cell 1 comma embryo ventral cord blast cell hermaphrodite N2

SRP045110: Blastomere-specific transcriptome sequencing reveals a determinant of anterior specification in C. elegans

SRP049412: Defining soma-specific/enriched and germline-specific/enriched transcripts

SRP057305: Widespread cytoplasmic polyadenylation programs asymmetry in the germline and early embryo

Design: 23 conditions

Condition num. replicates Description title Developmental stage Organism part Source name Strain
SRR1979419 1 N2 rep1 young adult whole organism N2 rep1 N2
SRR1979420 1 N2 rep2 young adult whole organism N2 rep2 N2
SRR1979421 1 N2 rep3 young adult whole organism N2 rep3 N2
SRR1979422 1 gld-2 rep1 young adult whole organism gld-2 rep1 gld-2(q497)
SRR1979423 1 gld-2 rep2 young adult whole organism gld-2 rep2 gld-2(q497)
SRR1979424 1 gld-2 rep3 young adult whole organism gld-2 rep3 gld-2(q497)
SRR1979425 1 cbp-3 rep1 young adult whole organism cbp-3 rep1 YM19 cpb-3(bt17)
SRR1979426 1 cbp-3 rep2 young adult whole organism cbp-3 rep2 YM19 cpb-3(bt17)
SRR1979427 1 cbp-3 rep3 young adult whole organism cbp-3 rep3 YM19 cpb-3(bt17)
SRR1979428 1 gld-2 (pcb19 non targetting control RNAi) rep1 young adult whole organism gld-2 (pcb19 non targetting control RNAi) gld-2(q497)
SRR1979429 1 gld-2 (pcb19 non targetting control RNAi) rep2 young adult whole organism gld-2 (pcb19 non targetting control RNAi) gld-2(q497)
SRR1979430 1 gld-2 (parn-1 RNAi) rep1 young adult whole organism gld-2 (parn-1 RNAi) rep1 gld-2(q497)
SRR1979431 1 gld-2 (parn-1 RNAi) rep2 young adult whole organism gld-2 (parn-1 RNAi) rep2 gld-2(q497)
SRR1979432 1 gld-2 (caf-1 RNAi) rep1 young adult whole organism gld-2 caf-1 RNAi) rep1 gld-2(q497)
SRR1979433 1 gld-2 (caf-1 RNAi) rep2 young adult whole organism gld-2 (caf-1 RNAi) rep2 gld-2(q497)
SRR1979434 1 gld-2 (panl-2 RNAi) rep1 young adult whole organism gld-2 (panl-2 RNAi) rep1 gld-2(q497)
SRR1979435 1 gld-2 (panl-2 RNAi) rep2 young adult whole organism gld-2 (panl-2 RNAi) rep2 gld-2(q497)
SRR1979436 1 gld-2 (ccf-1 RNAi) rep1 young adult whole organism gld-2 (ccf-1 RNAi) rep1 gld-2(q497)
SRR1979437 1 gld-2 (ccf-1 RNAi) rep2 young adult whole organism gld-2 (ccf-1 RNAi) rep2 gld-2(q497)
SRR1979438 1 gld-2 (ccr-4 RNAi) rep1 young adult whole organism gld-2 (ccr-4 RNAi) rep1 gld-2(q497)
SRR1979439 1 gld-2 (ccr-4 RNAi) rep2 young adult whole organism gld-2 (ccr-4 RNAi) rep2 gld-2(q497)
SRR1979440 1 1+2 cell egg rep1 One and two cell embryos embryo 1+2 cell egg rep1 N2
SRR1979441 1 1+2 cell egg rep2 One and two cell embryos embryo 1+2 cell egg rep2 N2

SRP106501: Network modeling reveals genetic interactions that influence C. elegans defense against infection

Harvard University

Design: 8 conditions

Condition num. replicates Bacteria Description title Source name Time post infection Organism part
SRR5512087 1 Pseudomonas aeruginosa PA14 Pseu_4h whole animal, PA14, 4 hrs 4 hrs whole organism
SRR5512088 1 Pseudomonas aeruginosa PA14 Pseu_8h whole animal, PA14, 8 hrs 8 hrs whole organism
SRR5512089 1 Pseudomonas aeruginosa PA14 Pseu_12h whole animal, PA14, 12 hrs 12 hrs whole organism
SRR5512090 1 Pseudomonas aeruginosa PA14 Pseu_12hA whole animal, PA14, 12 hrs 12 hrs whole organism
SRR5512091 1 Pseudomonas aeruginosa PA14 Pseu_17h whole animal, PA14, 17 hrs 17 hrs whole organism
SRR5512092 1 Pseudomonas aeruginosa PA14 Pseu_22h whole animal, PA14, 22 hrs 22 hrs whole organism
SRR5512093 1 Pseudomonas aeruginosa PA14 Pseu_22hA whole animal, PA14, 22 hrs 22 hrs whole organism
SRR5512094 1 Escherichia coli OP50 OP50_22h whole animal, OP50, 22 hrs 22 hrs whole organism

SRP127019: Drug synergy slows ageing and improves healthspan through IGF and SREBP lipid signaling

Nematode Ageing Lab, Science/ Biochemistry, Yale-NUS College / NUS

Design: 53 conditions

Condition num. replicates Description title Source name Strain Developmental stage Genotype Organism part
SRR6388516 1 RCC019 Psora-1 Bristow N2 Day 6 wild type whole organism
SRR6388517 1 RCC020 Psora-2 Bristow N2 Day 6 wild type whole organism
SRR6388518 1 RCC021 Psora-3 Bristow N2 Day 6 wild type whole organism
SRR6388519 1 RCC022 Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388520 1 RCC023 Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388521 1 RCC024 Allan-3 Bristow N2 Day 6 wild type whole organism
SRR6388522 1 RCC025 Rif-1 Bristow N2 Day 6 wild type whole organism
SRR6388523 1 RCC026 Rif-2 Bristow N2 Day 6 wild type whole organism
SRR6388524 1 RCC027 Rif-3 Bristow N2 Day 6 wild type whole organism
SRR6388525 1 RCC028 Metf-1 Bristow N2 Day 6 wild type whole organism
SRR6388526 1 RCC029 Metf-2 Bristow N2 Day 6 wild type whole organism
SRR6388527 1 RCC030 Metf-3 Bristow N2 Day 6 wild type whole organism
SRR6388528 1 RCC031 Rap-1 Bristow N2 Day 6 wild type whole organism
SRR6388529 1 RCC032 Rap-2 Bristow N2 Day 6 wild type whole organism
SRR6388530 1 RCC033 Rap-3 Bristow N2 Day 6 wild type whole organism
SRR6388531 1 RCC037 N2control-1 Bristow N2 Day 6 wild type whole organism
SRR6388532 1 RCC038 N2control-2 Bristow N2 Day 6 wild type whole organism
SRR6388533 1 RCW001 Rap+Rif-1 Bristow N2 Day 6 wild type whole organism
SRR6388534 1 RCW002 Rap+Rif-2 Bristow N2 Day 6 wild type whole organism
SRR6388535 1 RCW003 Rap+Rif-3 Bristow N2 Day 6 wild type whole organism
SRR6388536 1 RCW004 Rap+Psora-1 Bristow N2 Day 6 wild type whole organism
SRR6388537 1 RCW005 Rap+Psora-2 Bristow N2 Day 6 wild type whole organism
SRR6388538 1 RCW006 Rap+Psora-3 Bristow N2 Day 6 wild type whole organism
SRR6388539 1 RCW007 Rif+Psora-1 Bristow N2 Day 6 wild type whole organism
SRR6388540 1 RCW008 Rif+Psora-2 Bristow N2 Day 6 wild type whole organism
SRR6388541 1 RCW009 Rif+Psora-3 Bristow N2 Day 6 wild type whole organism
SRR6388542 1 RCW010 Rap+Rif+Psora-1 Bristow N2 Day 6 wild type whole organism
SRR6388543 1 RCW011 Rap+Rif+Psora-2 Bristow N2 Day 6 wild type whole organism
SRR6388544 1 RCW012 Rap+Rif+Psora-3 Bristow N2 Day 6 wild type whole organism
SRR6388545 1 RCW013 Rif+Psora+Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388546 1 RCW014 Rif+Psora+Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388547 1 RCW015 Rif+Psora+Allan-3 Bristow N2 Day 6 wild type whole organism
SRR6388548 1 RCW016 Rif+Rap+Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388549 1 RCW017 Rif+Rap+Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388550 1 RCW018 Rif+Rap+Allan-3 Bristow N2 Day 6 wild type whole organism
SRR6388551 1 RCW019 N2control-1 Bristow N2 Day 6 wild type whole organism
SRR6388552 1 RCW020 N2control-2 Bristow N2 Day 6 wild type whole organism
SRR6388553 1 RCW021 Rap+Met-1 Bristow N2 Day 6 wild type whole organism
SRR6388554 1 RCW022 Rap+Met-2 Bristow N2 Day 6 wild type whole organism
SRR6388555 1 RCW023 Rap+Met-3 Bristow N2 Day 6 wild type whole organism
SRR6388556 1 RCW024 Rap+Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388557 1 RCW025 Rap+Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388558 1 RCW026 Rif+Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388559 1 RCW027 Rif+Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388560 1 RCW028 Rif+Allan-3 Bristow N2 Day 6 wild type whole organism
SRR6388561 1 RCW029 Psora+Allan-1 Bristow N2 Day 6 wild type whole organism
SRR6388562 1 RCW030 Psora+Allan-2 Bristow N2 Day 6 wild type whole organism
SRR6388563 1 RCW031 Psora+Allan-3 Bristow N2 Day 6 wild type whole organism
SRR6388564 1 RCW032 eat-1 ad1116 Day 6 wild type whole organism
SRR6388565 1 RCW033 eat-2 ad1116 Day 6 wild type whole organism
SRR6388566 1 RCW034 eat-3 ad1116 Day 6 wild type whole organism
SRR6388567 1 RCW039 N2-control-1 Bristow N2 Day 6 wild type whole organism
SRR6388568 1 RCW040 N2-control-2 Bristow N2 Day 6 wild type whole organism

SRP133825: Identification of DAF-16/FoxO targets associated with longevity

DCM&B, University of Michigan

Design: 50 conditions

Condition num. replicates Description title Genotype Phenotype Developmental stage Organism part Source name
SRR6798206 1 22921-GLP-1(E2141) GLP-1(E2141) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798207 1 22922-DAF-16(MU86);GLP-1(E2141) DAF-16(MU86);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798208 1 22923-DAF-16(MG54);GLP-1(E2141) DAF-16(MG54);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798209 1 22928-GLP-1(E2141) GLP-1(E2141) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798210 1 22929--DAF-16(MU86);GLP-1(E2141) DAF-16(MU86);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798211 1 22930-DAF-16(MG54);GLP-1(E2141) DAF-16(MG54);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798212 1 22935-GLP-1(E2141) GLP-1(E2141) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798213 1 22936--DAF-16(MU86);GLP-1(E2141) DAF-16(MU86);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798214 1 22937-DAF-16(MG54);GLP-1(E2141) DAF-16(MG54);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798215 1 22942-GLP-1(E2141) GLP-1(E2141) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798216 1 22943--DAF-16(MU86);GLP-1(E2141) DAF-16(MU86);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798217 1 22944-DAF-16(MG54);GLP-1(E2141) DAF-16(MG54);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798218 1 22949-GLP-1(E2141) GLP-1(E2141) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798219 1 22950-DAF-16(MU86);GLP-1(E2141) DAF-16(MU86);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798220 1 22951-DAF-16(MG54);GLP-1(E2141) DAF-16(MG54);GLP-1(E2141) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798221 1 28339-WT wild type WT YOUNG ADULT whole organism whole organism
SRR6798222 1 28340-DAF-2(E1368) DAF-2(E1368) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798223 1 28341-DAF-16(MG54);DAF-2(E1368) DAF-16(MG54);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798224 1 28342-DAF-16(MU86);DAF-2(E1368) DAF-16(MU86);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798225 1 28343-DAF-2(E1370) DAF-2(E1370) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798226 1 28344-DAF-16(MG54);DAF-2(E1370) DAF-16(MG54);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798227 1 28345-DAF-16(MU86);DAF-2(E1370) DAF-16(MU86);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798228 1 28346-WT wild type WT YOUNG ADULT whole organism whole organism
SRR6798229 1 28347-DAF-2(E1368) DAF-2(E1368) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798230 1 28348-DAF-16(MG54);DAF-2(E1368) DAF-16(MG54);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798231 1 28349-DAF-16(MU86);DAF-2(E1368) DAF-16(MU86);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798232 1 28350-DAF-2(E1370) DAF-2(E1370) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798233 1 28351-DAF-16(MG54);DAF-2(E1370) DAF-16(MG54);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798234 1 28352-DAF-16(MU86);DAF-2(E1370) DAF-16(MU86);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798235 1 28353-WT wild type WT YOUNG ADULT whole organism whole organism
SRR6798236 1 28354-DAF-2(E1368) DAF-2(E1368) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798237 1 28355-DAF-16(MG54);DAF-2(E1368) DAF-16(MG54);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798238 1 28356-DAF-16(MU86);DAF-2(E1368) DAF-16(MU86);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798239 1 28357-DAF-2(E1370) DAF-2(E1370) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798240 1 28358-DAF-16(MG54);DAF-2(E1370) DAF-16(MG54);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798241 1 28359-DAF-16(MU86);DAF-2(E1370) DAF-16(MU86);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798242 1 28360-WT wild type WT YOUNG ADULT whole organism whole organism
SRR6798243 1 28361-DAF-2(E1368) DAF-2(E1368) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798244 1 28362-DAF-16(MG54);DAF-2(E1368) DAF-16(MG54);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798245 1 28363-DAF-16(MU86);DAF-2(E1368) DAF-16(MU86);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798246 1 28364-DAF-2(E1370) DAF-2(E1370) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798247 1 28365-DAF-16(MG54);DAF-2(E1370) DAF-16(MG54);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798248 1 28366-DAF-16(MU86);DAF-2(E1370) DAF-16(MU86);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798249 1 28367-WT wild type WT YOUNG ADULT whole organism whole organism
SRR6798250 1 28368-DAF-2(E1368) DAF-2(E1368) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798251 1 28369-DAF-16(MG54);DAF-2(E1368) DAF-16(MG54);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798252 1 28370-DAF-16(MU86);DAF-2(E1368) DAF-16(MU86);DAF-2(E1368) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798253 1 28371-DAF-2(E1370) DAF-2(E1370) LONG LIVED YOUNG ADULT whole organism whole organism
SRR6798254 1 28372-DAF-16(MG54);DAF-2(E1370) DAF-16(MG54);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism
SRR6798255 1 28373-DAF-16(MU86);DAF-2(E1370) DAF-16(MU86);DAF-2(E1370) LONGEVITY SUPPRESSED YOUNG ADULT whole organism whole organism

SRP133834: Transcriptome of microbiome for the nematode Caenorhabditis elegans

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Design: 82 conditions

Condition num. replicates Description title Timepoint Treatment Medium Source name Strain Temperature
SRR6799134 1 OP_L2_rep1 L2 (6h) OP50 mNGM whole body N2/Wide type 20C
SRR6799135 1 OP_L3_rep1 L3 (24h) OP50 mNGM whole body N2/Wide type 20C
SRR6799136 1 OP_L4_rep1 L4 (48h) OP50 mNGM whole body N2/Wide type 20C
SRR6799137 1 OP_ad1_rep1 adults (72h) OP50 mNGM whole body N2/Wide type 20C
SRR6799138 1 OP_ad3_rep1 adults (3 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799139 1 OP_ad7_rep1 adults (7 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799140 1 MYb71_L2_rep1 L2 (6h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799141 1 MYb71_L3_rep1 L3 (24h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799142 1 MYb71_L4_rep1 L4 (48h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799143 1 MYb71_ad1_rep1 adults (72h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799144 1 MYb71_ad3_rep1 adults (3 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799145 1 MYb71_ad7_rep1 adults (7 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799146 1 MYb65_L2_rep1 L2 (6h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799147 1 MYb65_L3_rep1 L3 (24h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799148 1 MYb65_L4_rep1 L4 (48h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799149 1 MYb65_ad1_rep1 adults (72h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799150 1 MYb65_ad3_rep1 adults (3 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799151 1 MYb65_ad7_rep1 adults (7 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799152 1 OP_L2_rep2 L2 (6h) OP50 mNGM whole body N2/Wide type 20C
SRR6799153 1 OP_L3_rep2 L3 (24h) OP50 mNGM whole body N2/Wide type 20C
SRR6799154 1 OP_L4_rep2 L4 (48h) OP50 mNGM whole body N2/Wide type 20C
SRR6799155 1 OP_ad1_rep2 adults (72h) OP50 mNGM whole body N2/Wide type 20C
SRR6799156 1 OP_ad3_rep2 adults (3 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799157 1 OP_ad7_rep2 adults (7 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799158 1 Mix_L2_rep1 L2 (6h) Mix mNGM whole body N2/Wide type 20C
SRR6799159 1 Mix_L3_rep1 L3 (24h) Mix mNGM whole body N2/Wide type 20C
SRR6799160 1 Mix_L4_rep1 L4 (48h) Mix mNGM whole body N2/Wide type 20C
SRR6799161 1 Mix_ad1_rep1 adults (72h) Mix mNGM whole body N2/Wide type 20C
SRR6799162 1 Mix_ad3_rep1 adults (3 days) Mix mNGM whole body N2/Wide type 20C
SRR6799163 1 Mix_ad7_rep1 adults (7 days) Mix mNGM whole body N2/Wide type 20C
SRR6799164 1 MYb71_L2_rep2 L2 (6h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799165 1 MYb71_L3_rep2 L3 (24h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799166 1 MYb71_L4_rep2 L4 (48h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799167 1 MYb71_ad1_rep2 adults (72h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799168 1 MYb71_ad3_rep2 adults (3 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799169 1 MYb71_ad7_rep2 adults (7 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799170 1 MYb65_L2_rep2 L2 (6h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799171 1 MYb65_L3_rep2 L3 (24h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799172 1 MYb65_L4_rep2 L4 (48h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799173 1 MYb65_ad1_rep2 adults (72h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799174 1 MYb65_ad3_rep2 adults (3 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799175 1 MYb65_ad7_rep2 adults (7 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799176 1 OP_L2_rep3 L2 (6h) OP50 mNGM whole body N2/Wide type 20C
SRR6799177 1 OP_L3_rep3 L3 (24h) OP50 mNGM whole body N2/Wide type 20C
SRR6799178 1 Mix_L2_rep2 L2 (6h) Mix mNGM whole body N2/Wide type 20C
SRR6799179 1 Mix_L3_rep2 L3 (24h) Mix mNGM whole body N2/Wide type 20C
SRR6799180 1 Mix_L4_rep2 L4 (48h) Mix mNGM whole body N2/Wide type 20C
SRR6799181 1 Mix_ad1_rep2 adults (72h) Mix mNGM whole body N2/Wide type 20C
SRR6799182 1 Mix_ad3_rep2 adults (3 days) Mix mNGM whole body N2/Wide type 20C
SRR6799183 1 Mix_ad7_rep2 adults (7 days) Mix mNGM whole body N2/Wide type 20C
SRR6799184 1 MYb71_L2_rep3 L2 (6h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799185 1 MYb71_L3_rep3 L3 (24h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799186 1 MYb71_L4_rep3 L4 (48h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799187 1 MYb71_ad1_rep3 adults (72h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799188 1 MYb71_ad3_rep3 adults (3 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799189 1 MYb71_ad7_rep3 adults (7 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799190 1 MYb65_ad1_rep3 adults (72h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799191 1 MYb65_ad3_rep3 adults (3 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799192 1 MYb65_ad7_rep3 adults (7 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799193 1 OP_L2_rep4 L2 (6h) OP50 mNGM whole body N2/Wide type 20C
SRR6799194 1 OP_L3_rep4 L3 (24h) OP50 mNGM whole body N2/Wide type 20C
SRR6799195 1 OP_L4_rep3 L4 (48h) OP50 mNGM whole body N2/Wide type 20C
SRR6799196 1 OP_ad1_rep3 adults (72h) OP50 mNGM whole body N2/Wide type 20C
SRR6799197 1 OP_ad3_rep3 adults (3 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799198 1 OP_ad7_rep3 adults (7 days) OP50 mNGM whole body N2/Wide type 20C
SRR6799199 1 Mix_L2_rep3 L2 (6h) Mix mNGM whole body N2/Wide type 20C
SRR6799200 1 Mix_L3_rep3 L3 (24h) Mix mNGM whole body N2/Wide type 20C
SRR6799201 1 Mix_L4_rep3 L4 (48h) Mix mNGM whole body N2/Wide type 20C
SRR6799202 1 Mix_ad1_rep3 adults (72h) Mix mNGM whole body N2/Wide type 20C
SRR6799203 1 Mix_ad3_rep3 adults (3 days) Mix mNGM whole body N2/Wide type 20C
SRR6799204 1 Mix_ad7_rep3 adults (7 days) Mix mNGM whole body N2/Wide type 20C
SRR6799205 1 MYb71_L2_rep4 L2 (6h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799206 1 MYb71_L3_rep4 L3 (24h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799207 1 MYb71_L4_rep4 L4 (48h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799208 1 MYb71_ad1_rep4 adults (72h) MYb71 mNGM whole body N2/Wide type 20C
SRR6799209 1 MYb71_ad3_rep4 adults (3 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799210 1 MYb71_ad7_rep4 adults (7 days) MYb71 mNGM whole body N2/Wide type 20C
SRR6799211 1 MYb65_L2_rep3 L3 (24h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799212 1 MYb65_L3_rep3 L4 (48h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799213 1 MYb65_ad1_rep4 adults (72h) MYb65 mNGM whole body N2/Wide type 20C
SRR6799214 1 MYb65_ad3_rep4 adults (3 days) MYb65 mNGM whole body N2/Wide type 20C
SRR6799215 1 MYb65_ad7_rep4 adults (7 days) MYb65 mNGM whole body N2/Wide type 20C

SRP139555: Next Generation Sequencing and Quantitative Analysis of mRNAs in Wild Type and ceh-60 Mutant Caenorhabditis elegans

Integrative Program for Biological & Genome Sciences, University of North Carolina at Chapel Hill

CEH-60/PBX and UNC-62/MEIS Coordinate a Metabolic Switch that Supports Reproduction in C. elegans. (Dowen, 2019)

Design: 24 conditions

Condition num. replicates Description title Developmental stage Genotype Strain Source name
SRR6983668 1 N2_d1Ad_rep1 Day 1 adults wild type N2 Whole animals
SRR6983669 1 N2_d1Ad_rep2 Day 1 adults wild type N2 Whole animals
SRR6983670 1 N2_d1Ad_rep3 Day 1 adults wild type N2 Whole animals
SRR6983671 1 N2_d4Ad_rep1 Day 4 adults wild type N2 Whole animals
SRR6983672 1 N2_d4Ad_rep2 Day 4 adults wild type N2 Whole animals
SRR6983673 1 N2_d4Ad_rep3 Day 4 adults wild type N2 Whole animals
SRR6983674 1 ceh-60_d1Ad_rep1 Day 1 adults ceh-60(ok1485) DLS357 Whole animals
SRR6983675 1 ceh-60_d1Ad_rep2 Day 1 adults ceh-60(ok1485) DLS357 Whole animals
SRR6983676 1 ceh-60_d1Ad_rep3 Day 1 adults ceh-60(ok1485) DLS357 Whole animals
SRR6983677 1 ceh-60_d4Ad_rep1 Day 4 adults ceh-60(ok1485) DLS357 Whole animals
SRR6983678 1 ceh-60_d4Ad_rep2 Day 4 adults ceh-60(ok1485) DLS357 Whole animals
SRR6983679 1 ceh-60_d4Ad_rep3 Day 4 adults ceh-60(ok1485) DLS357 Whole animals
SRR8255699 1 pqm-1_ok485_d1Ad_rep1 Day 1 adults pqm-1(ok485) DLS421 Whole animals
SRR8255700 1 pqm-1_ok485_d1Ad_rep2 Day 1 adults pqm-1(ok485) DLS421 Whole animals
SRR8255701 1 pqm-1_ok485_d1Ad_rep3 Day 1 adults pqm-1(ok485) DLS421 Whole animals
SRR8255702 1 pqm-1_rhd90_d1Ad_rep1 Day 1 adults pqm-1(rhd90) DLS424 Whole animals
SRR8255703 1 pqm-1_rhd90_d1Ad_rep2 Day 1 adults pqm-1(rhd90) DLS424 Whole animals
SRR8255704 1 pqm-1_rhd90_d1Ad_rep3 Day 1 adults pqm-1(rhd90) DLS424 Whole animals
SRR8255705 1 ceh-60_pqm-1_ok485_d1Ad_rep1 Day 1 adults ceh-60(ok1485); pqm-1(ok485) DLS420 Whole animals
SRR8255706 1 ceh-60_pqm-1_ok485_d1Ad_rep2 Day 1 adults ceh-60(ok1485); pqm-1(ok485) DLS420 Whole animals
SRR8255707 1 ceh-60_pqm-1_ok485_d1Ad_rep3 Day 1 adults ceh-60(ok1485); pqm-1(ok485) DLS420 Whole animals
SRR8255708 1 ceh-60_pqm-1_rhd90_d1Ad_rep1 Day 1 adults ceh-60(ok1485); pqm-1(rhd90) DLS423 Whole animals
SRR8255709 1 ceh-60_pqm-1_rhd90_d1Ad_rep2 Day 1 adults ceh-60(ok1485); pqm-1(rhd90) DLS423 Whole animals
SRR8255710 1 ceh-60_pqm-1_rhd90_d1Ad_rep3 Day 1 adults ceh-60(ok1485); pqm-1(rhd90) DLS423 Whole animals

SRP139961: Differential expression analysis of wildtype, atfs-1(tm4919) and zip-3(gk3164) mutant with next generation sequencing

U Mass Medical School

Design: 18 conditions

Condition num. replicates Description title Genotype Source name Developmental stage Organism part
SRR7001694 1 wildtype fed with control RNAi, biological rep1 wild type wildtype fed with control RNAi L4 whole organism
SRR7001695 1 wildtype fed with control RNAi, biological rep2 wild type wildtype fed with control RNAi L4 whole organism
SRR7001696 1 wildtype fed with control RNAi, biological rep3 wild type wildtype fed with control RNAi L4 whole organism
SRR7001697 1 wildtype fed with spg-7 RNAi, biological rep1 wild type wildtype fed with spg-7 RNAi L4 whole organism
SRR7001698 1 wildtype fed with spg-7 RNAi, biological rep2 wild type wildtype fed with spg-7 RNAi L4 whole organism
SRR7001699 1 wildtype fed with spg-7 RNAi, biological rep3 wild type wildtype fed with spg-7 RNAi L4 whole organism
SRR7001700 1 zip-3 (gk3164) fed with control RNAi, biological rep1 zip-3(gk3164) zip-3 (gk3164) fed with control RNAi L4 whole organism
SRR7001701 1 zip-3 (gk3164) fed with control RNAi, biological rep2 zip-3(gk3164) zip-3 (gk3164) fed with control RNAi L4 whole organism
SRR7001702 1 zip-3 (gk3164) fed with control RNAi, biological rep3 zip-3(gk3164) zip-3 (gk3164) fed with control RNAi L4 whole organism
SRR7001703 1 zip-3 (gk3164) fed with spg-7 RNAi, biological rep1 zip-3(gk3164) zip-3 (gk3164) fed with spg-7 RNAi L4 whole organism
SRR7001704 1 zip-3 (gk3164) fed with spg-7 RNAi, biological rep2 zip-3(gk3164) zip-3 (gk3164) fed with spg-7 RNAi L4 whole organism
SRR7001705 1 zip-3 (gk3164) fed with spg-7 RNAi, biological rep3 zip-3(gk3164) zip-3 (gk3164) fed with spg-7 RNAi L4 whole organism
SRR7001706 1 atfs-1 (tm4919) fed with control RNAi, biological rep1 atfs-1(tm4919) atfs-1 (tm4919) fed with control RNAi L4 whole organism
SRR7001707 1 atfs-1 (tm4919) fed with control RNAi, biological rep2 atfs-1(tm4919) atfs-1 (tm4919) fed with control RNAi L4 whole organism
SRR7001708 1 atfs-1 (tm4919) fed with control RNAi, biological rep3 atfs-1(tm4919) atfs-1 (tm4919) fed with control RNAi L4 whole organism
SRR7001709 1 atfs-1 (tm4919) fed with spg-7 RNAi, biological rep1 atfs-1(tm4919) atfs-1 (tm4919) fed with spg-7 RNAi L4 whole organism
SRR7001710 1 atfs-1 (tm4919) fed with spg-7 RNAi, biological rep2 atfs-1(tm4919) atfs-1 (tm4919) fed with spg-7 RNAi L4 whole organism
SRR7001711 1 atfs-1 (tm4919) fed with spg-7 RNAi, biological rep3 atfs-1(tm4919) atfs-1 (tm4919) fed with spg-7 RNAi L4 whole organism

SRP145139: mRNA-seq comparison of C. elegans L1 larvae with parents experiencing dietary restriction or ad libitum conditions

Duke University

Design: 7 conditions

Condition num. replicates Description title Parental diet Source name Strain
SRR7140967 1 L1-AL-A AL L1 larvae N2
SRR7140968 1 L1-AL-B AL L1 larvae N2
SRR7140969 1 L1-AL-C AL L1 larvae N2
SRR7140970 1 L1-DR-A DR L1 larvae N2
SRR7140971 1 L1-DR-B DR L1 larvae N2
SRR7140972 1 L1-DR-C DR L1 larvae N2
SRR7140973 1 L1-DR-D DR L1 larvae N2

SRP149360: Gene expression regulated by warm temperature in C. elegans

Chongqing University

Histone acetylation promotes long-lasting defense responses and longevity following early life heat stress. (Zhou .. Tang, 2019)

Design: 6 conditions

Condition num. replicates Culture temperature Description title Developmental stage Source name Strain
SRR7235735 1 15C SSP-15 rep1 L4 whole worms N2
SRR7235736 1 15C SSP-15 rep2 L4 whole worms N2
SRR7235737 1 15C SSP-15 rep3 L4 whole worms N2
SRR7235738 1 25C SSP-25 rep1 L4 whole worms N2
SRR7235739 1 25C SSP-25 rep2 L4 whole worms N2
SRR7235740 1 25C SSP-25 rep3 L4 whole worms N2

SRP150084: Microtubule regulators act in the nervous system to modulate fat metabolism and longevity through DAF-16 in C. elegans

Chen Lab, Barshop Institute, Universality of Texas Health Science Center at San Antonio

Microtubule regulators act in the nervous system to modulate fat metabolism and longevity through DAF-16 in C. elegans. (Xu .. Chen, 2019)

Design: 15 conditions

Condition num. replicates Description title Genotype Source name
SRR7281439 1 Ctrl rep1 wild type Ctrl rep1
SRR7281440 1 Ctrl rep2 wild type Ctrl rep2
SRR7281441 1 Ctrl rep3 wild type Ctrl rep3
SRR7281442 1 Efa6 KO rep1 Efa6-/- Efa6 KO rep1
SRR7281443 1 Efa6 KO rep2 Efa6-/- Efa6 KO rep2
SRR7281444 1 Efa6 KO rep3 Efa6-/- Efa6 KO rep3
SRR7281445 1 Hdac6 KO rep1 Hdac6-/- Hdac6 KO rep1
SRR7281446 1 Hdac6 KO rep2 Hdac6-/- Hdac6 KO rep2
SRR7281447 1 Hdac6 KO rep3 Hdac6-/- Hdac6 KO rep3
SRR7281448 1 Ptl1 KO rep1 Ptl1-/- Ptl1 KO rep1
SRR7281449 1 Ptl1 KO rep2 Ptl1-/- Ptl1 KO rep2
SRR7281450 1 Ptl1 KO rep3 Ptl1-/- Ptl1 KO rep3
SRR7281451 1 Ptrn1 KO rep1 Ptrn1-/- Ptrn1 KO rep1
SRR7281452 1 Ptrn1 KO rep2 Ptrn1-/- Ptrn1 KO rep2
SRR7281453 1 Ptrn1 KO rep3 Ptrn1-/- Ptrn1 KO rep3

SRP150846: Gene expression changes in mrg-1 mutant L1 larvae compared to wild type.

Friedrich Miescher Institute

Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei. (Cabianca .. Gasser, 2019)

Design: 6 conditions

Condition num. replicates Description title Genotype Source name Strain Developmental stage
SRR7364791 1 WT_rep1 wild type N2 N2 L1 larvae
SRR7364792 1 WT_rep2 wild type N2 N2 L1 larvae
SRR7364793 1 WT_rep3 wild type N2 N2 L1 larvae
SRR7364794 1 mrg-1_rep1 mrg-1 -/- XA6227 XA6227 L1 larvae
SRR7364795 1 mrg-1_rep2 mrg-1 -/- XA6227 XA6227 L1 larvae
SRR7364796 1 mrg-1_rep3 mrg-1 -/- XA6227 XA6227 L1 larvae

SRP155352: The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans [RNA-seq]

Read Pukkila-Worley, Medicine, University of Massachusetts Medical School

The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans. (Peterson .. Pukkila-Worley, 2019)

Design: 18 conditions

Condition num. replicates Description title Genotype Source name Treatment Developmental stage Organism part Strain
SRR7606712 1 WT_DMSO rep1 wild type WT_DMSO, whole animal DMSO L4 whole organism N2
SRR7606714 1 WT_DMSO rep2 wild type WT_DMSO, whole animal DMSO L4 whole organism N2
SRR7606716 1 WT_DMSO rep3 wild type WT_DMSO, whole animal DMSO L4 whole organism N2
SRR7606718 1 WT_R24 rep1 wild type WT_R24, whole animal R24 L4 whole organism N2
SRR7606720 1 WT_R24 rep2 wild type WT_R24, whole animal R24 L4 whole organism N2
SRR7606722 1 WT_R24 rep3 wild type WT_R24, whole animal R24 L4 whole organism N2
SRR7606724 1 nhr-86(tm2590) DMSO rep1 nhr-86(tm2590) nhr-86(tm2590) DMSO, whole animal DMSO L4 whole organism N2
SRR7606726 1 nhr-86(tm2590) DMSO rep2 nhr-86(tm2590) nhr-86(tm2590) DMSO, whole animal DMSO L4 whole organism N2
SRR7606728 1 nhr-86(tm2590) DMSO rep3 nhr-86(tm2590) nhr-86(tm2590) DMSO, whole animal DMSO L4 whole organism N2
SRR7606730 1 nhr-86(tm2590) R24 rep1 nhr-86(tm2590) nhr-86(tm2590) R24, whole animal R24 L4 whole organism N2
SRR7606732 1 nhr-86(tm2590) R24 rep2 nhr-86(tm2590) nhr-86(tm2590) R24, whole animal R24 L4 whole organism N2
SRR7606734 1 nhr-86(tm2590) R24 rep3 nhr-86(tm2590) nhr-86(tm2590) R24, whole animal R24 L4 whole organism N2
SRR7606736 1 nhr-86(ums12) DMSO rep1 nhr-86(ums12) nhr-86(ums12) DMSO, whole animal DMSO L4 whole organism N2
SRR7606738 1 nhr-86(ums12) DMSO rep2 nhr-86(ums12) nhr-86(ums12) DMSO, whole animal DMSO L4 whole organism N2
SRR7606740 1 nhr-86(ums12) DMSO rep3 nhr-86(ums12) nhr-86(ums12) DMSO, whole animal DMSO L4 whole organism N2
SRR7606742 1 nhr-86(ums12) R24 rep1 nhr-86(ums12) nhr-86(ums12) R24, whole animal R24 L4 whole organism N2
SRR7606744 1 nhr-86(ums12) R24 rep2 nhr-86(ums12) nhr-86(ums12) R24, whole animal R24 L4 whole organism N2
SRR7606746 1 nhr-86(ums12) R24 rep3 nhr-86(ums12) nhr-86(ums12) R24, whole animal R24 L4 whole organism N2

SRP155700: Caenorhabditis elegans strain:N2 Raw sequence reads

Amsterdam UMC

Design: 12 conditions

Condition num. replicates Birth location Description title Sample name Cultivar Developmental stage Organism part Sex Strain
blank_1 1 blank replicate plate 1 control worms blank_1 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
blank_2 1 blank replicate plate 2 control worms blank_2 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
blank_3 1 blank replicate plate 3 control worms blank_3 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
blank_4 1 blank replicate plate 4 control worms blank_4 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
glycine_1 1 glycine replicate plate 1 glycine treated worms glycine_1 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
glycine_2 1 glycine replicate plate 2 glycine treated worms glycine_2 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
glycine_3 1 glycine replicate plate 3 glycine treated worms glycine_3 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
glycine_4 1 glycine replicate plate 4 glycine treated worms glycine_4 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
serine_1 1 serine replicate plate 1 serine treated worms serine_1 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
serine_2 1 serine replicate plate 2 serine treated worms serine_2 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
serine_3 1 serine replicate plate 3 serine treated worms serine_3 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol
serine_4 1 serine replicate plate 4 serine treated worms serine_4 Caenorhabditis Genetics Center (CGC, University of Minnesota) young adule whole organism hermaphrodite N2 Bristol

SRP157069: Transcriptomic Analysis of the Intracellular Pathogen Response (IPR)

Troemel, Cell and Developmental Biology, University of California, San Diego

Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. (Reddy .. Troemel, 2019)

Design: 15 conditions

Condition num. replicates Description title Genotype Strain Treatment Developmental stage Organism part Source name
SRR7668197 1 wild type untreated (rep 1) wild type N2 L4 stage whole organism L4 stage whole animal
SRR7668198 1 pals-22(-) untreated (rep 1) pals-22(jy3) ERT415 L4 stage whole organism L4 stage whole animal
SRR7668199 1 pals-22(-) pals-25(-) untreated (rep 1) pals-22(jy3) pals-25(jy9) ERT451 L4 stage whole organism L4 stage whole animal
SRR7668200 1 wild type untreated (rep 2) wild type N2 L4 stage whole organism L4 stage whole animal
SRR7668201 1 pals-22(-) untreated (rep 2) pals-22(jy3) ERT415 L4 stage whole organism L4 stage whole animal
SRR7668202 1 pals-22(-) pals-25(-) untreated (rep 2) pals-22(jy3) pals-25(jy9) ERT451 L4 stage whole organism L4 stage whole animal
SRR7668203 1 wild type DMSO (rep 1) wild type N2 DMSO L4 stage whole organism L4 stage whole animal
SRR7668204 1 wild type Bortezomib (rep 1) wild type N2 Bortezomib L4 stage whole organism L4 stage whole animal
SRR7668205 1 wild type DMSO (rep 2) wild type N2 DMSO L4 stage whole organism L4 stage whole animal
SRR7668206 1 wild type Bortezomib (rep 2) wild type N2 Bortezomib L4 stage whole organism L4 stage whole animal
SRR7668207 1 wild type untreated (rep 3) wild type N2 L4 stage whole organism L4 stage whole animal
SRR7668208 1 pals-22(-) untreated (rep 3) pals-22(jy3) ERT415 L4 stage whole organism L4 stage whole animal
SRR7668209 1 pals-22(-) pals-25(-) untreated (rep 3) pals-22(jy3) pals-25(jy9) ERT451 L4 stage whole organism L4 stage whole animal
SRR7668210 1 wild type DMSO (rep 3) wild type N2 DMSO L4 stage whole organism L4 stage whole animal
SRR7668211 1 wild type Bortezomib (rep 3) wild type N2 Bortezomib L4 stage whole organism L4 stage whole animal

SRP159194: Transcriptional profiling of C. elegans on pathogenic Pseudomonas aeruginosa

MIT

Global transcriptional regulation of innate immunity by ATF-7 in C. elegans. (Fletcher .. Kim, 2019)

Design: 17 conditions

Condition num. replicates Bacterial exposure Description title Genotype Developmental stage Exposure length Organism part Source name
SRR7771392 1 OP50 N2 OP50 1 N2 L4 4 hours whole organism whole animal
SRR7771393 1 PA14 N2 PA14 1 N2 L4 4 hours whole organism whole animal
SRR7771394 1 OP50 N2 OP50 2 N2 L4 4 hours whole organism whole animal
SRR7771395 1 PA14 N2 PA14 2 N2 L4 4 hours whole organism whole animal
SRR7771396 1 OP50 N2 OP50 3 N2 L4 4 hours whole organism whole animal
SRR7771397 1 PA14 N2 PA14 3 N2 L4 4 hours whole organism whole animal
SRR7771398 1 OP50 pmk-1(km25) OP50 1 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771399 1 PA14 pmk-1(km25) PA14 1 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771400 1 OP50 pmk-1(km25) OP50 2 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771401 1 PA14 pmk-1(km25) PA14 2 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771402 1 OP50 pmk-1(km25) OP50 3 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771403 1 PA14 pmk-1(km25) PA14 3 pmk-1(km25) L4 4 hours whole organism whole animal
SRR7771404 1 OP50 atf-7(qd22qd130) OP50 1 atf-7(qd22qd130) L4 4 hours whole organism whole animal
SRR7771405 1 PA14 atf-7(qd22qd130) PA14 1 atf-7(qd22qd130) L4 4 hours whole organism whole animal
SRR7771406 1 OP50 atf-7(qd22qd130) OP50 2 atf-7(qd22qd130) L4 4 hours whole organism whole animal
SRR7771407 1 PA14 atf-7(qd22qd130) PA14 2 atf-7(qd22qd130) L4 4 hours whole organism whole animal
SRR7771408 1 OP50 atf-7(qd22qd130) OP50 3 atf-7(qd22qd130) L4 4 hours whole organism whole animal

SRP160449: Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease (worm)

DBHI, Children's Hospitla of Philadelphia

Design: 28 conditions

Condition num. replicates Description title Disease Dosage Drug Genotype Group Phenotype Strain Age at rna isolation Buffer Collected by Developmental stage at treatment initiation Sex Source name
SRR7811658 1 N2_3_1 wild-type H2O N2;wild-type N2_3 wild-type N2 Bristol 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811659 1 N2_3_2 wild-type H2O N2;wild-type N2_3 wild-type N2 Bristol 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811660 1 N2_3_3 wild-type H2O N2;wild-type N2_3 wild-type N2 Bristol 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811661 1 N2_3_4 wild-type H2O N2;wild-type N2_3 wild-type N2 Bristol 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811662 1 Gas1_3_1 mitochondrial disease H2O gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Gas1_3 Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811663 1 Gas1_3_2 mitochondrial disease H2O gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Gas1_3 Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811664 1 Gas1_3_3 mitochondrial disease H2O gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Gas1_3 Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811665 1 Gas1_3_4 mitochondrial disease H2O gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Gas1_3 Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811666 1 Nac_1 mitochondrial disease Nacetylcysteine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Nac Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811667 1 Nac_2 mitochondrial disease Nacetylcysteine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Nac Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811668 1 Nac_3 mitochondrial disease Nacetylcysteine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Nac Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811669 1 Nac_4 mitochondrial disease Nacetylcysteine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Nac Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811670 1 Cys100nM_1 mitochondrial disease 100nM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100nM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811671 1 Cys100nM_2 mitochondrial disease 100nM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100nM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811672 1 Cys100nM_3 mitochondrial disease 100nM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100nM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811673 1 Cys100nM_4 mitochondrial disease 100nM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100nM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811674 1 Cys1uM_1 mitochondrial disease 1uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys1uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811675 1 Cys1uM_2 mitochondrial disease 1uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys1uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811676 1 Cys1uM_3 mitochondrial disease 1uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys1uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811677 1 Cys1uM_4 mitochondrial disease 1uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys1uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811678 1 Cys10uM_1 mitochondrial disease 10uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys10uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811679 1 Cys10uM_2 mitochondrial disease 10uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys10uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811680 1 Cys10uM_3 mitochondrial disease 10uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys10uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811681 1 Cys10uM_4 mitochondrial disease 10uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys10uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811682 1 Cys100uM_1 mitochondrial disease 100uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811683 1 Cys100uM_2 mitochondrial disease 100uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811684 1 Cys100uM_3 mitochondrial disease 100uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms
SRR7811685 1 Cys100uM_4 mitochondrial disease 100uM Cysteamine gas1;homozygous p.R290K in K09A9.5 (NDUFS2 homologue) Cys100uM Complex I deficient gas-1(fc21) 24 hour old young adult S. basal (water soluble) Erzsebet Polyak, PhD 1st day young adult hermaphrodite Whole worms

SRP161795: Comparison of gene expression in the long-lived hsb-1 mutant and hsf-1 overexpression C. elegans strains

DCM&B, University of Michigan

HSB-1 Inhibition and HSF-1 Overexpression Trigger Overlapping Transcriptional Changes To Promote Longevity in Caenorhabditis elegans. (Sural .. Hsu, 2019)

Design: 9 conditions

Condition num. replicates Description title Genotype Strain Developmental stage Organism part Source name
SRR7832306 1 N2 rep1 wild type N2 Day 1 adult whole organism Whole animal
SRR7832307 1 N2 rep2 wild type N2 Day 1 adult whole organism Whole animal
SRR7832308 1 N2 rep3 wild type N2 Day 1 adult whole organism Whole animal
SRR7832309 1 hsb-1(-) rep1 hsb-1(cg116) IV EQ150 Day 1 adult whole organism Whole animal
SRR7832310 1 hsb-1(-) rep2 hsb-1(cg116) IV EQ150 Day 1 adult whole organism Whole animal
SRR7832311 1 hsb-1(-) rep3 hsb-1(cg116) IV EQ150 Day 1 adult whole organism Whole animal
SRR7832312 1 hsf-1(OE) rep1 iqIs37[pAH76(hsf-1p::myc-hsf-1) + pRF4(rol-6p::rol-6(su1006))] EQ140 Day 1 adult whole organism Whole animal
SRR7832313 1 hsf-1(OE) rep2 iqIs37[pAH76(hsf-1p::myc-hsf-1) + pRF4(rol-6p::rol-6(su1006))] EQ140 Day 1 adult whole organism Whole animal
SRR7832314 1 hsf-1(OE) rep3 iqIs37[pAH76(hsf-1p::myc-hsf-1) + pRF4(rol-6p::rol-6(su1006))] EQ140 Day 1 adult whole organism Whole animal

SRP165288: A multi-parent recombinant inbred line population of Caenorhabditis elegans

Wageningen University

Design: 203 conditions

Condition num. replicates Isolate Sample name Strain Biomaterial provider Description title Developmental stage Growth protocol Organism part Sex
B2208 1 Y14 B2208 WN1012 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2209 1 Y22 B2209 WN1020 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2210 1 Y27 B2210 WN1025 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2211 1 YZ2 B2211 WN1052 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2212 1 YZ15 B2212 WN1065 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2213 1 YZ16 B2213 WN1066 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2214 1 YZ21 B2214 WN1070 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2215 1 YZ30 B2215 WN1079 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2216 1 YZ34 B2216 WN1083 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2217 1 YZ40 B2217 WN1089 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2218 1 YZ42 B2218 WN1091 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2219 1 YZ48 B2219 WN1097 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2220 1 ZY34 B2220 WN1156 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2221 1 ZY7 B2221 WN1131 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2222 1 YZ56 B2222 WN1105 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2223 1 YZ49 B2223 WN1098 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2497 1 Y2 B2497 WN1001 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2498 1 Y3 B2498 WN1002 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2499 1 Y5 B2499 WN1003 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2500 1 Y6 B2500 WN1004 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2501 1 Y7 B2501 WN1005 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2502 1 Y8 B2502 WN1006 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2503 1 Y9 B2503 WN1007 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2504 1 Y10 B2504 WN1008 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2505 1 Y11 B2505 WN1009 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2506 1 Y12 B2506 WN1010 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2507 1 Y13 B2507 WN1011 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2509 1 Y15 B2509 WN1013 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2510 1 Y16 B2510 WN1014 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2511 1 Y17 B2511 WN1015 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2512 1 Y18 B2512 WN1016 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2513 1 Y19 B2513 WN1017 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2514 1 Y20 B2514 WN1018 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2515 1 Y21 B2515 WN1019 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2517 1 Y23 B2517 WN1021 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2518 1 Y24 B2518 WN1022 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2519 1 Y25 B2519 WN1023 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2520 1 Y26 B2520 WN1024 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2522 1 YZ1 B2522 WN1051 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2524 1 YZ3 B2524 WN1053 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2525 1 YZ4 B2525 WN1054 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2526 1 YZ5 B2526 WN1055 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2527 1 YZ6 B2527 WN1056 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2528 1 YZ7 B2528 WN1057 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2529 1 YZ8 B2529 WN1058 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2530 1 YZ9 B2530 WN1059 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2531 1 YZ10 B2531 WN1060 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2532 1 YZ11 B2532 WN1061 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2533 1 YZ12 B2533 WN1062 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2534 1 YZ13 B2534 WN1063 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2535 1 YZ14 B2535 WN1064 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2538 1 YZ18 B2538 WN1067 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2539 1 YZ19 B2539 WN1068 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2540 1 YZ20 B2540 WN1069 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2542 1 YZ22 B2542 WN1071 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2543 1 YZ23 B2543 WN1072 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2544 1 YZ24 B2544 WN1073 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2545 1 YZ25 B2545 WN1074 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2546 1 YZ26 B2546 WN1075 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2547 1 YZ27 B2547 WN1076 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2548 1 YZ28 B2548 WN1077 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2549 1 YZ29 B2549 WN1078 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2551 1 YZ31 B2551 WN1080 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2552 1 YZ32 B2552 WN1081 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2553 1 YZ33 B2553 WN1082 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2555 1 YZ35 B2555 WN1084 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2556 1 YZ36 B2556 WN1085 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2557 1 YZ37 B2557 WN1086 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2558 1 YZ38 B2558 WN1087 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2559 1 YZ39 B2559 WN1088 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2561 1 YZ41 B2561 WN1090 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2563 1 YZ43 B2563 WN1092 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2564 1 YZ44 B2564 WN1093 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2565 1 YZ45 B2565 WN1094 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2566 1 YZ46 B2566 WN1095 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2567 1 YZ47 B2567 WN1096 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2570 1 YZ50 B2570 WN1099 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2571 1 YZ51 B2571 WN1100 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2572 1 YZ52 B2572 WN1101 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2573 1 YZ53 B2573 WN1102 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2574 1 YZ54 B2574 WN1103 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2575 1 YZ55 B2575 WN1104 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2577 1 YZ57 B2577 WN1106 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2578 1 YZ58 B2578 WN1107 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2579 1 YZ59 B2579 WN1108 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2580 1 YZ60 B2580 WN1109 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2581 1 YZ61 B2581 WN1110 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2582 1 YZ62 B2582 WN1111 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2583 1 YZ63 B2583 WN1112 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2584 1 YZ64 B2584 WN1113 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2585 1 YZ65 B2585 WN1114 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2586 1 YZ66 B2586 WN1115 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2587 1 YZ67 B2587 WN1116 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2588 1 YZ68 B2588 WN1117 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2589 1 YZ69 B2589 WN1118 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2590 1 YZ70 B2590 WN1119 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2591 1 YZ71 B2591 WN1120 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2592 1 YZ72 B2592 WN1121 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2593 1 YZ73 B2593 WN1122 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2594 1 YZ74 B2594 WN1123 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2595 1 YZ75 B2595 WN1124 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2596 1 Z1 B2596 WN1026 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2597 1 Z2 B2597 WN1027 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2598 1 Z3 B2598 WN1028 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2599 1 Z4 B2599 WN1029 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2600 1 Z5 B2600 WN1030 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2601 1 Z6 B2601 WN1031 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2602 1 Z7 B2602 WN1032 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2603 1 Z8 B2603 WN1033 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2604 1 Z10 B2604 WN1034 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2605 1 Z11 B2605 WN1035 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2606 1 Z12 B2606 WN1036 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2607 1 Z13 B2607 WN1037 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2608 1 Z14 B2608 WN1038 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2609 1 Z15 B2609 WN1039 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2610 1 Z16 B2610 WN1040 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2611 1 Z18 B2611 WN1041 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2612 1 Z20 B2612 WN1042 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2613 1 Z21 B2613 WN1043 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2614 1 Z22 B2614 WN1044 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2615 1 Z23 B2615 WN1045 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2616 1 Z24 B2616 WN1046 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2617 1 Z25 B2617 WN1047 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2618 1 Z26 B2618 WN1048 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2619 1 Z27 B2619 WN1049 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2620 1 Z30 B2620 WN1050 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2621 1 ZY1 B2621 WN1125 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2623 1 ZY3 B2623 WN1127 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2624 1 ZY4 B2624 WN1128 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2625 1 ZY5 B2625 WN1129 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2626 1 ZY6 B2626 WN1130 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2628 1 ZY8 B2628 WN1132 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2629 1 ZY10 B2629 WN1133 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2630 1 ZY11 B2630 WN1134 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2631 1 ZY12 B2631 WN1135 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2632 1 ZY13 B2632 WN1136 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2633 1 ZY14 B2633 WN1137 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2634 1 ZY15 B2634 WN1138 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2635 1 ZY16 B2635 WN1139 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2636 1 ZY17 B2636 WN1140 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2637 1 ZY18 B2637 WN1141 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2638 1 ZY19 B2638 WN1142 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2639 1 ZY20 B2639 WN1143 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2640 1 ZY21 B2640 WN1144 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2641 1 ZY22 B2641 WN1145 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2642 1 ZY23 B2642 WN1146 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2643 1 ZY24 B2643 WN1147 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2644 1 ZY25 B2644 WN1148 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2645 1 ZY26 B2645 WN1149 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2646 1 ZY27 B2646 WN1150 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2647 1 ZY28 B2647 WN1151 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2648 1 ZY29 B2648 WN1152 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2649 1 ZY30 B2649 WN1153 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2650 1 ZY31 B2650 WN1154 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2651 1 ZY33 B2651 WN1155 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2653 1 ZY35 B2653 WN1157 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2654 1 ZY36 B2654 WN1158 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2655 1 ZY37 B2655 WN1159 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2656 1 ZY38 B2656 WN1160 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2657 1 ZY39 B2657 WN1161 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2658 1 ZY40 B2658 WN1162 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2659 1 ZY41 B2659 WN1163 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2660 1 ZY42 B2660 WN1164 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2661 1 ZY43 B2661 WN1165 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2662 1 ZY44 B2662 WN1166 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2663 1 ZY45 B2663 WN1167 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2664 1 ZY46 B2664 WN1168 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2665 1 ZY51 B2665 WN1169 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2666 1 ZY52 B2666 WN1170 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2667 1 ZY53 B2667 WN1171 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2668 1 ZY54 B2668 WN1172 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2669 1 ZY55 B2669 WN1173 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2670 1 ZY56 B2670 WN1174 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2671 1 ZY58 B2671 WN1175 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2672 1 ZY59 B2672 WN1176 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2673 1 ZY60 B2673 WN1177 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2674 1 ZY61 B2674 WN1178 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2675 1 ZY62 B2675 WN1179 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2676 1 ZY63 B2676 WN1180 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2677 1 ZY64 B2677 WN1181 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2678 1 ZY65 B2678 WN1182 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2679 1 ZY66 B2679 WN1183 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2680 1 ZY67 B2680 WN1184 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2681 1 ZY68 B2681 WN1185 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2682 1 ZY69 B2682 WN1186 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2683 1 ZY70 B2683 WN1187 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2684 1 ZY71 B2684 WN1188 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2685 1 ZY72 B2685 WN1189 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2686 1 ZY75 B2686 WN1190 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2687 1 ZY76 B2687 WN1191 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2688 1 ZY77 B2688 WN1192 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2689 1 ZY78 B2689 WN1193 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2690 1 ZY79 B2690 WN1194 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2691 1 ZY80 B2691 WN1195 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2692 1 ZY81 B2692 WN1196 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2693 1 ZY82 B2693 WN1197 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2694 1 ZY83 B2694 WN1198 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2695 1 ZY91 B2695 WN1199 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2696 1 B2696 JU1511 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2697 1 B2697 JU1926 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2698 1 B2698 JU1931 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
B2699 1 B2699 JU1941 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite
D0136 1 ZY2 D0136 WN1126 Prof. Dr. Jan Kammenga; Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, NL-6708 PB Wageningen, The Netherlands Model organism or animal sample from Caenorhabditis elegans L4 cultured at 20 °C on OP50 whole organism hermaphrodite

SRP166194: Maternal and zygotic gene regulatory effects of endogenous RNAi pathways in C. elegans

The Institute of Molecular Biology (IMB)

Design: 54 conditions

Condition num. replicates Developmental stage Generation Genotype Sample name Sex Strain Description title Organism part
Mutant F1 rep1 1 Young Adult F3 dpy-4(e1166);gtsf-1(xf43) IV Mutant F1 rep1 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F1 rep2 1 Young Adult F3 dpy-4(e1166);gtsf-1(xf43) IV Mutant F1 rep2 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F1 rep3 1 Young Adult F3 dpy-4(e1166);gtsf-1(xf43) IV Mutant F1 rep3 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F1 rep4 1 Young Adult F3 dpy-4(e1166);gtsf-1(xf43) IV Mutant F1 rep4 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F2 rep1 1 Young Adult F4 dpy-4(e1166);gtsf-1(xf43) IV Mutant F2 rep1 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F2 rep2 1 Young Adult F4 dpy-4(e1166);gtsf-1(xf43) IV Mutant F2 rep2 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F2 rep3 1 Young Adult F4 dpy-4(e1166);gtsf-1(xf43) IV Mutant F2 rep3 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Mutant F2 rep4 1 Young Adult F4 dpy-4(e1166);gtsf-1(xf43) IV Mutant F2 rep4 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L1 rep1 1 L1 N2 wild-type N2 L1 rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L1 rep2 1 L1 N2 wild-type N2 L1 rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L1 rep3 1 L1 N2 wild-type N2 L1 rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L2 rep1 1 L2 N2 wild-type N2 L2 rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L2 rep2 1 L2 N2 wild-type N2 L2 rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L2 rep3 1 L2 N2 wild-type N2 L2 rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L3 rep1 1 L3 N2 wild-type N2 L3 rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L3 rep2 1 L3 N2 wild-type N2 L3 rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L3 rep3 1 L3 N2 wild-type N2 L3 rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L4 rep1 1 L4 N2 wild-type N2 L4 rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L4 rep2 1 L4 N2 wild-type N2 L4 rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 L4 rep3 1 L4 N2 wild-type N2 L4 rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 YA rep1 1 Young Adult N2 wild-type N2 YA rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 YA rep2 1 Young Adult N2 wild-type N2 YA rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 YA rep3 1 Young Adult N2 wild-type N2 YA rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 embryo rep1 1 Embryo N2 wild-type N2 embryo rep1 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 embryo rep2 1 Embryo N2 wild-type N2 embryo rep2 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
N2 embryo rep3 1 Embryo N2 wild-type N2 embryo rep3 hermaphrodite N2 Model organism or animal sample from Caenorhabditis elegans whole organism
Wild-type rep1 1 Young Adult F3 dpy-4(e1166)/+;gtsf-1(xf43)/+ or +/+; +/+ Wild-type rep1 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Wild-type rep2 1 Young Adult F3 dpy-4(e1166)/+;gtsf-1(xf43)/+ or +/+; +/+ Wild-type rep2 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Wild-type rep3 1 Young Adult F3 dpy-4(e1166)/+;gtsf-1(xf43)/+ or +/+; +/+ Wild-type rep3 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
Wild-type rep4 1 Young Adult F3 dpy-4(e1166)/+;gtsf-1(xf43)/+ or +/+; +/+ Wild-type rep4 hermaphrodite Derived from cross of N2 with RKF457. Model organism or animal sample from Caenorhabditis elegans whole organism
him-5 rep1 1 adult him-5(e1467) him-5 rep1 male CB1467 Model organism or animal sample from Caenorhabditis elegans whole organism
him-5 rep2 1 adult him-5(e1467) him-5 rep2 male CB1467 Model organism or animal sample from Caenorhabditis elegans whole organism
him-5 rep3 1 adult him-5(e1467) him-5 rep3 male CB1467 Model organism or animal sample from Caenorhabditis elegans whole organism
him-5;gtsf-1 rep1 1 adult him-5(e1467); gtsf-1(xf43) him-5;gtsf-1 rep1 male RFK499 Model organism or animal sample from Caenorhabditis elegans whole organism
him-5;gtsf-1 rep2 1 adult him-5(e1467); gtsf-1(xf43) him-5;gtsf-1 rep2 male RFK499 Model organism or animal sample from Caenorhabditis elegans whole organism
him-5;gtsf-1 rep3 1 adult him-5(e1467); gtsf-1(xf43) him-5;gtsf-1 rep3 male RFK499 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L1 rep1 1 L1 rrf-3(pk1426) rrf3 L1 rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L1 rep2 1 L1 rrf-3(pk1426) rrf3 L1 rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L1 rep3 1 L1 rrf-3(pk1426) rrf3 L1 rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L2 rep1 1 L2 rrf-3(pk1426) rrf3 L2 rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L2 rep2 1 L2 rrf-3(pk1426) rrf3 L2 rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L2 rep3 1 L2 rrf-3(pk1426) rrf3 L2 rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L3 rep1 1 L3 rrf-3(pk1426) rrf3 L3 rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L3 rep2 1 L3 rrf-3(pk1426) rrf3 L3 rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L3 rep3 1 L3 rrf-3(pk1426) rrf3 L3 rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L4 rep1 1 L4 rrf-3(pk1426) rrf3 L4 rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L4 rep2 1 L4 rrf-3(pk1426) rrf3 L4 rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 L4 rep3 1 L4 rrf-3(pk1426) rrf3 L4 rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 YA rep1 1 Young Adult rrf-3(pk1426) rrf3 YA rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 YA rep2 1 Young Adult rrf-3(pk1426) rrf3 YA rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 YA rep3 1 Young Adult rrf-3(pk1426) rrf3 YA rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 embryo rep1 1 Embryo rrf-3(pk1426) rrf3 embryo rep1 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 embryo rep2 1 Embryo rrf-3(pk1426) rrf3 embryo rep2 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism
rrf3 embryo rep3 1 Embryo rrf-3(pk1426) rrf3 embryo rep3 hermaphrodite RFK18 Model organism or animal sample from Caenorhabditis elegans whole organism

SRP168250: An unstructured MET-2/SETDB1 cofactor ensures H3K9me2, focus formation and perinuclear anchoring [RNA-seq]

Friedrich Miescher Institute

Heterochromatic foci and transcriptional repression by an unstructured MET-2/SETDB1 co-factor LIN-65. (Delaney .. Padeken, 2019)

Design: 12 conditions

Condition num. replicates Description title Strain Source name
SRR8176673 1 RNA_N2_eemb_20oC_rep1 N2 (Bristol) early embryo
SRR8176674 1 RNA_N2_eemb_20oC_rep2 N2 (Bristol) early embryo
SRR8176675 1 RNA_N2_eemb_20oC_rep3 N2 (Bristol) early embryo
SRR8176676 1 RNA_met-2_eemb_20oC_rep1 met-2(n4256) III early embryo
SRR8176677 1 RNA_met-2_eemb_20oC_rep2 met-2(n4256) III early embryo
SRR8176678 1 RNA_met-2_eemb_20oC_rep3 met-2(n4256) III early embryo
SRR8176679 1 RNA_lin-65_eemb_20oC_rep1 lin-65(delta) I early embryo
SRR8176680 1 RNA_lin-65_eemb_20oC_rep2 lin-65(delta) I early embryo
SRR8176681 1 RNA_lin-65_eemb_20oC_rep3 lin-65(delta) I early embryo
SRR8176682 1 RNA_lin-65_met-2_eemb_20oC_rep1 lin-65(delta) I, met-2(n4256) III early embryo
SRR8176683 1 RNA_lin-65_met-2_eemb_20oC_rep2 lin-65(delta) I, met-2(n4256) III early embryo
SRR8176684 1 RNA_lin-65_met-2_eemb_20oC_rep3 lin-65(delta) I, met-2(n4256) III early embryo

SRP169111: Binding of an X-specific condensin correlates with a reduction in active histone modifications at gene regulatory elements

Sevinc Ercan, Biology, New York University

Design: 12 conditions

Condition num. replicates Description title Strain Developmental stage Source name
SRR8201471 1 X;II L1-L3 rep1 RNA-seq YPT41 L1-L3 whole worms
SRR8201472 1 X;II L1-L3 rep2 RNA-seq YPT41 L1-L3 whole worms
SRR8201473 1 X;II L1-L3 rep3 RNA-seq YPT41 L1-L3 whole worms
SRR8201474 1 X;II L1-L3 rep4 RNA-seq YPT41 L1-L3 whole worms
SRR8201475 1 X;V L1-L3 rep1 RNA-seq 15eh1 L1-L3 whole worms
SRR8201476 1 X;V L1-L3 rep2 RNA-seq 15eh1 L1-L3 whole worms
SRR8201477 1 X;V L1-L3 rep3 RNA-seq 15eh1 L1-L3 whole worms
SRR8201478 1 X;V L1-L3 rep4 RNA-seq 15eh1 L1-L3 whole worms
SRR8201479 1 N2 L1-L3 rep1 RNA-seq N2 L1-L3 whole worms
SRR8201480 1 N2 L1-L3 rep2 RNA-seq N2 L1-L3 whole worms
SRR8201481 1 N2 L1-L3 rep3 RNA-seq N2 L1-L3 whole worms
SRR8201482 1 N2 L1-L3 rep4 RNA-seq N2 L1-L3 whole worms

SRP169815: RNASeq of C. elegans exposed to silver (Ag) or silicon dioxide (SiO2) nanoparticles

McGill University

Design: 15 conditions

Condition num. replicates Description title Developmental stage Organism part Source name Strain
SRR8208602 1 Sample 1_Control adult day 1 stage whole organism Whole tissue N2
SRR8208603 1 Sample 2_Control adult day 1 stage whole organism Whole tissue N2
SRR8208604 1 Sample 3_Control adult day 1 stage whole organism Whole tissue N2
SRR8208605 1 Sample 4_Control adult day 1 stage whole organism Whole tissue N2
SRR8208606 1 Sample 5_Control adult day 1 stage whole organism Whole tissue N2
SRR8208607 1 Sample 6_Incubation with Ag adult day 1 stage whole organism Whole tissue N2
SRR8208608 1 Sample 7_Incubation with Ag adult day 1 stage whole organism Whole tissue N2
SRR8208609 1 Sample 8_Incubation with Ag adult day 1 stage whole organism Whole tissue N2
SRR8208610 1 Sample 9_Incubation with Ag adult day 1 stage whole organism Whole tissue N2
SRR8208611 1 Sample 10_Incubation with Ag adult day 1 stage whole organism Whole tissue N2
SRR8208612 1 Sample 11_Incubation with SiO2 adult day 1 stage whole organism Whole tissue N2
SRR8208613 1 Sample 12_Incubation with SiO2 adult day 1 stage whole organism Whole tissue N2
SRR8208614 1 Sample 13_Incubation with SiO2 adult day 1 stage whole organism Whole tissue N2
SRR8208615 1 Sample 14_Incubation with SiO2 adult day 1 stage whole organism Whole tissue N2
SRR8208616 1 Sample 15_Incubation with SiO2 adult day 1 stage whole organism Whole tissue N2

SRP169961: Transcriptome analysis of a multipotent progenitor and its differentiated sister in C. elegans

Virginia Commonwealth University

Design: 9 conditions

Condition num. replicates Description title Facs sort Organism part Sample name Developmental stage Sex Strain
SGP1 1 L1 hermaphrodite SGP, replicate 1 1 sgp SGP1 L1 hermaphrodite RA587
SGP2 1 L1 hermaphrodite SGP, replicate 2 2 sgp SGP2 L1 hermaphrodite RA587
SGP3 1 L1 hermaphrodite SGP, replicate 3 3 sgp SGP3 L1 hermaphrodite RA587
SGP4 1 L1 hermaphrodite SGP, replicate 4 4 sgp SGP4 L1 hermaphrodite RA587
SGP5 1 L1 hermaphrodite SGP, replicate 5 5 sgp SGP5 L1 hermaphrodite RA587
hmc1 1 L1 hermaphrodite hmc, replicate 1 1 hmc hmc1 L1 hermaphrodite RA587
hmc2 1 L1 hermaphrodite hmc, replicate 2 2 hmc hmc2 L1 hermaphrodite RA587
hmc3 1 L1 hermaphrodite hmc, replicate 3 3 hmc hmc3 L1 hermaphrodite RA587
hmc4 1 L1 hermaphrodite hmc, replicate 4 4 hmc hmc4 L1 hermaphrodite RA587

SRP170618: DAF-16 stabilizes the aging transcriptome and is activated in mid-aged C. elegans to cope with internal stress

National Institute of Biological Sciences

DAF-16 stabilizes the aging transcriptome and is activated in mid-aged Caenorhabditis elegans to cope with internal stress. (Li .. Dong, 2019)

Design: 42 conditions

Condition num. replicates Description title Developmental stage Source name
SRR8240860 1 fer-15 Day1 rep1 adult day 1 whole worm
SRR8240861 1 fer-15 Day1 rep2 adult day 1 whole worm
SRR8240862 1 fer-15 Day1 rep3 adult day 1 whole worm
SRR8240863 1 fer-15 Day2 rep1 adult day 2 whole worm
SRR8240864 1 fer-15 Day2 rep2 adult day 2 whole worm
SRR8240865 1 fer-15 Day2 rep3 adult day 2 whole worm
SRR8240866 1 fer-15 Day3 rep1 adult day 3 whole worm
SRR8240867 1 fer-15 Day3 rep2 adult day 3 whole worm
SRR8240868 1 fer-15 Day3 rep3 adult day 3 whole worm
SRR8240869 1 fer-15 Day4 rep1 adult day 4 whole worm
SRR8240870 1 fer-15 Day4 rep2 adult day 4 whole worm
SRR8240871 1 fer-15 Day4 rep3 adult day 4 whole worm
SRR8240872 1 fer-15 Day5 rep1 adult day 5 whole worm
SRR8240873 1 fer-15 Day5 rep2 adult day 5 whole worm
SRR8240874 1 fer-15 Day5 rep3 adult day 5 whole worm
SRR8240875 1 fer-15 Day6 rep1 adult day 6 whole worm
SRR8240876 1 fer-15 Day6 rep2 adult day 6 whole worm
SRR8240877 1 fer-15 Day6 rep3 adult day 6 whole worm
SRR8240878 1 fer-15 Day7 rep1 adult day 7 whole worm
SRR8240879 1 fer-15 Day7 rep2 adult day 7 whole worm
SRR8240880 1 fer-15 Day7 rep3 adult day 7 whole worm
SRR8240881 1 daf-16;fer-15 Day1 rep1 adult day 1 whole worm
SRR8240882 1 daf-16;fer-15 Day1 rep2 adult day 1 whole worm
SRR8240883 1 daf-16;fer-15 Day1 rep3 adult day 1 whole worm
SRR8240884 1 daf-16;fer-15 Day2 rep1 adult day 2 whole worm
SRR8240885 1 daf-16;fer-15 Day2 rep2 adult day 2 whole worm
SRR8240886 1 daf-16;fer-15 Day2 rep3 adult day 2 whole worm
SRR8240887 1 daf-16;fer-15 Day3 rep1 adult day 3 whole worm
SRR8240888 1 daf-16;fer-15 Day3 rep2 adult day 3 whole worm
SRR8240889 1 daf-16;fer-15 Day3 rep3 adult day 3 whole worm
SRR8240890 1 daf-16;fer-15 Day4 rep1 adult day 4 whole worm
SRR8240891 1 daf-16;fer-15 Day4 rep2 adult day 4 whole worm
SRR8240892 1 daf-16;fer-15 Day4 rep3 adult day 4 whole worm
SRR8240893 1 daf-16;fer-15 Day5 rep1 adult day 5 whole worm
SRR8240894 1 daf-16;fer-15 Day5 rep2 adult day 5 whole worm
SRR8240895 1 daf-16;fer-15 Day5 rep3 adult day 5 whole worm
SRR8240896 1 daf-16;fer-15 Day6 rep1 adult day 6 whole worm
SRR8240897 1 daf-16;fer-15 Day6 rep2 adult day 6 whole worm
SRR8240898 1 daf-16;fer-15 Day6 rep3 adult day 6 whole worm
SRR8240899 1 daf-16;fer-15 Day7 rep1 adult day 7 whole worm
SRR8240900 1 daf-16;fer-15 Day7 rep2 adult day 7 whole worm
SRR8240901 1 daf-16;fer-15 Day7 rep3 adult day 7 whole worm

SRP170634: Transcriptome of a long-lived mutant nematode with severe mitochondrial deficiency

DZNE

Multi-omics identify xanthine as a pro-survival metabolite for nematodes with mitochondrial dysfunction. (Gioran .. Bano, 2019)

Design: 15 conditions

Condition num. replicates Description title Developmental stage Source name
SRR8241130 1 WT 1 L4 whole body
SRR8241131 1 WT 2 L4 whole body
SRR8241132 1 WT 3 L4 whole body
SRR8241133 1 WT 4 L4 whole body
SRR8241134 1 WT 5 L4 whole body
SRR8241135 1 gas-1(fc21) 1 L4 whole body
SRR8241136 1 gas-1(fc21) 2 L4 whole body
SRR8241137 1 gas-1(fc21) 3 L4 whole body
SRR8241138 1 gas-1(fc21) 4 L4 whole body
SRR8241139 1 gas-1(fc21) 5 L4 whole body
SRR8241140 1 age-1(hx546); gas-1(fc21) 1 L4 whole body
SRR8241141 1 age-1(hx546); gas-1(fc21) 2 L4 whole body
SRR8241142 1 age-1(hx546); gas-1(fc21) 3 L4 whole body
SRR8241143 1 age-1(hx546); gas-1(fc21) 4 L4 whole body
SRR8241144 1 age-1(hx546); gas-1(fc21) 5 L4 whole body

SRP170937: High-throughput transcriptome sequencing reveals extremely high doses of ionizing radiation-response genes in Caenorhabditis elegans

Southern Medical University

Design: 6 conditions

Condition num. replicates Description title Ir treatment
SRR8247842 1 0-1 0Gy
SRR8247843 1 0-2 0Gy
SRR8247844 1 200-1 200Gy
SRR8247845 1 200-2 200Gy
SRR8247846 1 400-1 400Gy
SRR8247847 1 400-2 400Gy

SRP171041: Transcriptome analysis of extruded germline from wild-type C. elegans at different temperatures and under inhbition of germ stem cell proliferation

Vilchez Lab, CECAD - Cluster of Excellence

Design: 9 conditions

Condition num. replicates Description title Genotype Growth temperature Source name Organism part
SRR8257107 1 87928_C15_1 empty vector control 15 degrees Celsius Empty vector (EV) RNAi-treated worms at 15 C germ line
SRR8257108 1 87930_C15_2 empty vector control 15 degrees Celsius Empty vector (EV) RNAi-treated worms at 15 C germ line
SRR8257109 1 87932_C15_3 empty vector control 15 degrees Celsius Empty vector (EV) RNAi-treated worms at 15 C germ line
SRR8257110 1 87934_C20_1 empty vector control 20 degrees Celsius Empty vector (EV) RNAi-treated worms at 20 C germ line
SRR8257111 1 87936_C20_2 empty vector control 20 degrees Celsius Empty vector (EV) RNAi-treated worms at 20 C germ line
SRR8257112 1 87938_C20_3 empty vector control 20 degrees Celsius Empty vector (EV) RNAi-treated worms at 20 C germ line
SRR8257113 1 87940_I15_1 iff-1 RNAi 15 degrees Celsius iff-1 RNAi-treated worms at 15 C germ line
SRR8257114 1 87942_I15_2 iff-1 RNAi 15 degrees Celsius iff-1 RNAi-treated worms at 15 C germ line
SRR8257115 1 87944_I15_3 iff-1 RNAi 15 degrees Celsius iff-1 RNAi-treated worms at 15 C germ line

SRP171641: Bacterial diet and weak cadmium stress affect the age-specific survival rates of Caenorhabditis elegans and its resistance against severe stressors

Prof. Paul, Institute of Zoophysiology, University of Muenster

Bacterial diet and weak cadmium stress affect the survivability of Caenorhabditis elegans and its resistance to severe stress. (Dölling .. Paul, 2019)

Design: 5 conditions

Condition num. replicates Treatment Developmental stage Strain
0.1 µM CdCl2 3 0.1 µM CdCl2 synchronized adult worms N2 Bristol
10 µM CdCl2 3 10 µM CdCl2 synchronized adult worms N2 Bristol
E. coli strain HT115 (HT115_1) as feed 2 E. coli strain HT115 (HT115_1) as feed synchronized adult worms N2 Bristol
E. coli strain HT115 (HT115_2) as feed 3 E. coli strain HT115 (HT115_2) as feed synchronized adult worms N2 Bristol
E. coli strain OP50 as feed 3 E. coli strain OP50 as feed synchronized adult worms N2 Bristol

SRP172706: RNA-seq transcriptome profiling of hybrid (hawaii mother and bristol father) C. elegans H3K27me3 M+P+ vs. M+P- hermaphrodite germlines

MCD Biology, UC Santa Cruz

Sperm-inherited H3K27me3 impacts offspring transcription and development in C. elegans. (Kaneshiro .. Strome, 2019)

Design: 11 conditions

Condition num. replicates Description title Genotype Source name Organism part Strain
SRR8285099 1 hybrid hermaphrodite germlines from K27me3 M+P-, rep1 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P- distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285100 1 hybrid hermaphrodite germlines from K27me3 M+P-, rep2 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P- distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285101 1 hybrid hermaphrodite germlines from K27me3 M+P-, rep3 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P- distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285102 1 hybrid hermaphrodite germlines from K27me3 M+P-, rep4 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P- distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285104 1 hybrid hermaphrodite germlines from K27me3 M+P+, rep2 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P+ distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285105 1 hybrid hermaphrodite germlines from K27me3 M+P+, rep3 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P+ distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285106 1 hybrid hermaphrodite germlines from K27me3 M+P+, rep4 mes-3/+; fem-2/+ hybrid hermaphrodite germlines from K27me3 M+P+ distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285107 1 wildtype hybrid hermaphrodite germlines, rep1 fem-2/+ wildtype hybrid hermaphrodite germlines distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285108 1 wildtype hybrid hermaphrodite germlines, rep2 fem-2/+ wildtype hybrid hermaphrodite germlines distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285109 1 wildtype hybrid hermaphrodite germlines, rep3 fem-2/+ wildtype hybrid hermaphrodite germlines distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)
SRR8285110 1 wildtype hybrid hermaphrodite germlines, rep4 fem-2/+ wildtype hybrid hermaphrodite germlines distal gonad arms cut at the late-pachytene gonad bend hybrid (hawaii mother and bristol father)

SRP173196: A Persistence Detector for Metabolic Network Rewiring in an Animal

Walhout, Program in Systems Biology, Univesity of Massachusetts Medical School

A Persistence Detector for Metabolic Network Rewiring in an Animal. (Bulcha .. Walhout, 2019)

Design: 18 conditions

Condition num. replicates Allele Compound Description title Genotype Strain Developmental stage Source name
SRR8308157 1 wild type N2_OP50_rep1 wild type N2 L4 whole animal
SRR8308158 1 wild type N2_OP50_rep2 wild type N2 L4 whole animal
SRR8308159 1 wild type 20 nM vitamin B12 N2_B12_rep1 wild type N2 L4 whole animal
SRR8308160 1 wild type 20 nM vitamin B12 N2_B12_rep2 wild type N2 L4 whole animal
SRR8308161 1 wild type 20 nM vitamin B12 and 40 mM propionate N2_B12-PA_rep1 wild type N2 L4 whole animal
SRR8308162 1 wild type 20 nM vitamin B12 and 40 mM propionate N2_B12-PA_rep2 wild type N2 L4 whole animal
SRR8308163 1 tm4695 nhr10_OP50_rep1 nhr-10 deletion L4 whole animal
SRR8308164 1 tm4695 nhr10_OP50_rep2 nhr-10 deletion L4 whole animal
SRR8308165 1 tm4695 20 nM vitamin B12 nhr10_B12_rep1 nhr-10 deletion L4 whole animal
SRR8308166 1 tm4695 20 nM vitamin B12 nhr10_B12_rep2 nhr-10 deletion L4 whole animal
SRR8308167 1 tm4695 20 nM vitamin B12 and 40 mM propionate nhr10_B12-PA_rep1 nhr-10 deletion L4 whole animal
SRR8308168 1 tm4695 20 nM vitamin B12 and 40 mM propionate nhr10_B12-PA_rep2 nhr-10 deletion L4 whole animal
SRR8308169 1 gk708 nhr68_OP50_rep1 nhr-68 deletion VC1527 L4 whole animal
SRR8308170 1 gk708 nhr68_OP50_rep2 nhr-68 deletion VC1527 L4 whole animal
SRR8308171 1 gk708 20 nM vitamin B12 nhr68_B12_rep1 nhr-68 deletion VC1527 L4 whole animal
SRR8308172 1 gk708 20 nM vitamin B12 nhr68_B12_rep2 nhr-68 deletion VC1527 L4 whole animal
SRR8308173 1 gk708 20 nM vitamin B12 and 40 mM propionate nhr68_B12-PA_rep1 nhr-68 deletion VC1527 L4 whole animal
SRR8308174 1 gk708 20 nM vitamin B12 and 40 mM propionate nhr68_B12-PA_rep2 nhr-68 deletion VC1527 L4 whole animal

SRP173463: Loss of miR-83 extends lifespan and affects target gene expression in an age-dependent manner in Caenorhabditis elegans

School of Life Sciences, University of Science and Technology of China

Loss of miR-83 extends lifespan and affects target gene expression in an age-dependent manner in Caenorhabditis elegans. (Dzakah .. Shan, 2018)

Design: 8 conditions

Condition num. replicates Description title Developmental stage Genotype Source name Strain Organism part
SRR8318591 1 N2 day 4_replicate 1_RNASeq adult day 4 wild type N2 day 4 N2 whole organism
SRR8318592 1 N2 day 4_replicate 2_RNASeq adult day 4 wild type N2 day 4 N2 whole organism
SRR8318593 1 N2 day 12_replicate 1_RNASeq adult day 12 wild type N2 day 12 N2 whole organism
SRR8318594 1 N2 day 12_replicate 2_RNASeq adult day 12 wild type N2 day 12 N2 whole organism
SRR8318595 1 mir-83 day 4_replicate 1_RNASeq adult day 4 mir-83 mutant mir-83 day 4 MT15501 whole organism
SRR8318596 1 mir-83 day 4_replicate 2_RNASeq adult day 4 mir-83 mutant mir-83 day 4 MT15501 whole organism
SRR8318597 1 mir-83 day 12_replicate 1_RNASeq adult day 12 mir-83 mutant mir-83 day 12 MT15501 whole organism
SRR8318598 1 mir-83 day 12_replicate 2_RNASeq adult day 12 mir-83 mutant mir-83 day 12 MT15501 whole organism

SRP173638: Comprehensive Transcriptome Analysis of Cerebral Cavernous Malformation Across Multiple Species and Genotypes

Center for Research Informatics, The University of Chicago

Comprehensive transcriptome analysis of cerebral cavernous malformation across multiple species and genotypes. (Koskimäki .. Awad, 2019)

Design: 12 conditions

Condition num. replicates Description title Genotype Cell type Developmental stage Source name
SRR8330411 1 ce_krit1_rep1 Kri-1 null (ccm1/kri-1(ok1251) knock out) entire organism 24 hours past the L4 state entire organism
SRR8330412 1 ce_krit1_rep2 Kri-1 null (ccm1/kri-1(ok1251) knock out) entire organism 24 hours past the L4 state entire organism
SRR8330413 1 ce_krit1_rep3 Kri-1 null (ccm1/kri-1(ok1251) knock out) entire organism 24 hours past the L4 state entire organism
SRR8330414 1 ce_krit1_control_rep1 Kri-1 wild type control (N2) entire organism 24 hours past the L4 state entire organism
SRR8330415 1 ce_krit1_control_rep2 Kri-1 wild type control (N2) entire organism 24 hours past the L4 state entire organism
SRR8330416 1 ce_krit1_control_rep3 Kri-1 wild type control (N2) entire organism 24 hours past the L4 state entire organism
SRR8330417 1 ce_ccm3_rep1 Pdcd10 null (ccm3/pdcd10(tm2806) knock-out ) entire organism 24 hours past the L4 state entire organism
SRR8330418 1 ce_ccm3_rep2 Pdcd10 null (ccm3/pdcd10(tm2806) knock-out ) entire organism 24 hours past the L4 state entire organism
SRR8330419 1 ce_ccm3_rep3 Pdcd10 null (ccm3/pdcd10(tm2806) knock-out ) entire organism 24 hours past the L4 state entire organism
SRR8330420 1 ce_ccm3_control_rep1 Pdcd10 wild type control (N2) entire organism 24 hours past the L4 state entire organism
SRR8330421 1 ce_ccm3_control_rep2 Pdcd10 wild type control (N2) entire organism 24 hours past the L4 state entire organism
SRR8330422 1 ce_ccm3_control_rep3 Pdcd10 wild type control (N2) entire organism 24 hours past the L4 state entire organism

SRP173805: Neuronal Small RNAs Control Behavior Transgenerationally

Oded Rechavi lab, Neurobiology, Tel Aviv University

Neuronal Small RNAs Control Behavior Transgenerationally. (Posner .. Rechavi, 2019)

Design: 27 conditions

Condition num. replicates Description title Genotype Organism part Source name Strain Generation Temperature
SRR8349530 1 mRNA_rde-4_Gonads_R1 rde-4(ne299) gonads rde-4(ne299) BFF 12 20
SRR8349531 1 mRNA_rde-4_Gonads_R2 rde-4(ne299) gonads rde-4(ne299) BFF 12 20
SRR8349532 1 mRNA_rde-4_Gonads_R3 rde-4(ne299) gonads rde-4(ne299) BFF 12 20
SRR8349533 1 mRNA_Psng-1_rde-4_SC_Gonads_R1 rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] gonads rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] BFF 16 20
SRR8349534 1 mRNA_Psng-1_rde-4_SC_Gonads_R2 rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] gonads rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] BFF 16 20
SRR8349535 1 mRNA_Psng-1_rde-4_SC_Gonads_R3 rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] gonads rde-4(ne299);pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp] BFF 16 20
SRR8349536 1 F3_mRNA_Psng-1_rde-4_SC_Gonads_R1 rde-4 (-) gonads rde-4 (-) BFF 12 F3 of heterozygote BFF16 20
SRR8349537 1 F3_mRNA_Psng-1_rde-4_SC_Gonads_R2 rde-4 (-) gonads rde-4 (-) BFF 12 F3 of heterozygote BFF16 20
SRR8349538 1 F3_mRNA_Psng-1_rde-4_SC_Gonads_R3 rde-4 (-) gonads rde-4 (-) BFF 12 F3 of heterozygote BFF16 20
SRR8349539 1 mRNA_sid-1_rde-4_Gonads_R1 sid-1(qt-9) ; rde-4 (ne299) gonads sid-1(qt-9) ; rde-4 (ne299) BFF 13 20
SRR8349540 1 mRNA_sid-1_rde-4_Gonads_R2 sid-1(qt-9) ; rde-4 (ne299) gonads sid-1(qt-9) ; rde-4 (ne299) BFF 13 20
SRR8349541 1 mRNA_sid-1_rde-4_Gonads_R3 sid-1(qt-9) ; rde-4 (ne299) gonads sid-1(qt-9) ; rde-4 (ne299) BFF 13 20
SRR8349542 1 mRNA_Psng-1_rde-4_sid-1_Gonads_R1 sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) gonads sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) BFF 33 20
SRR8349543 1 mRNA_Psng-1_rde-4_sid-1_Gonads_R2 sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) gonads sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) BFF 33 20
SRR8349544 1 mRNA_Psng-1_rde-4_sid-1_Gonads_R3 sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) gonads sid-1(qt-9) ; rde-4 (ne299); Psng-1::rde-4 (Pan-neuronal rescue) BFF 33 20
SRR8349545 1 mRNA_WT_Neurons_R1 otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 30 (outcrossed OH10690) 20
SRR8349546 1 mRNA_WT_Neurons_R2 otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 30 (outcrossed OH10690) 20
SRR8349547 1 mRNA_WT_Neurons_R3 otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 30 (outcrossed OH10690) 20
SRR8349548 1 mRNA_WT_Neurons_R4 otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 30 (outcrossed OH10690) 20
SRR8349549 1 mRNA_rde-4_Neurons_R1 rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 31 20
SRR8349550 1 mRNA_rde-4_Neurons_R2 rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 31 20
SRR8349551 1 mRNA_rde-4_Neurons_R3 rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 31 20
SRR8349552 1 mRNA_rde-4_Neurons_R4 rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] neurons rde-4(ne299); otIs356[rab-3p(prom1)::2xNLS::TagRFP] BFF 31 20
SRR8349553 1 mRNA_Psng-1_rde-4_SC_Neurons_R1 rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. neurons rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. BFF 32 20
SRR8349554 1 mRNA_Psng-1_rde-4_SC_Neurons_R2 rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. neurons rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. BFF 32 20
SRR8349555 1 mRNA_Psng-1_rde-4_SC_Neurons_R3 rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. neurons rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. BFF 32 20
SRR8349556 1 mRNA_Psng-1_rde-4_SC_Neurons_R4 rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. neurons rde-4(ne299); pigSi3[cb-unc-119(+)Psng-1::rde-4:SL2:yfp]; otIs356[rab-3p(prom1)::2xNLS::TagRFP]. BFF 32 20

SRP174025: RNA-seq: WT under proteotoxic stress conditions

Hoppe Lab, Institut für Genetik, CECAD Cologne and Institute for Genetics

Design: 21 conditions

Condition num. replicates Description title Treatment Organism part Source name Strain
SRR8359132 1 Control4 non (control) whole organism whole organism wildtype (N2)
SRR8359133 1 Control6 non (control) whole organism whole organism wildtype (N2)
SRR8359134 1 Starv15h1 15h starvation whole organism whole organism wildtype (N2)
SRR8359135 1 Starv15h2 15h starvation whole organism whole organism wildtype (N2)
SRR8359136 1 Starv15h3 15h starvation whole organism whole organism wildtype (N2)
SRR8359137 1 Flu9 fluphenazine whole organism whole organism wildtype (N2)
SRR8359138 1 Flu2 fluphenazine whole organism whole organism wildtype (N2)
SRR8359139 1 Flu4 fluphenazine whole organism whole organism wildtype (N2)
SRR8359140 1 Canta1 cantharidin whole organism whole organism wildtype (N2)
SRR8359141 1 Canta9 cantharidin whole organism whole organism wildtype (N2)
SRR8359142 1 Control7 non (control) whole organism whole organism wildtype (N2)
SRR8359143 1 Canta3 cantharidin whole organism whole organism wildtype (N2)
SRR8359144 1 Rpn6RNAi4 rpn-6 RNAi whole organism whole organism wildtype (N2)
SRR8359145 1 Rpn6RNAi5 rpn-6 RNAi whole organism whole organism wildtype (N2)
SRR8359146 1 Rpn6RNAi6 rpn-6 RNAi whole organism whole organism wildtype (N2)
SRR8359147 1 Btz325 bortezomib 25uM whole organism whole organism wildtype (N2)
SRR8359148 1 Btz425 bortezomib 25uM whole organism whole organism wildtype (N2)
SRR8359149 1 Btz625 bortezomib 25uM whole organism whole organism wildtype (N2)
SRR8359150 1 Btz710 bortezomib 10uM whole organism whole organism wildtype (N2)
SRR8359151 1 Btz810 bortezomib 10uM whole organism whole organism wildtype (N2)
SRR8359152 1 Btz910 bortezomib 10uM whole organism whole organism wildtype (N2)

SRP174479: Gene expression profile of N2 and HPX-2 mutant C.elegans strains when exposed to E.coli and E.faecalis

Danielle Garsin, Microbiology and Molecular Genetics, University of Texas Health Science Center at Houston

Heme peroxidase HPX-2 protects Caenorhabditis elegans from pathogens. (Liu .. Garsin, 2019)

Design: 16 conditions

Condition num. replicates Description title Exposed to Genotype Source name Developmental stage
SRR8370105 1 N2-OP50 rep1 E. coli OP50 strain wild type Wild-type Young Adult stage
SRR8370106 1 N2-OP50 rep2 E. coli OP50 strain wild type Wild-type Young Adult stage
SRR8370107 1 N2-OP50 rep3 E. coli OP50 strain wild type Wild-type Young Adult stage
SRR8370108 1 N2-OP50 rep4 E. coli OP50 strain wild type Wild-type Young Adult stage
SRR8370109 1 hpx-2-OP50 rep1 E. coli OP50 strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370110 1 hpx-2-OP50 rep2 E. coli OP50 strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370111 1 hpx-2-OP50 rep3 E. coli OP50 strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370112 1 hpx-2-OP50 rep4 E. coli OP50 strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370113 1 N2-OG1RF rep1 E.faecalis OG1RF strain wild type Wild-type Young Adult stage
SRR8370114 1 N2-OG1RF rep2 E.faecalis OG1RF strain wild type Wild-type Young Adult stage
SRR8370115 1 N2-OG1RF rep3 E.faecalis OG1RF strain wild type Wild-type Young Adult stage
SRR8370116 1 N2-OG1RF rep4 E.faecalis OG1RF strain wild type Wild-type Young Adult stage
SRR8370117 1 hpx-2-OG1RF rep1 E.faecalis OG1RF strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370118 1 hpx-2-OG1RF rep2 E.faecalis OG1RF strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370119 1 hpx-2-OG1RF rep3 E.faecalis OG1RF strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage
SRR8370120 1 hpx-2-OG1RF rep4 E.faecalis OG1RF strain hpx-2 CRISPR mutant hpx-2 CRISPR mutant Young Adult stage

SRP178555: Multi-omics and genome-scale modeling reveal a metabolic shift during C. elegans ageing

Bioinformatics, The Babraham Institute

Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging. (Hastings .. Casanueva, 2019)

Design: 45 conditions

Condition num. replicates Description title Developmental stage Genotype Organism part Source name
SRR8435655 1 117-fem-Day4-OEA073 117 hours fem-3(q20) IV whole organism whole organism
SRR8435656 1 117-fem-Day4-OEA091 117 hours fem-3(q20) IV whole organism whole organism
SRR8435657 1 117-gem-Day4-OEA090 117 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435658 1 117-gem-Day4-OEA106 117 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435659 1 137-fem-Day5-OEA074 137 hours fem-3(q20) IV whole organism whole organism
SRR8435660 1 137-fem-Day5-OEA141 137 hours fem-3(q20) IV whole organism whole organism
SRR8435661 1 137-gem-Day5-OEA094 137 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435662 1 137-gem-Day5-OEA110 137 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435663 1 257-fem-Day10-OEA143 257 hours fem-3(q20) IV whole organism whole organism
SRR8435664 1 257-fem-Day10-OEA145 257 hours fem-3(q20) IV whole organism whole organism
SRR8435665 1 257-gem-Day10-OEA142 257 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435666 1 257-gem-Day10-OEA144 257 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435667 1 41-fem-Day1-OEA093 41 hours fem-3(q20) IV whole organism whole organism
SRR8435668 1 41-fem-Day1-OEA117 41 hours fem-3(q20) IV whole organism whole organism
SRR8435669 1 41-fem-Day1-OEA136 41 hours fem-3(q20) IV whole organism whole organism
SRR8435670 1 41-gem-Day1-OEA092 41 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435671 1 41-gem-Day1-OEA116 41 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435672 1 41-gem-Day1-OEA135 41 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435673 1 49-fem-Day1-OEA066 49 hours fem-3(q20) IV whole organism whole organism
SRR8435674 1 49-fem-Day1-OEA079 49 hours fem-3(q20) IV whole organism whole organism
SRR8435675 1 49-fem-Day1-OEA098 49 hours fem-3(q20) IV whole organism whole organism
SRR8435676 1 49-gem-Day1-OEA097 49 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435677 1 49-gem-Day1-OEA107 49 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435678 1 65-fem-Day2-OEA068 65 hours fem-3(q20) IV whole organism whole organism
SRR8435679 1 65-fem-Day2-OEA101 65 hours fem-3(q20) IV whole organism whole organism
SRR8435680 1 65-gem-Day2-OEA080 65 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435681 1 65-gem-Day2-OEA100 65 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435682 1 65-gem-Day2-OEA122 65 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435683 1 73-fem-Day2-OEA070 73 hours fem-3(q20) IV whole organism whole organism
SRR8435684 1 73-fem-Day2-OEA083 73 hours fem-3(q20) IV whole organism whole organism
SRR8435685 1 73-fem-Day2-OEA105 73 hours fem-3(q20) IV whole organism whole organism
SRR8435686 1 73-gem-Day2-OEA075 73 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435687 1 73-gem-Day2-OEA082 73 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435688 1 73-gem-Day2-OEA104 73 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435689 1 89-fem-Day3-OEA072 89 hours fem-3(q20) IV whole organism whole organism
SRR8435690 1 89-fem-Day3-OEA127 89 hours fem-3(q20) IV whole organism whole organism
SRR8435691 1 89-fem-Day3-OEA129 89 hours fem-3(q20) IV whole organism whole organism
SRR8435692 1 89-gem-Day3-OEA085 89 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435693 1 89-gem-Day3-OEA113 89 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435694 1 89-gem-Day3-OEA128 89 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435695 1 97-fem-Day3-OEA088 97 hours fem-3(q20) IV whole organism whole organism
SRR8435696 1 97-fem-Day3-OEA133 97 hours fem-3(q20) IV whole organism whole organism
SRR8435697 1 97-fem-Day3-OEA140 97 hours fem-3(q20) IV whole organism whole organism
SRR8435698 1 97-gem-Day3-OEA087 97 hours gon-2(q388); gem-1(bc364) whole organism whole organism
SRR8435699 1 97-gem-Day3-OEA115 97 hours gon-2(q388); gem-1(bc364) whole organism whole organism

SRP182100: A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes

Stanford University

Design: 8 conditions

Condition num. replicates Description title Treatment Developmental stage Organism part Source name Strain
SRR8489772 1 L4440_01 treated with feeding RNAi clone expressing control vector (L4440) embryo mixed Embryo TV23837
SRR8489773 1 L4440_02 treated with feeding RNAi clone expressing control vector (L4440) embryo mixed Embryo TV23837
SRR8489774 1 L4440_03 treated with feeding RNAi clone expressing control vector (L4440) embryo mixed Embryo TV23837
SRR8489775 1 L4440_04 treated with feeding RNAi clone expressing control vector (L4440) embryo mixed Embryo TV23837
SRR8489776 1 ztf-11_01 treated with feeding RNAi clone expressing dsRNA against ztf-11 embryo mixed Embryo TV23837
SRR8489777 1 ztf-11_02 treated with feeding RNAi clone expressing dsRNA against ztf-11 embryo mixed Embryo TV23837
SRR8489778 1 ztf-11_03 treated with feeding RNAi clone expressing dsRNA against ztf-11 embryo mixed Embryo TV23837
SRR8489779 1 ztf-11_04 treated with feeding RNAi clone expressing dsRNA against ztf-11 embryo mixed Embryo TV23837

SRP184487: Steroids originating from bacterial bile acid degradation affect Caenorhabditis elegans and indicate potential risks for the fauna of manured soils

Prof. Paul, Institute of Zoophysiology, University of Muenster

Design: 4 conditions

Condition num. replicates Strain Developmental stage Organism part Treatment
N2 Bristol variety under control conditions 2 N2 Bristol synchronized adult worms whole organism
N2 Bristol variety under test conditions 2 N2 Bristol synchronized adult worms whole organism 5 µM ADD 7a-HADD
nhr-69 deletion mutant under control conditions 3 nhr-69 deletion mutant synchronized adult worms whole organism
nhr-69 deletion mutant under test conditions 3 nhr-69 deletion mutant synchronized adult worms whole organism 5 µM ADD 7a-HADD

SRP185924: RNA-seq using the Cel-Seq2 method, of wild type and 35-polyglutamine (polyQ35) expressing C. elegans worms treated with RNAi toward anc-1, or left untreated (EV) gene expression profiles.

Ehud Cohen, Biochemistry and Molecular Biology, The Hebrew University of Jerusalem

Design: 14 conditions

Condition num. replicates Description title Genotype Strain Developmental stage Source name
SRR8580020 1 NT11_WT_EV_1 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580021 1 NT12_WT_anc-1_1 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580022 1 NT21_WT_EV_2 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580023 1 NT22_WT_anc-1_2 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580024 1 NT31_WT_EV_3 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580025 1 NT32_WT_anc-1_3 wild type N2 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580026 1 AM11_Q35_EV_1 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580027 1 AM12_Q35_anc-1_1 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580028 1 AM21_Q35_EV_2 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580029 1 AM22_Q35_anc-1_2 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580030 1 AM31_Q35_EV_3 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580031 1 AM32_Q35_anc-1_3 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580032 1 AM41_Q35_EV_4 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate
SRR8580033 1 AM42_Q35_anc-1_4 unc-54p::Q35-YFP AM140 day 6 of adulthood Caenorhabditis elegans homogenate

SRP186357: Wounding triggers MIRO-1 dependent mitochondrial fragmentation that accelerates epidermal wound closure through oxidative metabolic signaling

Zhejiang University

Design: 6 conditions

Condition num. replicates Breed Isolate Isolation source Sample name Collection date Description title Geographic location Organism part
N2_rep1 1 repeat1 wild type N2 N2_rep1 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism
N2_rep2 1 repeat2 wild type N2 N2_rep2 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism
N2_rep3 1 repeat3 wild type N2 N2_rep3 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism
fzo-1_rep1 1 repeat1 mutant tm1133 fzo-1_rep1 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism
fzo-1_rep2 1 repeat2 mutant tm1133 fzo-1_rep2 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism
fzo-1_rep3 1 repeat3 mutant tm1133 fzo-1_rep3 2017-11-03 Invertebrate sample from Caenorhabditis elegans China whole organism

SRP187904: The transcription factors TFEB and TFE3 link the FLCN-AMPK signaling axis to innate immune response and pathogen resistance [RNA-seq]

Bourque Lab, McGill University

The Transcription Factors TFEB and TFE3 Link the FLCN-AMPK Signaling Axis to Innate Immune Response and Pathogen Resistance. (El-Houjeiri .. Pause, 2019)

Design: 12 conditions

Condition num. replicates Description title Genotype Source name Treatment Developmental stage Organism part
SRR8698443 1 AAKOP_1 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Escherichia coli OP50 L4-young adult whole organism
SRR8698444 1 AAKOP_2 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Escherichia coli OP50 L4-young adult whole organism
SRR8698445 1 AAKOP_3 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Escherichia coli OP50 L4-young adult whole organism
SRR8698446 1 AAKSau_1 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Staphylococcus aureus (MW2) L4-young adult whole organism
SRR8698447 1 AAKSau_2 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Staphylococcus aureus (MW2) L4-young adult whole organism
SRR8698448 1 AAKSau_3 aak-1; aak-2 aak-1(tm1944); aak-2(ok524) Staphylococcus aureus (MW2) L4-young adult whole organism
SRR8698449 1 WtOP50_1 wild type WT Escherichia coli OP50 L4-young adult whole organism
SRR8698450 1 WtOP50_2 wild type WT Escherichia coli OP50 L4-young adult whole organism
SRR8698451 1 WtOP50_3 wild type WT Escherichia coli OP50 L4-young adult whole organism
SRR8698452 1 WtSau_1 wild type WT Staphylococcus aureus (MW2) L4-young adult whole organism
SRR8698453 1 WtSau_2 wild type WT Staphylococcus aureus (MW2) L4-young adult whole organism
SRR8698454 1 WtSau_3 wild type WT Staphylococcus aureus (MW2) L4-young adult whole organism

SRP188146: Caenorhabditis elegans Transcriptome

Georgia Institute of Technology

Design: 47 conditions

Condition num. replicates Developmental stage Sample name Strain Treatment Description title Organism part Sex
CX12311_1 1 young adult CX12311_1 CX12311 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
CX12311_2 1 young adult CX12311_2 CX12311 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
CX12311_3 1 young adult CX12311_3 CX12311 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
LSJ2_1 1 young adult LSJ2_1 LSJ2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
LSJ2_2 1 young adult LSJ2_2 LSJ2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
LSJ2_3 1 young adult LSJ2_3 LSJ2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_1 1 L4 N2_2hrHS_1 N2 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_2 1 L4 N2_2hrHS_2 N2 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_3 1 L4 N2_2hrHS_3 N2 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_R_1 1 L4 N2_2hrHS_R_1 N2 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_R_2 1 L4 N2_2hrHS_R_2 N2 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_2hrHS_R_3 1 L4 N2_2hrHS_R_3 N2 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_4hrHS_1 1 L4 N2_4hrHS_1 N2 4 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_4hrHS_2 1 L4 N2_4hrHS_2 N2 4 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_4hrHS_3 1 L4 N2_4hrHS_3 N2 4 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_52hr_1 1 52hrs N2_52hr_1 N2 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_52hr_2 1 52hrs N2_52hr_2 N2 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_52hr_3 1 52hrs N2_52hr_3 N2 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_60hr_1 1 60hrs N2_60hr_1 N2 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_60hr_2 1 60hrs N2_60hr_2 N2 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_60hr_3 1 60hrs N2_60hr_3 N2 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_ctrl_1 1 L4 N2_ctrl_1 N2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_ctrl_2 1 L4 N2_ctrl_2 N2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
N2_ctrl_3 1 L4 N2_ctrl_3 N2 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_52hr_1 1 52hrs NARLi_52hr_1 PTM416 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_52hr_2 1 52hrs NARLi_52hr_2 PTM416 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_52hr_3 1 52hrs NARLi_52hr_3 PTM416 normal growth for 52hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_60hr_1 1 60hrs NARLi_60hr_1 PTM416 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_60hr_2 1 60hrs NARLi_60hr_2 PTM416 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
NARLi_60hr_3 1 60hrs NARLi_60hr_3 PTM416 normal growth for 60hrs Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM66_1 1 young adult PTM66_1 PTM66 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM66_2 1 young adult PTM66_2 PTM66 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM66_3 1 young adult PTM66_3 PTM66 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM88_1 1 young adult PTM88_1 PTM88 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM88_2 1 young adult PTM88_2 PTM88 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
PTM88_3 1 young adult PTM88_3 PTM88 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_1 1 L4 fdel_2hrHS_1 PTM512 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_2 1 L4 fdel_2hrHS_2 PTM512 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_3 1 L4 fdel_2hrHS_3 PTM512 2 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_R_1 1 L4 fdel_2hrHS_R_1 PTM512 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_R_2 1 L4 fdel_2hrHS_R_2 PTM512 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_2hrHS_R_3 1 L4 fdel_2hrHS_R_3 PTM512 2 hours heatshock and recovery Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_4hrHS_2 1 L4 fdel_4hrHS_2 PTM512 4 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_4hrHS_3 1 L4 fdel_4hrHS_3 PTM512 4 hours heatshock Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_ctrl_1 1 L4 fdel_ctrl_1 PTM512 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_ctrl_2 1 L4 fdel_ctrl_2 PTM512 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite
fdel_ctrl_3 1 L4 fdel_ctrl_3 PTM512 normal growth Model organism or animal sample from Caenorhabditis elegans whole organism hermaphrodite

SRP188258: A beneficial genomic rearrangement creates multiple versions of calcipressin in C. elegans

Georgia Institute of Technology

Design: 12 conditions

Condition num. replicates Breeding history Sample name Strain Description title Developmental stage Organism part Sex
RNAseq_CX12311_1 1 Near-isogneic line RNAseq_CX12311_1 CX12311 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_CX12311_2 1 Near-isogneic line RNAseq_CX12311_2 CX12311 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_CX12311_3 1 Near-isogneic line RNAseq_CX12311_3 CX12311 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_CX12311_4 1 Near-isogneic line RNAseq_CX12311_4 CX12311 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL1-1 1 Recombinant inbred line RNAseq_rcan-1_NIL1-1 PTM413 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL1-2 1 Recombinant inbred line RNAseq_rcan-1_NIL1-2 PTM413 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL1-3 1 Recombinant inbred line RNAseq_rcan-1_NIL1-3 PTM413 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL1-4 1 Recombinant inbred line RNAseq_rcan-1_NIL1-4 PTM413 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL2-1 1 Recombinant inbred line RNAseq_rcan-1_NIL2-1 PTM414 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL2-2 1 Recombinant inbred line RNAseq_rcan-1_NIL2-2 PTM414 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL2-3 1 Recombinant inbred line RNAseq_rcan-1_NIL2-3 PTM414 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite
RNAseq_rcan-1_NIL2-4 1 Recombinant inbred line RNAseq_rcan-1_NIL2-4 PTM414 Model organism or animal sample from Caenorhabditis elegans L4 whole organism hermaphrodite

SRP192010: RNA-seq for sf3b-1 alleles

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Design: 10 conditions

Condition num. replicates Description title Developtmental stage Genotype Strain Source name
SAMN11397591 1 sftb-1(cer6) rep2 L2 stage cer6 is a deletion allele synchronized animal population
SAMN11397592 1 sftb-1(cer6) rep1 L2 stage cer6 is a deletion allele synchronized animal population
SAMN11397593 1 sftb-1(cer39) rep2 L2 stage cer39[K718E,R643C,Q552P] synchronized animal population
SAMN11397594 1 sftb-1(cer39) rep1 L2 stage cer39[K718E,R643C,Q552P] synchronized animal population
SAMN11397595 1 WT-L2 rep2 L2 stage wild type N2 synchronized animal population
SAMN11397596 1 WT-L2 rep1 L2 stage wild type N2 synchronized animal population
SRR8882155 1 WT-L4 rep1 L4 stage wild type N2 from cer3 outcross synchronized animal population
SRR8882156 1 WT-L4 rep2 L4 stage wild type N2 from cer7 outcross synchronized animal population
SRR8882157 1 sftb-1(cer3) rep1 L4 stage cer3[K718E] synchronized animal population
SRR8882158 1 sftb-1(cer7) rep2 L4 stage cer7[K718E] synchronized animal population

SRP192875: Effects of cadmium and integrator complex knockdown on gene expression and mRNA splicing

University of Saskatchewan

Design: 18 conditions

Condition num. replicates Description title Genotype Source name Treatment Organism part Strain
SRR8923444 1 N2_empty vector_control_rep1 wild type N2_empty vector_control, whole animal control whole organism N2
SRR8923445 1 N2_empty vector_control_rep2 wild type N2_empty vector_control, whole animal control whole organism N2
SRR8923446 1 N2_empty vector_control_rep3 wild type N2_empty vector_control, whole animal control whole organism N2
SRR8923447 1 N2_empty vector_cadmium_rep1 wild type N2_empty vector_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923448 1 N2_empty vector_cadmium_rep2 wild type N2_empty vector_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923449 1 N2_empty vector_cadmium_rep3 wild type N2_empty vector_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923450 1 N2_numr-1 RNAi_control_rep1 numr-1 knockdown N2_numr-1 RNAi_control, whole animal control whole organism N2
SRR8923451 1 N2_numr-1 RNAi_control_rep2 numr-1 knockdown N2_numr-1 RNAi_control, whole animal control whole organism N2
SRR8923452 1 N2_numr-1 RNAi_control_rep3 numr-1 knockdown N2_numr-1 RNAi_control, whole animal control whole organism N2
SRR8923453 1 N2_numr-1 RNAi_cadmium_rep1 numr-1 knockdown N2_numr-1 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923454 1 N2_numr-1 RNAi_cadmium_rep2 numr-1 knockdown N2_numr-1 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923455 1 N2_numr-1 RNAi_cadmium_rep3 numr-1 knockdown N2_numr-1 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923456 1 N2_ints-4 RNAi_control_rep1 ints-4 knockdown N2_ints-4 RNAi_control, whole animal control whole organism N2
SRR8923457 1 N2_ints-4 RNAi_control_rep2 ints-4 knockdown N2_ints-4 RNAi_control, whole animal control whole organism N2
SRR8923458 1 N2_ints-4 RNAi_control_rep3 ints-4 knockdown N2_ints-4 RNAi_control, whole animal control whole organism N2
SRR8923459 1 N2_ints-4 RNAi_cadmium_rep1 ints-4 knockdown N2_ints-4 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923460 1 N2_ints-4 RNAi_cadmium_rep2 ints-4 knockdown N2_ints-4 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2
SRR8923461 1 N2_ints-4 RNAi_cadmium_rep3 ints-4 knockdown N2_ints-4 RNAi_cadmium, whole animal 300um Cadmium (12h) whole organism N2

SRP194189: The transcriptomic response to albendazole (ABZ), mebendazole (MBZ), thiabendazole (TBZ), oxfendazole (OxBZ) and fenbendazole (FBZ) in the C. elegans strain CB3474 ben-1(e1880)III

Faculty Veterinary Medicine, University of Calgary

Design: 18 conditions

Condition num. replicates Description title Drug Source name
SRR8987669 1 Ceben1DMSO1 DMSO Mixed stages of larva
SRR8987670 1 Ceben1ABZ3 ABZ Mixed stages of larva
SRR8987671 1 Ceben1DMSO3 DMSO Mixed stages of larva
SRR8987672 1 Ceben1ABZ2 ABZ Mixed stages of larva
SRR8987673 1 Ceben1DMSO2 DMSO Mixed stages of larva
SRR8987674 1 Ceben1ABZ1 ABZ Mixed stages of larva
SRR8987675 1 Ceben1TBZ2 TBZ Mixed stages of larva
SRR8987676 1 Ceben1MBZ1 MBZ Mixed stages of larva
SRR8987677 1 Ceben1TBZ3 TBZ Mixed stages of larva
SRR8987678 1 Ceben1TBZ4 TBZ Mixed stages of larva
SRR8987679 1 Ceben1MBZ2 MBZ Mixed stages of larva
SRR8987680 1 Ceben1MBZ3 MBZ Mixed stages of larva
SRR8987681 1 Ceben1FBZ1 FBZ Mixed stages of larva
SRR8987682 1 Ceben1FBZ2 FBZ Mixed stages of larva
SRR8987683 1 Ceben1FBZ3 FBZ Mixed stages of larva
SRR8987684 1 Ceben1OxBZ1 OxBZ Mixed stages of larva
SRR8987685 1 Ceben1OxBZ3 OxBZ Mixed stages of larva
SRR8987686 1 Ceben1OxBZ2 OxB Mixed stages of larva

SRP197111: Epigenetic bookmarking of H2S exposure in Caenorhabditis elegans

Biochemistry, University of Washington

Design: 12 conditions

Condition num. replicates Compound Description title Developmental stage Source name
SRR9029996 1 Unexposed replicate 1 L4 Whole animal
SRR9029997 1 Unexposed replicate 2 L4 Whole animal
SRR9029998 1 Unexposed replicate 3 L4 Whole animal
SRR9029999 1 Unexposed replicate 4 L4 Whole animal
SRR9030000 1 1 hr high (>150 ppm) hydrogen sulfide Naïve replicate 1 L4 Whole animal
SRR9030001 1 1 hr high (>150 ppm) hydrogen sulfide Naïve replicate 2 L4 Whole animal
SRR9030002 1 1 hr high (>150 ppm) hydrogen sulfide Naïve replicate 3 L4 Whole animal
SRR9030003 1 1 hr high (>150 ppm) hydrogen sulfide Naïve replicate 4 L4 Whole animal
SRR9030004 1 exposed to approx. 50 ppm hydrogen sulfide for approx 8 hr as embryos) exposed to 1 hr high hydrogen sulfide Bookmarked replicate 1 L4 Whole animal
SRR9030005 1 exposed to approx. 50 ppm hydrogen sulfide for approx 8 hr as embryos) exposed to 1 hr high hydrogen sulfide Bookmarked replicate 2 L4 Whole animal
SRR9030006 1 exposed to approx. 50 ppm hydrogen sulfide for approx 8 hr as embryos) exposed to 1 hr high hydrogen sulfide Bookmarked replicate 3 L4 Whole animal
SRR9030007 1 exposed to approx. 50 ppm hydrogen sulfide for approx 8 hr as embryos) exposed to 1 hr high hydrogen sulfide Bookmarked replicate 4 L4 Whole animal

SRP197132: Bulk RNA sequencing of cell specific profile of RIS

David M Miller III, Cell and Developmental Biology, Vanderbilt University

Design: 6 conditions

Condition num. replicates Description title
SRR9030237 1 GEO accession GSM3756330 is currently private and is scheduled to be released on Jul 08, 2019.
SRR9030238 1 GEO accession GSM3756331 is currently private and is scheduled to be released on Jul 08, 2019.
SRR9030239 1 GEO accession GSM3756332 is currently private and is scheduled to be released on Jul 08, 2019.
SRR9030240 1 GEO accession GSM3756333 is currently private and is scheduled to be released on Jul 08, 2019.
SRR9030241 1 GEO accession GSM3756334 is currently private and is scheduled to be released on Jul 08, 2019.
SRR9030242 1 GEO accession GSM3756335 is currently private and is scheduled to be released on Jul 08, 2019.

SRP199676: Ferritin regulation upon ETS-4/SPDEF depletion promotes cold survival in C. elegans

Rafal Ciosk group, Department of Biosciences, University of Oslo

Design: 16 conditions

Condition num. replicates Description title Genotype Source name Developmental stage Organism part Strain
SRR9137766 1 N2 20C rep1 wild type Wild type N2 grow at 20oC day 1 adult whole organism N2
SRR9137767 1 ets-4 20C rep1 ets-4(rrr16) X. ets-4 mutant grow at 20oC day 1 adult whole organism N2
SRR9137768 1 ets-4/daf-16 20C rep1 ets-4(rrr16) X./daf-16(mu86) I. ets-4/daf-16 double mutant grow at 20oC day 1 adult whole organism N2
SRR9137769 1 ets-4/pqm-1 20C rep1 ets-4(rrr16) X./pqm-1(ok485) II. ets-4/pqm-1 double mutant grow at 20oC day 1 adult whole organism N2
SRR9137770 1 N2 20C rep2 wild type Wild type N2 grow at 20oC day 1 adult whole organism N2
SRR9137771 1 ets-4 20C rep2 ets-4(rrr16) X. ets-4 mutant grow at 20oC day 1 adult whole organism N2
SRR9137772 1 ets-4/daf-16 20C rep2 ets-4(rrr16) X./daf-16(mu86) I. ets-4/daf-16 double mutant grow at 20oC day 1 adult whole organism N2
SRR9137773 1 ets-4/pqm-1 20C rep2 ets-4(rrr16) X./pqm-1(ok485) II. ets-4/pqm-1 double mutant grow at 20oC day 1 adult whole organism N2
SRR9137774 1 N2 24h4C rep1 wild type Wild type N2 grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137775 1 ets-4 24h4C rep1 ets-4(rrr16) X. ets-4 mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137776 1 ets-4/daf-16 24h4C rep1 ets-4(rrr16) X./daf-16(mu86) I. ets-4/daf-16 double mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137777 1 ets-4/pqm-1 24h4C rep1 ets-4(rrr16) X./pqm-1(ok485) II. ets-4/pqm-1 double mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137778 1 N2 24h4C rep2 wild type Wild type N2 grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137779 1 ets-4 24h4C rep2 ets-4(rrr16) X. ets-4 mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137780 1 ets-4/daf-16 24h4C rep2 ets-4(rrr16) X./daf-16(mu86) I. ets-4/daf-16 double mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2
SRR9137781 1 ets-4/pqm-1 24h4C rep2 ets-4(rrr16) X./pqm-1(ok485) II. ets-4/pqm-1 double mutant grow at 20oC with 24 hours 4oC treatment day 1 adult whole organism N2

Other

These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!

DRP000898: mRNAseq for the unc-75 mutant

DRP002871: mRNA-seq of N2 and smg-2 to identify NMD isoforms

TOKYO_MEDEN

2 runs in ENA

DRP004388: Transcriptome analysis between wild-type and endu-2 mutant

KONAN

15 runs in ENA

ERP003471: RNA-seq transcript assembly evaluation

European Molecular Biology Laboratory

To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLIDE, Transomics, Trembly, Tromer and Velvet) were evaluated against transcriptome data from human cells and two model organisms.
E-MTAB-1730 in ArrayExpress

3 runs in ENA

ERP010876: MML-1/Mondo complexes regulate HLH-30/TFEB via TOR inhibition to promote longevity in response to signals from the reproductive system

Max Planck Institute for Biology of Ageing

Comprehensive transcriptome analysis of hlh-30, mml-1 and mxl-2 in N2 (wildtype) and glp-1 background.
E-MTAB-3686 in ArrayExpress

32 runs in ENA

ERP013714: Functional sequestration of MOAG-2/LIR-3 by polyglutamine expansion proteins

European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen

Transcriptome profiling of Lir3 C.elegans mutants. Larval stage L4 worms were used for RNA isolation from N2 (Bristol), Q40 (polyglutamine model) genetic background; Lir3 and wiltype controls. Experiments were done in triplicates using ribosomal RNA depletion. Libraries were sequenced with 50bp reads on Illumina HiSeq2500 platform
E-MTAB-4172 in ArrayExpress

27 runs in ENA

ERP014488: Differential gene analysis to identify genes expressed in AMsh glia and genes that are pros-1-dependent in C. elegans

THE ROCKEFELLER UNIVERSITY

AMsh glia were isolated from C. elegans L4 larvae by FACS, based on expression of a dsRed marker under control of the AMsh glia-specific marker F16F9.3. From control animals, dsRed-positive and dsRed-negative samples were compared to identify AMsh glia-enriched genes. To identify glial targets of the transcription factor pros-1/Prospero, dsRed-positive samples from control and pros-1(RNAi) animals were compared.

10 runs in ENA

ERP015607: RNA-seq analysis of C. elegans CPEB homolog mutants.

Institute of Molecular Life Sciences, University of Zurich

Comparative transcriptomics study between C. elegans wild-type N2 and CPEB homolog mutants: fog-1, cpb-2, and cpb-3.
E-MTAB-4720 in ArrayExpress

27 runs in ENA

ERP016265: Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans

Department of Biochemistry and Molecular Biology University of Southern Denmark

RNA-seq of C.elegans strain N2 (wt) with and without sfa-1 RNAi at adult day 3 and day 15, C. elegans strain DA1116 (eat-2(ad1116)) with and without sfa-1 RNAi at adult day 3, day 15, and day 27, C. elegans strain SS104 (glp-4(bn2)) with and without hrp-2 RNAi at adult day 1, and HeLa cells with and without SF1 siRNA.
E-MTAB-4866 in ArrayExpress

42 runs in ENA

ERP016404: RNA-Seq of Caenorhabditis elegans Mi2-depleted embryos at 24- and 100-cell stages

University of Fribourg Biology department Zoology institute

We aimed at identifying the transcriptomes of single and double mutants of the two C.elegans Mi2 homologues, let-418 and chd-3. Embryos depleted for one or both genes were manually sorted and synchronised at the 24- and 100-cell stages, and their transcriptome compared to control embryos in order to identify de-regulated target genes, and determine whether the two Mi2 proteins are functionally redundant.
E-MTAB-4714 in ArrayExpress

23 runs in ENA

ERP016462: Small RNA and total RNA sequencing of C. elegans with mutations in the hrde-1 and emb-4 genes

Gurdon Institute

E-MTAB-4877 in ArrayExpress

12 runs in ENA

ERP016513: Analysis of post-transcriptional RNA modifications in Caenorhabditis elegans under stress

Gurdon Institute

Syncronised population of L1 animals were grown until young adult stage. For heat stress, animals were heat-shocked at 37℃ for 4hrs with food. For starvation experiments, young adult stage animals were plated on either food plates for control or on empty plates for starvation at 20℃ for 4hrs.
E-MTAB-4940 in ArrayExpress

9 runs in ENA

ERP110557: RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans

KU Leuven, Centre of Microbial and Plant Genetics (CMPG)

This study uses total and polysomal RNA-sequencing to show that the translational efficiencies of specific mRNAs change depending on the mitochondrial activity in longer-lived C. elegans.
E-MTAB-7166 in ArrayExpress

49 runs in ENA

ERP111974: RNA-seq analysis of C. elegans mina-1 mutants

University Children’s Hospital Basel, University of Basel, Spitalstrasse 33, 4056 Basel, Switzerland

Comparative transcriptomics study between C. elegans wild-type N2 and mina-1 mutants.
E-MTAB-7389 in ArrayExpress

6 runs in ENA

ERP112306: CLIP-seq analysis of C.elegans MINA-1::GFP transgenic animals.

Institute of Pharmaceutical Sciences, ETH Zurich

Analysis to determine which mRNAs are specifically associated with MINA-1 protein.
E-MTAB-7420 in ArrayExpress

1 run in ENA

SRP000244: Whole-genome sequencing and variant discovery in Caenorhabditis elegans by Illumina sequencing

SRP000401: Deep sequencing of the Caenorhabditis elegans transcriptome using RNA isolated from various developmental stages under various experimental conditions RW0001

modENCODE

The goal of this study, started as a part of the modENCODE project, is to detect and characterize previously unannotated transcripts of the C. elegans genome.
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. (Hillier .. Waterston, 2009)

540 runs in ENA

SRP001010: A high resolution transcriptome map for both wild-type and NMD defective C. elegans

SRP003492: Caenorhabditis angaria genome sequencing project

SRP003783: Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome

SRP003896: Formation, regulation and evolution of 3'' UTRs in Caenorhabditis elegans

SRP008241: Analysis of Caenorhabditis elegans intestinal gene expression and alternative polyadenylation using fluorescence-activated nuclei sorting (FANS) and 3' end deep sequencing (3'end-seq)

SRP009274: In vivo and transcriptome-wide identification of RNA-binding protein target sites [RNA-Seq]

SRP010646: Caenorhabditis elegans strain:N2, adr-1, adr-2, adr-1;adr-2 Transcriptome or Gene expression

SRP011038: Impaired Insulin-/IGF1-Signaling Extends Life Span by Promoting Mitochondrial L-Proline Catabolism to Induce a Transient ROS-Signal

SRP012065: Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans

CAS Key Laboratory of RNA Biology, Institute of Biophysics, Chinsese Academy of Sciences

Identification of intermediate-size non-coding RNAs involved in the UV-induced DNA damage response in C. elegans. (Li .. Chen, 2012)

3 runs in ENA

SRP014544: RNA-seq quantification of expression changes upon unc-62 knockdown in adult Caenorhabditis elegans.

SRP014581: Caenorhabditis elegans sperm mRNAome sequencing

Institute of Biophysics

1 run in ENA

SRP014826: C. elegans piRNAs are processed from capped-small RNAs transcribed at promoters throughout the genome

Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School

CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. (Gu .. Mello, 2012)

1 run in ENA

SRP015332: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes

Raetsch Lab, Computational Biology, Memorial Sloan Kettering Cancer Center

Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. (Smith .. Rätsch, 2012)

4 runs in ENA

SRP015918: Influence of p38 MAPK (PMK-1) on the heat stress response of C. elegans

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

6 runs in ENA

SRP017438: Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq]

SRP017486: The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel regulatory architecture

SRP017908: DAF-16/FOXO uses SWI/SNF to regulate transcription.

Massachusetts General Hospital

8 runs in ENA

SRP018033: NO-mediated transcriptional response in C. elegans

SRP018867: Next generation sequencing facilitates quantitative analysis of Caenorhabditis elegans N2 wild type, emr-1(gk119), lem-2(tm1582) and emr-1(RNAi) lem-2(tm1582) transcriptomes.

SRP020357: Genome-wide distribution of the three condensin complexes in C. elegans

SRP021083: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of rotenone at 4 different time points

Leibniz Institute for Age Research - Fritz Lipmann Institute

22 runs in ENA

SRP021462: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of arsenite

Leibniz Institute for Age Research - Fritz Lipmann Institute

Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension. (Schmeisser .. Ristow, 2013)

4 runs in ENA

SRP021487: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence of 2-deoxy-D-glucose (DOG) at 4 different time points

SRP023261: Caenorhabditis elegans Transcriptome or Gene expression

The Genome Institute

6 runs in ENA

SRP023543: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

institute of biophysics

2 runs in ENA

SRP027592: Dampening of expression oscillations by synchronous regulation of a microRNA and its target

SRP028602: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of 1-methylnicotinamide (MNA) and nicotinic acid (NA)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. (Schmeisser .. Ristow, 2013)

9 runs in ENA

SRP028863: Profiling of RNA editing in Caenorhabditis elegans

Center of Bioinformatics, Peking University

17 runs in ENA

SRP028875: Global effects of the CSR-1 RNA interference pathway on transcriptional landscape

Alla Grishok, Biochemistry and Molecular Biophysics, Columbia University

Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape. (Cecere .. Grishok, 2014)

6 runs in ENA

SRP030526: Caenorhabditis elegans Transcriptome or Gene expression

SRP031831: The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome

SRP033410: Extensive oscillatory gene expression during C. elegans larval development [RNA-seq for polyA enriched mRNAs]

SRP033412: Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]

SRP034522: Conservation of mRNA and protein expression during development of C. elegans

Max Planck Institute of Immunobiology and Epigenetics

Conservation of mRNA and protein expression during development of C. elegans. (Grün .. Rajewsky, 2014)

6 runs in ENA

SRP034667: Male and Female DNA and RNA sequencing in several nematode species

SRP035281: A Genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis

SRP035507: Caenorhabditis elegans transcriptome, in response to albendazole

SRP036048: mRNAs that co-purify with OMA-1 in the C. elegans germline (sequencing)

SRP037555: RNA-seq of C.elegans and M.musculus in the presence and absence of D-Glucosamine (GlcN)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

D-Glucosamine supplementation extends life span of nematodes and of ageing mice. (Weimer .. Ristow, 2014)

12 runs in ENA

SRP038704: RNA-seq analysis of WT and blmp-1(tm548) mutant L3 larvae

SRP038903: Caenorhabditis elegans ALA neuron transcriptome (wild-type, mid-L4 larval stage)

Cornell University

2 runs in ENA

SRP038923: Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL RNA-Seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP040269: mRNA profile in DR-related mutants

SRP040623: The expression mRNAs after prg-1 mutation

Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences

The influences of PRG-1 on the expression of small RNAs and mRNAs. (Wang .. Huang, 2014)

4 runs in ENA

SRP041095: Caenorhabditis elegans Transcriptome or Gene expression

SRP041461: A new dataset of spermatogenic vs oogenic transcriptomes in the nematode C. elegans

SRP041708: Paternal RNA contributions in the C. elegans zygote

Max Planck Institute of Immunobiology and Epigenetics

Paternal RNA contributions in the Caenorhabditis elegans zygote. (Stoeckius .. Rajewsky, 2014)

15 runs in ENA

SRP042044: Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes

Laboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School

Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. (Visvikis .. Irazoqui, 2014)

8 runs in ENA

SRP042619: Global characterization of the oocyte-to-embryo transition in C. elegans uncovers a novel mRNA turnover mechanism

SRP043683: Neuronal CRTC-1 governs systemic mitochondrial metabolism and lifespan via a catecholamine signal

SRP043990: The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms

SRP044752: The role of SPK-1 in alternative splicing regulation in C. elegans

SRP044765: Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [RNA-Seq]

SRP044802: Caenorhabditis elegans PAT-Seq of Intestine, pharynx and body muscle transcriptomes

Arizona State University

4 runs in ENA

SRP045231: Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1. (Nakad .. Schulenburg, 2016)

56 runs in ENA

SRP045499: Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans [RNA-Seq]

Michael Hengartner, Institute of Molecular Life Sciences, University of Zurich

Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans. (Subasic .. Hengartner, 2015)

12 runs in ENA

SRP045715: RNA-seq of C.elegans treated with bcat-1 RNAi and controls

Leibniz Institute for Age Research - Fritz Lipmann Institute

Branched-chain amino acid catabolism is a conserved regulator of physiological ageing. (Mansfeld .. Ristow, 2015)

6 runs in ENA

SRP045742: Caenorhabditis elegans strain:N2, rde-4::unc-69, hrde-1 Transcriptome or Gene expression

SRP045778: Caenorhabditis elegans high resolution developmental transcriptomic time-course

Yanai, Biology, Technion - Israel Institute of Technology

The mid-developmental transition and the evolution of animal body plans. (Levin .. Yanai, 2016)

86 runs in ENA

SRP047293: Differential gene expression in ahr-1 mutants compared to wild-type C. elegans

SRP047336: TDP-1, the C. elegans ortholog of TDP-43, limits the accumulation of double stranded RNA

Link Lab, Integrative Physiology, University of Colorado Boulder

TDP-1, the Caenorhabditis elegans ortholog of TDP-43, limits the accumulation of double-stranded RNA. (Saldi .. Link, 2014)

21 runs in ENA

SRP047464: The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.

Jay Hesselberth, Biochemistry and Molecular Gentetics, University of Colorado School of Medicine

The RtcB RNA ligase is an essential component of the metazoan unfolded protein response. (Kosmaczewski .. Hammarlund, 2014)

4 runs in ENA

SRP049280: Tri-methylation of lysine 36 on H3 restricts gene expression variation during aging and impacts lifespan

Siu Sylvia Lee, Molecular Biology and Genetics, Cornell University

Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span. (Pu .. Lee, 2015)

20 runs in ENA

SRP049395: The DREAM complex promotes gene body deposition of H2A.Z for target repression

Ahringer Lab, The Gurdon Institute, University of Cambridge

The DREAM complex promotes gene body H2A.Z for target repression. (Latorre .. Ahringer, 2015)

6 runs in ENA

SRP049413: Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)

SRP049596: RNA-seq analysis of germline stem cell removal and loss of SKN-1 in C. elegans

SRP050039: A variety of Dicer substrates in human and C. elegans (CEL RNA-seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP050116: Suppression of Transcriptional Drift Extends C. elegans Lifespan by Postponing the Onset of Mortality

SRP050505: Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

SRP051404: Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans towards pathogenic Bacillus thuringiensis

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis. (Yang .. Schulenburg, 2015)

24 runs in ENA

SRP051702: mRNA profiling of wildtype, germline depleted, NMD mutant C. elegans whole worms and wildtype dissected gonads

Alan Zahler, MCD Biology, University of California-Santa Cruz

Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans. (Ragle .. Zahler, 2015)

5 runs in ENA

SRP052923: Transcriptomic analysis of germline tumor in fasted C. elegans

Developmental Cell Biology, Biochemistry, Buchmann Institute for Molecular Life Sciences

Autophagy and modular restructuring of metabolism control germline tumor differentiation and proliferation in C. elegans. (Gomes .. Pohl, 2016)

5 runs in ENA

SRP053371: H3K36 methylation promotes longevity by enhancing transcriptional fidelity [Worm RNA-Seq]

Zaret Lab, Cell & Developmental Biology, The University of Pennsylvania

H3K36 methylation promotes longevity by enhancing transcriptional fidelity. (Sen .. Berger, 2015)

4 runs in ENA

SRP056286: Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [RNA-Seq]

SRP056647: Optimization of codon translation rates via tRNA modifications maintains proteome integrity

Max Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine

Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity. (Nedialkova .. Leidel, 2015)

8 runs in ENA

SRP057263: CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline

SRP057272: Endogenous DAF-16 genome-wide recruitment under low Insulin signalling condition in Caenorhabditis elegans

SRP057713: RNA sequencing of C. elegans lsm-1(tm3585) mutants at L3 stage

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Cytoplasmic LSM-1 protein regulates stress responses through the insulin/IGF-1 signaling pathway in Caenorhabditis elegans. (Cornes .. Cerón, 2015)

2 runs in ENA

SRP057881: Transcriptome analysis of N2 and flp-6 Caenorhabditis elegans at 25 °C

SRP058023: Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

University of California, Irvine

8 runs in ENA

SRP058746: Transcriptional profile of C. elegans following RNAi of elt-2 [L4 stage]

SRP058747: Transcriptional profile of C. elegans following over-expression of elt-2 [L4 stage & Day 13]

SRP058751: Transcriptional profile of C. elegans following RNAi of elt-2 [L1 stage]

SRP059743: RNA sequencing analysis of DAF-16 target gene expression when math-33 function is genetically inactivated

SRP062026: Defining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm

Biochemistry and Molecular Biology, Colorado State University

The function and regulation of the GATA factor ELT-2 in the C. elegans endoderm. (Wiesenfahrt .. McGhee, 2016)

2 runs in ENA

SRP062096: Transcriptome analysis of sexual dimorphism in the somatic gonadal precursor cells of Caenorhabditis elegans

SRP062881: daf-16/FoxO isoform-specific deletion mutants

SRP063616: RNA-seq from animals treated with RNAi against prp-8, prp-6, and prp-31

SRP064324: Osmosensory neurons modulate hypertonic stress resistance in C. elegans by controlling protein damage in non-neuronal cells

SRP064516: Translation Readthrough Mitigation

SRP064859: RNA-seq for monitoring expression changes in absence of chromatin anchoring

SRP066258: Caenorhabditis elegans Transcriptome or Gene expression

Princeton University

13 runs in ENA

SRP066352: A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions

Dept. of Cellular & Molecular Medicine, University of California San Diego, Ludwig Institute for Cancer Research, San Diego Branch

A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions. (Gerson-Gurwitz .. Desai, 2016)

68 runs in ENA

SRP066376: Whole RNA sequencing to identify targets of ets-4 that are responsible for rege-1 (C30F12.1) phenotype

SRP066378: Whole RNA sequencing to identify targets of the RNase domain protein encoded by rege-1 (C30F12.1)

SRP066585: Caenorhabditis elegans strain:Bristol Transcriptome or Gene expression

Monash University

4 runs in ENA

SRP066993: RNA-seq from L4 animals treated with RNAi against gfp (control), ham-3, and swsn-2.2

SRP067921: Ingested double-stranded RNA engages multiple silencing mechanisms in C. elegans

Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park

2 runs in ENA

SRP067973: Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis

SRP068357: Nuclear Envelope Retention of LINC Complexes Is Promoted by SUN-1 Oligomerization in the Caenorhabditis elegans Germ Line

SRP068497: mRNA sequencing in cde-1 mutants versus WT C. elegans infected by the Orsay virus

Gurdon Institute, University of Cambridge

6 runs in ENA

SRP068564: Transcriptome profiling of sterile daf-2; mes-1 double vs. mes-1 single mutants

SRP069865: Caenorhabditis elegans strain:Bristol N2 Raw sequence reads

University of Massachusetts Medical School

12 runs in ENA

SRP069872: Uncoupling X chromosome number from sex determination separates contribution of sex and X dose to sex-biased gene expression in C. elegans

SRP070204: TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-Autonomously in Caenorhabditis elegans

SRP070753: Mitochondrial stress induces chromatin reorganization to promote longevity and UPRmt

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPR(mt). (Tian .. Dillin, 2016)

18 runs in ENA

SRP071138: HLH-30/TFEB-mediated autophagy functions in a cell-autonomous manner for epithelium intrinsic cellular defense against bacterial pore-forming toxin in C. elegans

National Cheng Kung University

4 runs in ENA

SRP071287: Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity. (Merkwirth .. Dillin, 2016)

15 runs in ENA

SRP071967: dsRNAs expressed in C. elegans development

SRP072091: Transcriptional profile of C. elegans fed E. coli (OP50) and B. subtilis (PY79)

SRP072327: Anchoring of Heterochromatin to the Nuclear Lamina Reinforces Dosage Compensation-Mediated Gene Repression

SRP072711: Caenorhabditis elegans Periodic An/Tn Clusters

Stanford University

5 runs in ENA

SRP072746: Localization of RNAPII and 3’ end formation factor CstF subunits on C. elegans genes and operons [RNA-seq]

CU Boulder

8 runs in ENA

SRP072954: XRN2 Autoregulation and Control of Polycistronic Gene Expression in Caenorhabditis elegans

SRP073117: Post-transcriptional regulation by the let-7 microRNA and the TRIM-NHL protein LIN41 [RNA-seq]

SRP074175: mRNA expression profile of dop-1 mutants to wild- type animals during adulthood (L4+48 hours) using RNA-seq

Room 33, Department of Genetics, Waksman Institute, Rutgers The State University of New Jersey

Dopamine signaling promotes the xenobiotic stress response and protein homeostasis. (Joshi .. Rongo, 2016)

6 runs in ENA

SRP075274: RNA-seq analysis in C. elegans larval development and heat shock

SRP075276: RNA-seq analysis of hsf-1 mutant in C. elegans larval development

SRP075489: Germline- and soma-specific heritable epigenetic silencing at an endogenous locus (RNA-Seq)

Craig P. Hunter, Molecular and Cellular Biology, Harvard University

Stable Heritable Germline Silencing Directs Somatic Silencing at an Endogenous Locus. (Minkina .. Hunter, 2017)

8 runs in ENA

SRP075984: Caenorhabditis elegans strain:N2 Raw sequence reads

Arizona State University

10 runs in ENA

SRP076298: A-to-I RNA editing promotes developmental-stage specific gene and lncRNA expression

SRP076404: Expression profiles in Caenorhabditis elegans mutants lacking an intestinally expressed microRNA mir-60 that promote adaptive response against chronic oxidative stress

The Laboratory of Ageing, Centenary Institute, The University of Sydney

An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans. (Kato .. Cheng, 2016)

14 runs in ENA

SRP076415: Developmental transcriptomes of the two sexes in Caenorhabditis elegans during sexual maturation

Scott Emmons lab, Genetics, Albert Einstein College of Medicine

Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans. (Kim .. Emmons, 2016)

10 runs in ENA

SRP076810: Transgenerational transmission of environmental information in C. elegans

SRP076816: GEO accession GSE83523 is currently private and is scheduled to be released on Jul 05, 2018.

Technion

2022 runs in ENA

SRP077649: Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

SRP078295: The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

University of South Florida

8 runs in ENA

SRP078331: An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males

SRP078368: C. elegans polyA selected RNA-seq raw sequencing reads

University of California, San Diego

6 runs in ENA

SRP078939: Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase

SRP080806: Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but required for RNA:DNA hybrid-associated repeat stability

Friedrich Miescher Institute for Biomedical Research

18 runs in ENA

SRP081065: Caenorhabditis elegans Transcriptome or Gene expression

Kunming Institute of Botany, Chinese Academy of Sciences

6 runs in ENA

SRP081238: Comparison of transcriptomes of sig-7 (RNAi) vs WT C. elegans early stage embryos by RNA-seq

MCD Biology, UC Santa Cruz

4 runs in ENA

SRP082984: LIN-28 balances longevity and germline stem cell number in C. elegans through let-7/AKT/DAF-16 axis

Jing-Dong J. Han's Lab, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

LIN-28 balances longevity and germline stem cell number in Caenorhabditis elegans through let-7/AKT/DAF-16 axis. (Wang .. Han, 2017)

4 runs in ENA

SRP084244: Comparative transcriptomics of Steinernema and Caenorhabditis single embryos reveals gene expression divergence during early embryogenesis

SRP086954: Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes SKN-1, IRE-1, and XBP-1

SRP089617: Caenorhabditis elegans Transcriptome or Gene expression

National Institute of Immunology

28 runs in ENA

SRP089981: Transcriptomic profiling of germlines and intestines of C. elegans deficient in the COMPASS H3K4me3 methyltransferase complex

SRP090119: mRNA Next Generation Sequencing of long-lived C. elegans mutants lacking the replication-independent histone variant H3.3

SRP090696: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress [RNA-seq]

SRP090699: Developmental constraints shape the evolution of the nematode mid-developmental transition

Technion

161 runs in ENA

SRP090988: Cooperation between a hierarchical set of recruitment sites specifically targets the C. elegans dosage compensation complex to the X chromosomes.

Ercan, Biology, New York University

6 runs in ENA

SRP092256: Gene expression changes in dauer defective strains

SRP093385: morc-1 regulates transgenerational heterochromatin maintenance at nuclear RNAi targets

SRP094762: mRNA-seq comparison of L1 larvae experiencing osmotic and starvation-induced arrest

SRP094827: RNA-seq of N2 and lin-45(n2018) mutant C.elegans responses to osmotic stress

SRP095453: Transcriptome profiling of P-granule-depleted or P-granule mutant gonads versus control gonads over time

SRP095467: L4, day 1, day 7 and day 10 old total RNA-Seq from Caenorhabditis elegans

University of Nevada, Reno

12 runs in ENA

SRP095671: RNA-Seq analysis of dietary restriction and loss of SEK-1 in C. elegans

Keith Blackwell, Islet Cell and Regenerative Biology, Joslin Diabetes Center

12 runs in ENA

SRP095719: The C. elegans transcriptome is regulated by environmental and developmental history

Life Sciences Complex, Biology, Syracuse University

16 runs in ENA

SRP095954: JMJD5/PHF8 regulates H3K36me2 and it is required for late steps of homologous recombination and genome integrity

SRP096640: Caenorhabditis elegans LITE-Seq germline 3''UTR sequencing

New York University

28 runs in ENA

SRP096897: Activation of DAF-16/FOXO by reactive oxygen species promotes longevity in long- lived mitochondrial mutants in C. elegans

Center For Neurodegenerative Science, Van Andel Research Institute

51 runs in ENA

SRP097655: Transcriptomics of a diet gene pair in C. elegans

National Institute of Immunology

flr-4 gene (wormbase)

5 runs in ENA

SRP097783: Analysis of nonsense-mediated mRNA decay in daf-2 mutants

SRP098734: Genome-wide expression analysis of Caenorhabditis elegans AXIN mutant

SRP098791: The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans

SRP098805: A Highly Conserved GAD-1 Is Required for Pre-mRNA Splicing and Transcription Elongation by Forming Spliceosome with NineTeen Complex

Hong Kong Baptist University

2 runs in ENA

SRP099636: Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT)

SRP100172: Impaired DNA replication derepresses chromatin and generates a transgenerationally inherited epigenetic memory

SRP100571: Role of STA-1 and SID-3 upon Orsay virus infection in C. elegans (RNA-Seq)

Gurdon Institute, University of Cambridge

36 runs in ENA

SRP100601: RNA-sequencing of C.elegans isp-1 mutant and superoxide dismutase-isp-1 double mutants

SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes

Washington University in St. Louis

16 runs in ENA

SRP101574: RNAseq of C. elegans N2 raised on LB- and M9-cultured E. coli MG1655

Baylor College of Medicine

6 runs in ENA

SRP103653: Caenorhabditis elegans RNA-seq project

Peking University School of Stomatology

4 runs in ENA

SRP103917: Two distinct transcription termination modes dictated by promoters

SRP104170: The role of the TGF-ß/DBL-1 pathway in shaping the C. elegans gut microbiota

UC Berkeley

12 runs in ENA

SRP104288: Impaired locomotor behavior of C. elegans neuroligin mutants is dependent of the catechol-O-methyltransferase COMT-4

SRP105206: A Chinese herbal formula, Gengnianchun, ameliorates ß-amyloid peptide toxicity in a Caenorhabditis elegans model of Alzheimer's disease

SRP106459: mRNA-seq comparison of N2 and tps1;tps2 double mutants with and without trehalose supplementation

SRP106801: RNA binding proteins in C. elegans

Harvard University

8 runs in ENA

SRP106869: Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex

Ohler, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. (Kolundzic .. Tursun, 2018)

15 runs in ENA

SRP106988: The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

UCSD

6 runs in ENA

SRP107232: Global proteomic- and transcriptomic analyses of starvation responses reveal a central role for lipoprotein metabolism in acute starvation survival in C. elegans

SRP107241: ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline

SRP108932: The rules of piRNA targeting reveals resistance of endogenous genes to piRNA silencing in C. elegans

University of Chicago

1 run in ENA

SRP109222: RNA-seq of C. elegans worms treated with RNAi toward daf-2 or cav-1 or left untreated (EV) to compare gene expression profiles

The Hebrew University of Jerusalem

6 runs in ENA

SRP110292: Global Gene Expression profile in homozygous frk-1(ok760) mutants versus wildtype in the nematode, Caenorhabditis elegans using RNA Seq

Cold Spring Harbor Laboratory

RNA-Seq for the Next Generation Project

6 runs in ENA

SRP110515: Beyond the polymerase-gamma theory: Respiratory chain inhibition and production of ROS as modes of NRTI induced mitochondrial toxicity

SRP110703: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

SRP110754: Chromatin reprogramming in primordial germ cells requires Nanos-dependent down-regulation of the synMuvB transcription factor LIN-15B

SRP110800: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

Cornell University Lee lab

8 runs in ENA

SRP111062: H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility [RNA-seq]

SRP111138: The C. elegans ortholog of TDP-43 regulates the chromatin localization of the heterochromatin protein 1 homolog, HPL-2

SRP111346: Global characterization of direct substrates of nonsense-mediated mRNA decay in Caenorhabditis elegans

SRP112567: Variations in diet type and temperature significantly affect the transcriptional profile of C. elegans

SRP112904: Transcriptomic analysis of wild-type and lin-22 mutants in C.elegans

SRP112905: Transcriptomic analysis of control and Myzocytiopsis humicola-infected C. elegans

Michalis Barkoulas's lab, Life Sciences, Imperial College London

48 runs in ENA

SRP113021: RNA-seq of C.elegans sma-4(rax3), sma-2(rax5) and wild-type strains

Baylor College of Medicine

9 runs in ENA

SRP113614: Indole from commensal bacteria impact the aging transcriptome of C. elegans

Kalman Lab, Pathology & Laboratory Medicine, Emory University

Indoles from commensal bacteria extend healthspan. (Sonowal .. Kalman, 2017)

11 runs in ENA

SRP114957: RNAseq of FACS-sorted C.elegans neurons from wildtype and thoc-5(wy822) mutant animals.

SRP115391: Caenorhabditis elegans Raw sequence reads NHL-2

University of Massachusetts Medical School

12 runs in ENA

SRP115483: Two evolutionary developmental strategies for miRNA gene regulation in animal embryogenesis [CE_RNA-seq]

Itai Yanai, Biochemistry and Molecular Pharmacology, New York University, School of Medicine

Bimodal evolutionary developmental miRNA program in animal embryogenesis. (Avital .. Yanai, 2017)

24 runs in ENA

SRP116980: Dauer and reproductive development RNA-seq

California Institute of Technology

12 runs in ENA

SRP117631: Effect of liquid cultivations on N2 and AB1 strains of C. elegans

SRP117954: Evolution of piRNAs in nematodes

Peter Sarkies lab - MRC London Institute of Medical Sciences/Imperial College London

2 runs in ENA

SRP119100: Transcriptomic response to changes in C. elegans diet

BioCI

4 runs in ENA

SRP119250: RNA-Seq of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

3 runs in ENA

SRP119251: Poly(A) Tail Length of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

2 runs in ENA

SRP119353: The combinatorial control of alternative splicing in C. elegans

University of Toronto

6 runs in ENA

SRP120036: The effects of mitochondrial- and histone stress on the C. elegans transcriptome

SRP123154: An Elongin-Cullin-SOCS-box Complex Regulates Stress-induced Serotonergic Neuromodulation Stress-induced Serotonergic Neuromodulation

SRP124524: Transcriptome analysis of C. elegans embryos lacking ADARs and the 26G pathway

SRP124969: Differential expression of H3.3 genes and their role in modulating temperature stress response in Caenorhabditis elegans

SRP126163: Role of SKN-1 in dpy-7 and osmotic gene induction

SRP126312: NHR-49/HNF4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting

Taubert Lab, Medical genetics, Centre for Molecular Medicine and Therapeutics, UBC

32 runs in ENA

SRP126629: The zinc finger transcription factor PQM-1 is a mediator of transcellular chaperone signalling and novel regulator of proteostasis in C. elegans

Faculty of Biological Sciences, School of Molecular and Cell Biology, Garstang 8.53c, UNIVERSITY OF LEEDS

6 runs in ENA

SRP127051: Hypoxia-inducible factor cell non-autonomously regulates C. elegans stress responses and behavior via a nuclear receptor

SRP129557: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

University of California San Francisco

12 runs in ENA

SRP130946: SET-9 and SET-26 are H3K4me3 readers and play critical roles in germline development and longevity

SRP131397: Caenorhabditis elegans Raw sequence reads

University of Massachusetts Medical School

5 runs in ENA

SRP131463: Sequencing of Caenorhabditis elegans wildtype strain (N2) treated with T25B9.1 RNAi for 5 days after L4 larvae stage.

SRP132468: Ribotagging on NSM neurons in C. elegans

Flavell, Brain and Cognitive Sciences, MIT

8 runs in ENA

SRP133269: Role of mitochondrial unfolded protein response transcription fatcor ATFS-1 in lifespan of long-lived mitochondrial mutants

Van Andel Institute

43 runs in ENA

SRP133277: Comparison of transcriptomes of N2 and fog-2(q71) mutant Caenorhabditis elegans

Haag Lab, Department of Biology, University of Maryland

152 runs in ENA

SRP133403: Neurohormonal signalling via a cytosolic sulfotransferase controls insulin sensitivity of C. elegans

SRP133439: C. elegans total RNA profiles of worms treated with RNAi for different Integrator complex

SRP133671: The Caenorhabditis elegans Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status

SRP134112: Discovery of unique loci that underlie nematode responses to benzimidazoles

Northwestern University

Andersen Lab

40 runs in ENA

SRP134126: Quantify fitness and dissect pleiotropic traits to study adaptation strategy of laboratory domesticated C. elegans strain N2

Georgia Institute of Technology

24 runs in ENA

SRP134390: RNA-seq from animals treated, and non treated, with cisplatin

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Genetic and cellular sensitivity of Caenorhabditis elegans to the chemotherapeutic agent cisplatin. (García-Rodríguez .. Cerón, 2018)

4 runs in ENA

SRP136035: Effects of larval density on gene regulation in C. elegans during routine L1 synchronization

SRP136535: A Protein-Protein Interaction Underlies the Molecular Basis for Substrate Recognition by an Adenosine to Inosine RNA Editing Enzyme

SRP137713: RNA-seq on D5 C. elegans in WT(N2), alg-1(gk214), alg-2(ok304)

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging. (Aalto .. Pasquinelli, 2018)

9 runs in ENA

SRP140674: The memory of environmental chemical exposure in C. elegans is dependent on the Jumonji demethylases jmjd-2 and jmjd-3/utx-1

Allard lab and Yang Lab, Integrative Biology and Physiology, University of California Los Angeles

The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1. (Camacho .. Allard, 2018)

12 runs in ENA

SRP142175: mRNA of fed and starved C. elegans L1 larvae 3 generations following control, short-term dauer or long-term dauer conditions

SRP145566: Changes in piRNA and gene expressions upon temperature shift and bacterial infection

MRC London Institute of Medical Science

29 runs in ENA

SRP146096: Chromatin accessibility dynamics across C. elegans development and ageing [lcap]

SRP146247: Chromatin accessibility dynamics across C. elegans development and ageing [scap]

SRP148595: Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns

Alexander van Oudenaarden, Hubrecht Institute

7 runs in ENA

SRP149073: mRNA-seq of effects of food perception in C. elegans

SRP149465: Whole transcriptome profiling by RNA-sequencing of RNA from N2 and F01D4.5(baf20) C. elegans

SRP150364: RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans

Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China

RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans. (Zhou .. Ma, 2018)

18 runs in ENA

SRP150370: C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, ''red-head worms'') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control)

SRP150372: RNA-seq transcriptome profiling of 1) C. elegans male germlines vs. oogenic germlines, and 2) male germlines, sperm, and F1 offspring germlines when offspring inherited sperm chromatin lacking H3K27me3.

SRP150643: Spatio-temporal m(i)RNA architecture and 3' UTR regulation in the C. elegans germline

Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine

Spatiotemporal m(i)RNA Architecture and 3' UTR Regulation in the C. elegans Germline. (Diag .. Rajewsky, 2018)

9 runs in ENA

SRP150845: Gene expression changes upon depletion of H3K36 methylation by mutating met-1 and RNAi depleting mes-4 in worm L1 larvae

SRP151477: Deciphering the C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

University of Washington

85 runs in ENA

SRP151483: Caenorhabditis elegans strain:Bristol (N2) Raw sequence reads

Princeton University

17 runs in ENA

SRP152334: DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity

Karolinska Institute

49 runs in ENA

SRP154142: WDR-23 and SKN-1 Nrf2 coordinate with the BLI-3 dual oxidase in response to iodide-triggered oxidative stress

SRP154733: Local inhibition of PRC2 activity by histone H3.3K27M drives replication defects through misregulation of the JNK pathway [RNA-seq]

SRP155469: Adult C. elegans neuronal XBP-1s dependent transcriptional changes in the intestine

MRC Laboratory of Molecular Biology

5 runs in ENA

SRP156483: Transcriptome wide change upon mitochondial stress in C.elegans

SRP159636: Polysome profiling and mRNA-seq to quantify translational gene regulation in dietary restricted C. elegans and in a long-lived daf-2:rsks-1 double mutant.

Rollins Lab, MDI Biological Laboratory

48 runs in ENA

SRP164932: Quantitative Analysis of Worms after P. aeruginosa Infection

State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University

6 runs in ENA

SRP165209: RNA sequencing of cell-specific profile of AVK

SRP166156: Comparison of Pseudomonas responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166157: Comparison of R24 responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166158: Comparison of heat responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP171604: Characterization of the genes that were regulated by feeding with CBM 588

SRP172490: Transcriptomic profiling of C. elegans hermaphrodites and feminized (fem-1) individuals following a 2 hour interaction with males or without a male interaction

Stanford University

32 runs in ENA

SRP172974: Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans

STANFORD UNIVERSITY

9 runs in ENA

SRP186354: Transcriptomics-based screening identifies pharmacological inhibition of Hsp90 as a means to defer aging

SRP186435: C. elegans CB4856 genome project using long-read sequencing

Seoul National University

2 runs in ENA

SRP194257: Caenorhabditis elegans pathogenic learning confers multigenerational pathogen avoidance

Princeton University

18 runs in ENA

SRP199407: C. elegans ENDU-2 RNA binding profile

University of Freiburg

11 runs in ENA