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RNASeq Caenorhabditis elegans

Caenorhabditis elegans - public RNASeq studies

Table of Contents

Analysed

SRP010374: Wobble Base-pairing Slows in vivo Translation Elongation in Metazoans

Stanford University

Wobble base-pairing slows in vivo translation elongation in metazoans. (Stadler .. Fire, 2011)

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L1 larva Ce 6 L1 larva Ce organism hermaphrodite N2
L2 larva Ce 2 L2 larva Ce organism hermaphrodite N2
L3 larva Ce 7 L3 larva Ce organism hermaphrodite N2
L4 larva Ce 4 L4 larva Ce organism hermaphrodite N2

SRP015688: C. elegans linker cell transcriptome

California Institute of Technology

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L3 larva Ce, linker cell, male, PS4730 5 L3 larva Ce linker cell male PS4730
L4 larva Ce, linker cell, male, PS4730 9 L4 larva Ce linker cell male PS4730
all stages Ce, organism, hermaphrodite, N2 1 all stages Ce organism hermaphrodite N2
larva Ce, organism, hermaphrodite, N2 1 larva Ce organism hermaphrodite N2

SRP017621: Using RNA-seq to identify transcriptional targets of MAB-5 in C. elegans

University of Kansas

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
LE2544 8 L1 larva Ce organism hermaphrodite LE2544
LE2962 6 L1 larva Ce organism hermaphrodite LE2962
LE2963 6 L1 larva Ce organism hermaphrodite LE2963
LE3037 6 L1 larva Ce organism hermaphrodite LE3037

SRP029448: Spatiotemporal embryonic transcriptomics reveals the evolutionary history of the endoderm germ layer

Yanai, Biology, Technion - Israel Institute of Technology

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. (Hashimshony .. Yanai, 2015)

Design: 78 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
110 min post first-cleavage, AB 2 110 min post first-cleavage AB hermaphrodite N2
110 min post first-cleavage, C 2 110 min post first-cleavage C hermaphrodite N2
110 min post first-cleavage, E 1 110 min post first-cleavage E hermaphrodite N2
110 min post first-cleavage, MS 3 110 min post first-cleavage MS hermaphrodite N2
110 min post first-cleavage, ventral cord blast cell 1 110 min post first-cleavage ventral cord blast cell hermaphrodite N2
120 min post first-cleavage, organism 1 120 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, AB 1 140 min post first-cleavage AB hermaphrodite N2
140 min post first-cleavage, C 1 140 min post first-cleavage C hermaphrodite N2
140 min post first-cleavage, E 3 140 min post first-cleavage E hermaphrodite N2
140 min post first-cleavage, organism 1 140 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, ventral cord blast cell 3 140 min post first-cleavage ventral cord blast cell hermaphrodite N2
150 min post first-cleavage, organism 1 150 min post first-cleavage organism hermaphrodite N2
170 min post first-cleavage, organism 1 170 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, AB 3 180 min post first-cleavage AB hermaphrodite N2
180 min post first-cleavage, C 2 180 min post first-cleavage C hermaphrodite N2
180 min post first-cleavage, E 3 180 min post first-cleavage E hermaphrodite N2
180 min post first-cleavage, MS 2 180 min post first-cleavage MS hermaphrodite N2
180 min post first-cleavage, organism 1 180 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, ventral cord blast cell 2 180 min post first-cleavage ventral cord blast cell hermaphrodite N2
190 min post first-cleavage, organism 1 190 min post first-cleavage organism hermaphrodite N2
2-cell embryo, AB 2 2-cell embryo AB hermaphrodite N2
2-cell embryo, organism 2-cell embryo 2 organism hermaphrodite N2
20 min post first-cleavage, AB 4 20 min post first-cleavage AB hermaphrodite N2
20 min post first-cleavage, EMS 20 min post first-cleavage 3 EMS hermaphrodite N2
20 min post first-cleavage, P2 2 20 min post first-cleavage P2 hermaphrodite N2
200 min post first-cleavage, organism 1 200 min post first-cleavage organism hermaphrodite N2
210 min post first-cleavage, organism 1 210 min post first-cleavage organism hermaphrodite N2
220 min post first-cleavage, organism 2 220 min post first-cleavage organism hermaphrodite N2
240 min post first-cleavage, organism 2 240 min post first-cleavage organism hermaphrodite N2
250 min post first-cleavage, organism 1 250 min post first-cleavage organism hermaphrodite N2
270 min post first-cleavage, AB 270 min post first-cleavage 2 AB hermaphrodite N2
270 min post first-cleavage, C 1 270 min post first-cleavage C hermaphrodite N2
270 min post first-cleavage, E 3 270 min post first-cleavage E hermaphrodite N2
270 min post first-cleavage, MS 270 min post first-cleavage 2 MS hermaphrodite N2
270 min post first-cleavage, ventral cord blast cell 1 270 min post first-cleavage ventral cord blast cell hermaphrodite N2
280 min post first-cleavage, organism 1 280 min post first-cleavage organism hermaphrodite N2
290 min post first-cleavage, organism 1 290 min post first-cleavage organism hermaphrodite N2
30 min post first-cleavage, organism 1 30 min post first-cleavage organism hermaphrodite N2
310 min post first-cleavage, organism 1 310 min post first-cleavage organism hermaphrodite N2
320 min post first-cleavage, organism 1 320 min post first-cleavage organism hermaphrodite N2
340 min post first-cleavage, organism 1 340 min post first-cleavage organism hermaphrodite N2
350 min post first-cleavage, organism 1 350 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, AB 3 360 min post first-cleavage AB hermaphrodite N2
360 min post first-cleavage, E 1 360 min post first-cleavage E hermaphrodite N2
360 min post first-cleavage, MS 1 360 min post first-cleavage MS hermaphrodite N2
360 min post first-cleavage, organism 1 360 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, ventral cord blast cell 1 360 min post first-cleavage ventral cord blast cell hermaphrodite N2
380 min post first-cleavage, organism 1 380 min post first-cleavage organism hermaphrodite N2
390 min post first-cleavage, organism 1 390 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, AB 3 40 min post first-cleavage AB hermaphrodite N2
40 min post first-cleavage, C 1 40 min post first-cleavage C hermaphrodite N2
40 min post first-cleavage, E 3 40 min post first-cleavage E hermaphrodite N2
40 min post first-cleavage, MS 3 40 min post first-cleavage MS hermaphrodite N2
40 min post first-cleavage, organism 1 40 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, ventral cord blast cell 3 40 min post first-cleavage ventral cord blast cell hermaphrodite N2
400 min post first-cleavage, organism 1 400 min post first-cleavage organism hermaphrodite N2
410 min post first-cleavage, organism 1 410 min post first-cleavage organism hermaphrodite N2
420 min post first-cleavage, organism 1 420 min post first-cleavage organism hermaphrodite N2
430 min post first-cleavage, organism 1 430 min post first-cleavage organism hermaphrodite N2
440 min post first-cleavage, organism 1 440 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, AB 3 60 min post first-cleavage AB hermaphrodite N2
60 min post first-cleavage, C 3 60 min post first-cleavage C hermaphrodite N2
60 min post first-cleavage, E 3 60 min post first-cleavage E hermaphrodite N2
60 min post first-cleavage, MS 3 60 min post first-cleavage MS hermaphrodite N2
60 min post first-cleavage, organism 1 60 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, ventral cord blast cell 2 60 min post first-cleavage ventral cord blast cell hermaphrodite N2
70 min post first-cleavage, organism 1 70 min post first-cleavage organism hermaphrodite N2
80 min post first-cleavage, organism 1 80 min post first-cleavage organism hermaphrodite N2
90 min post first-cleavage, AB 2 90 min post first-cleavage AB hermaphrodite N2
90 min post first-cleavage, C 2 90 min post first-cleavage C hermaphrodite N2
90 min post first-cleavage, E 3 90 min post first-cleavage E hermaphrodite N2
90 min post first-cleavage, MS 3 90 min post first-cleavage MS hermaphrodite N2
90 min post first-cleavage, ventral cord blast cell 2 90 min post first-cleavage ventral cord blast cell hermaphrodite N2
comma embryo, AB 2 comma embryo AB hermaphrodite N2
comma embryo, C 2 comma embryo C hermaphrodite N2
comma embryo, E 2 comma embryo E hermaphrodite N2
comma embryo, MS 2 comma embryo MS hermaphrodite N2
comma embryo, ventral cord blast cell 1 comma embryo ventral cord blast cell hermaphrodite N2

SRP045110: Blastomere-specific transcriptome sequencing reveals a determinant of anterior specification in C. elegans

SRP167691: RNA-seq data for: A conserved mito-cytoplasmic translational balance links two longevity pathways

Amsterdam UMC

Design: 6 conditions

Condition num. replicates Molecule subtype Organism part Strain Treatment
monosomal RNA, empty vector 3 monosomal RNA whole organism HT115 empty vector
monosomal RNA, mrps-5 RNAi 3 monosomal RNA whole organism HT115 mrps-5 RNAi
polysomal RNA, empty vector 3 polysomal RNA whole organism HT115 empty vector
polysomal RNA, mrps-5 RNAi 3 polysomal RNA whole organism HT115 mrps-5 RNAi
total RNA, empty vector 3 total RNA whole organism HT115 empty vector
total RNA, mrps-5 RNAi 3 total RNA whole organism HT115 mrps-5 RNAi

SRP171641: Bacterial diet and weak cadmium stress affect the age-specific survival rates of Caenorhabditis elegans and its resistance against severe stressors

Prof. Paul, Institute of Zoophysiology, University of Muenster

Bacterial diet and weak cadmium stress affect the survivability of Caenorhabditis elegans and its resistance to severe stress. (Dölling .. Paul, 2019)

Design: 5 conditions

Condition num. replicates Treatment Developmental stage Strain
0.1 µM CdCl2 3 0.1 µM CdCl2 synchronized adult worms N2 Bristol
10 µM CdCl2 3 10 µM CdCl2 synchronized adult worms N2 Bristol
E. coli strain HT115 (HT115_1) as feed 2 E. coli strain HT115 (HT115_1) as feed synchronized adult worms N2 Bristol
E. coli strain HT115 (HT115_2) as feed 3 E. coli strain HT115 (HT115_2) as feed synchronized adult worms N2 Bristol
E. coli strain OP50 as feed 3 E. coli strain OP50 as feed synchronized adult worms N2 Bristol

SRP184487: Steroids originating from bacterial bile acid degradation affect Caenorhabditis elegans and indicate potential risks for the fauna of manured soils

Prof. Paul, Institute of Zoophysiology, University of Muenster

Design: 4 conditions

Condition num. replicates Strain Developmental stage Organism part Treatment
N2 Bristol variety under control conditions 2 N2 Bristol synchronized adult worms whole organism
N2 Bristol variety under test conditions 2 N2 Bristol synchronized adult worms whole organism 5 µM ADD 7a-HADD
nhr-69 deletion mutant under control conditions 3 nhr-69 deletion mutant synchronized adult worms whole organism
nhr-69 deletion mutant under test conditions 3 nhr-69 deletion mutant synchronized adult worms whole organism 5 µM ADD 7a-HADD

SRP201313: Granulin expression effect on day 1 adults

Neurogenetics, Psychiatry and Neurology, UCLA

Design: 5 conditions

Condition num. replicates Strain Developmental stage
AWK33_pg1_gr1 4 AWK33 pgrn-1(-); granulin 1(+) day 1 adults
AWK33_pg1_gr2 4 AWK43 pgrn-1(-); granulin 2(+) day 1 adults
AWK33_pg1_gr3 4 AWK107 pgrn-1(-); granulin 3(+) day 1 adults
CF3050_pg1 4 CF3050 pgrn-1(-) day 1 adults
WT 4 N2 wildtype day 1 adults

SRP218022: RNA-seq profiling of BAG neurons in C. elegans npr-1 and npr-1;arcp-1 animals

Cell Biology, MRC-LMB

Design: 2 conditions

Condition num. replicates Genotype Strain Cell type Developmental stage
BAG neurons, AX7207 6 arcp-1(db1082); npr-1(ad609); ynIs64[flp-17p::gfp] AX7207 FAC-sorted BAG neurons day 1 adult
BAG neurons, AX7210 6 npr-1(ad609); ynIs64[flp-17p::gfp] AX7210 FAC-sorted BAG neurons day 1 adult

SRP264727: Caenorhabditis elegans AF4/FMR2 family homolog affl-2 regulates heat shock induced gene expression

Sternberg, Biology and Biological Engineering, California Institute of Technology

Design: 4 conditions

Condition num. replicates Genotype Strain Treatment
WT, heat shock 3 wild type N2 heat shock
WT, non-heat shock 3 wild type N2 non-heat-shock
affl-2 mutant, heat shock 3 affl-2(sy975) PS8060 heat shock
affl-2 mutant, non-heat shock 3 affl-2(sy975) PS8060 non-heat-shock

Other

These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!

DRP000898: mRNAseq for the unc-75 mutant

DRP002871: mRNA-seq of N2 and smg-2 to identify NMD isoforms

TOKYO_MEDEN

2 runs in ENA

DRP004388: Transcriptome analysis between wild-type and endu-2 mutant

KONAN

15 runs in ENA

DRP004938: Determination of nutrient-responsive genes in C. elegans

UT_GSPS

27 runs in ENA

DRP004944: Cellular fractionation and RNAseq for the unc-75 mutant

TOKYO_MEDEN

4 runs in ENA

DRP004945: Cellular fractionation and RNAseq for the lst-3 mutant

TOKYO_MEDEN

4 runs in ENA

DRP004947: Cellular fractionation and RNAseq for the wild-type strain

TOKYO_MEDEN

3 runs in ENA

ERP003471: RNA-seq transcript assembly evaluation

European Molecular Biology Laboratory

To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLIDE, Transomics, Trembly, Tromer and Velvet) were evaluated against transcriptome data from human cells and two model organisms.
E-MTAB-1730 in ArrayExpress

3 runs in ENA

ERP010876: MML-1/Mondo complexes regulate HLH-30/TFEB via TOR inhibition to promote longevity in response to signals from the reproductive system

Max Planck Institute for Biology of Ageing

Comprehensive transcriptome analysis of hlh-30, mml-1 and mxl-2 in N2 (wildtype) and glp-1 background.
E-MTAB-3686 in ArrayExpress

32 runs in ENA

ERP013714: Functional sequestration of MOAG-2/LIR-3 by polyglutamine expansion proteins

European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen

Transcriptome profiling of Lir3 C.elegans mutants. Larval stage L4 worms were used for RNA isolation from N2 (Bristol), Q40 (polyglutamine model) genetic background; Lir3 and wiltype controls. Experiments were done in triplicates using ribosomal RNA depletion. Libraries were sequenced with 50bp reads on Illumina HiSeq2500 platform
E-MTAB-4172 in ArrayExpress

27 runs in ENA

ERP014488: Differential gene analysis to identify genes expressed in AMsh glia and genes that are pros-1-dependent in C. elegans

THE ROCKEFELLER UNIVERSITY

AMsh glia were isolated from C. elegans L4 larvae by FACS, based on expression of a dsRed marker under control of the AMsh glia-specific marker F16F9.3. From control animals, dsRed-positive and dsRed-negative samples were compared to identify AMsh glia-enriched genes. To identify glial targets of the transcription factor pros-1/Prospero, dsRed-positive samples from control and pros-1(RNAi) animals were compared.

10 runs in ENA

ERP015607: RNA-seq analysis of C. elegans CPEB homolog mutants.

Institute of Molecular Life Sciences, University of Zurich

Comparative transcriptomics study between C. elegans wild-type N2 and CPEB homolog mutants: fog-1, cpb-2, and cpb-3.
E-MTAB-4720 in ArrayExpress

27 runs in ENA

ERP016265: Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans

Department of Biochemistry and Molecular Biology University of Southern Denmark

RNA-seq of C.elegans strain N2 (wt) with and without sfa-1 RNAi at adult day 3 and day 15, C. elegans strain DA1116 (eat-2(ad1116)) with and without sfa-1 RNAi at adult day 3, day 15, and day 27, C. elegans strain SS104 (glp-4(bn2)) with and without hrp-2 RNAi at adult day 1, and HeLa cells with and without SF1 siRNA.
E-MTAB-4866 in ArrayExpress

42 runs in ENA

ERP016404: RNA-Seq of Caenorhabditis elegans Mi2-depleted embryos at 24- and 100-cell stages

University of Fribourg Biology department Zoology institute

We aimed at identifying the transcriptomes of single and double mutants of the two C.elegans Mi2 homologues, let-418 and chd-3. Embryos depleted for one or both genes were manually sorted and synchronised at the 24- and 100-cell stages, and their transcriptome compared to control embryos in order to identify de-regulated target genes, and determine whether the two Mi2 proteins are functionally redundant.
E-MTAB-4714 in ArrayExpress

23 runs in ENA

ERP016462: Small RNA and total RNA sequencing of C. elegans with mutations in the hrde-1 and emb-4 genes

Gurdon Institute

E-MTAB-4877 in ArrayExpress

12 runs in ENA

ERP016513: Analysis of post-transcriptional RNA modifications in Caenorhabditis elegans under stress

Gurdon Institute

Syncronised population of L1 animals were grown until young adult stage. For heat stress, animals were heat-shocked at 37℃ for 4hrs with food. For starvation experiments, young adult stage animals were plated on either food plates for control or on empty plates for starvation at 20℃ for 4hrs.
E-MTAB-4940 in ArrayExpress

9 runs in ENA

ERP110557: RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans

KU Leuven, Centre of Microbial and Plant Genetics (CMPG)

This study uses total and polysomal RNA-sequencing to show that the translational efficiencies of specific mRNAs change depending on the mitochondrial activity in longer-lived C. elegans.
E-MTAB-7166 in ArrayExpress

49 runs in ENA

ERP111311: RNAseq of C. elegans cultured on metformin sensitive and resistant E. coli strains with and without 50mM metformin treatment

UNIVERSITY COLLEGE LONDON

E-MTAB-7272 in ArrayExpress

16 runs in ENA

ERP111974: RNA-seq analysis of C. elegans mina-1 mutants

University Children’s Hospital Basel, University of Basel, Spitalstrasse 33, 4056 Basel, Switzerland

Comparative transcriptomics study between C. elegans wild-type N2 and mina-1 mutants.
E-MTAB-7389 in ArrayExpress

6 runs in ENA

ERP112306: CLIP-seq analysis of C.elegans MINA-1::GFP transgenic animals.

Institute of Pharmaceutical Sciences, ETH Zurich

Analysis to determine which mRNAs are specifically associated with MINA-1 protein.
E-MTAB-7420 in ArrayExpress

1 run in ENA

ERP113650: Differential gene analysis to identify genes expressed in CEPsh glia of C. elegans

THE ROCKEFELLER UNIVERSITY

CEPsh glia were isolated from C. elegans mix larvae population by FACS, based on expression of a GFP marker under control of the CEPsh glia-specific marker hlh-17. All other cells, which are not expressing GFP, were collected separately for control. RNA reads from GFP-positive and GFP-negative samples were compared to identify CEPsh glia-enriched genes.

6 runs in ENA

ERP115535: dsRNA uptake in Caenorhabditis elegans

GURDON INSTITUTE

long RNA sequencing and primary and secondary small RNA sequencing of Caenorhabditis wild type and dsRNA uptake mutants

24 runs in ENA

ERP115742: RNA-seq of C. elegans adults and embryos exposed to P. vranovensis, P. aeruginosa, P. luminescens or wdr-23 mutant embryos.

Centre for Trophoblast Research

30 runs in ENA

ERP116498: RNAseq of young adult C. elegans animals fed on three different bacterial diets, E. coli OP50, B. subtilis PXN21 and a mixture of both

School of Biological Sciences, University of Edinburgh

To uncover the host response pathways that are modified by a B. subtilis diet and that may provide the protective effect against α-synuclein aggregation, we performed comparative global transcriptomics analysis using next generation RNA sequencing (RNA-seq). We compared young adult animals fed on three different diets, E. coli OP50 and B. subtilis PXN21 lawns, consisting of both spores and vegetative cells, and a mixture of both bacteria.
E-MTAB-8164 in ArrayExpress

9 runs in ENA

ERP117708: In vivo assessment of ROS production and oxidative stress effects induced by chronic exposure to gamma radiation in C. elegans

Centre for Integrative Genetics (CIGENE), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), 1432, As, Norway

E-MTAB-8284 in ArrayExpress

12 runs in ENA

ERP119575: Transcriptomic effect of extracellular protein aggregation regulators in C. elegans

MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

10 runs in ENA

SRP000244: Whole-genome sequencing and variant discovery in Caenorhabditis elegans by Illumina sequencing

SRP000401: Deep sequencing of the Caenorhabditis elegans transcriptome using RNA isolated from various developmental stages under various experimental conditions RW0001

modENCODE

The goal of this study, started as a part of the modENCODE project, is to detect and characterize previously unannotated transcripts of the C. elegans genome.
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. (Hillier .. Waterston, 2009)

540 runs in ENA

SRP001010: A high resolution transcriptome map for both wild-type and NMD defective C. elegans

SRP003492: Caenorhabditis angaria genome sequencing project

SRP003783: Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome

SRP003896: Formation, regulation and evolution of 3'' UTRs in Caenorhabditis elegans

SRP008241: Analysis of Caenorhabditis elegans intestinal gene expression and alternative polyadenylation using fluorescence-activated nuclei sorting (FANS) and 3' end deep sequencing (3'end-seq)

SRP009274: In vivo and transcriptome-wide identification of RNA-binding protein target sites [RNA-Seq]

SRP010646: Caenorhabditis elegans strain:N2, adr-1, adr-2, adr-1;adr-2 Transcriptome or Gene expression

SRP011038: Impaired Insulin-/IGF1-Signaling Extends Life Span by Promoting Mitochondrial L-Proline Catabolism to Induce a Transient ROS-Signal

SRP012065: Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans

CAS Key Laboratory of RNA Biology, Institute of Biophysics, Chinsese Academy of Sciences

Identification of intermediate-size non-coding RNAs involved in the UV-induced DNA damage response in C. elegans. (Li .. Chen, 2012)

3 runs in ENA

SRP014427: Caenorhabditis elegans ribosome profiling of miRNA targets

Stanford University

6 runs in ENA

SRP014544: RNA-seq quantification of expression changes upon unc-62 knockdown in adult Caenorhabditis elegans.

SRP014581: Caenorhabditis elegans sperm mRNAome sequencing

Institute of Biophysics

1 run in ENA

SRP014826: C. elegans piRNAs are processed from capped-small RNAs transcribed at promoters throughout the genome

Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School

CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. (Gu .. Mello, 2012)

1 run in ENA

SRP015332: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes

Raetsch Lab, Computational Biology, Memorial Sloan Kettering Cancer Center

Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. (Smith .. Rätsch, 2012)

4 runs in ENA

SRP015918: Influence of p38 MAPK (PMK-1) on the heat stress response of C. elegans

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

6 runs in ENA

SRP017438: Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq]

SRP017486: The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel regulatory architecture

SRP017908: DAF-16/FOXO uses SWI/SNF to regulate transcription.

Massachusetts General Hospital

8 runs in ENA

SRP018033: NO-mediated transcriptional response in C. elegans

SRP018867: Next generation sequencing facilitates quantitative analysis of Caenorhabditis elegans N2 wild type, emr-1(gk119), lem-2(tm1582) and emr-1(RNAi) lem-2(tm1582) transcriptomes.

SRP020357: Genome-wide distribution of the three condensin complexes in C. elegans

SRP021083: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of rotenone at 4 different time points

Leibniz Institute for Age Research - Fritz Lipmann Institute

22 runs in ENA

SRP021462: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of arsenite

Leibniz Institute for Age Research - Fritz Lipmann Institute

Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension. (Schmeisser .. Ristow, 2013)

4 runs in ENA

SRP021487: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence of 2-deoxy-D-glucose (DOG) at 4 different time points

SRP023261: Caenorhabditis elegans Transcriptome or Gene expression

The Genome Institute

6 runs in ENA

SRP023543: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

institute of biophysics

2 runs in ENA

SRP027592: Dampening of expression oscillations by synchronous regulation of a microRNA and its target

SRP028602: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of 1-methylnicotinamide (MNA) and nicotinic acid (NA)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. (Schmeisser .. Ristow, 2013)

9 runs in ENA

SRP028863: Profiling of RNA editing in Caenorhabditis elegans

Center of Bioinformatics, Peking University

17 runs in ENA

SRP028875: Global effects of the CSR-1 RNA interference pathway on transcriptional landscape

Alla Grishok, Biochemistry and Molecular Biophysics, Columbia University

Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape. (Cecere .. Grishok, 2014)

6 runs in ENA

SRP030526: Caenorhabditis elegans Transcriptome or Gene expression

SRP031831: The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome

SRP033410: Extensive oscillatory gene expression during C. elegans larval development [RNA-seq for polyA enriched mRNAs]

SRP033412: Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]

SRP034522: Conservation of mRNA and protein expression during development of C. elegans

Max Planck Institute of Immunobiology and Epigenetics

Conservation of mRNA and protein expression during development of C. elegans. (Grün .. Rajewsky, 2014)

6 runs in ENA

SRP034667: Male and Female DNA and RNA sequencing in several nematode species

SRP035281: A Genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis

SRP035507: Caenorhabditis elegans transcriptome, in response to albendazole

SRP036048: mRNAs that co-purify with OMA-1 in the C. elegans germline (sequencing)

SRP037555: RNA-seq of C.elegans and M.musculus in the presence and absence of D-Glucosamine (GlcN)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

D-Glucosamine supplementation extends life span of nematodes and of ageing mice. (Weimer .. Ristow, 2014)

12 runs in ENA

SRP038704: RNA-seq analysis of WT and blmp-1(tm548) mutant L3 larvae

SRP038903: Caenorhabditis elegans ALA neuron transcriptome (wild-type, mid-L4 larval stage)

Cornell University

2 runs in ENA

SRP038923: Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL RNA-Seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP040269: mRNA profile in DR-related mutants

SRP040623: The expression mRNAs after prg-1 mutation

Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences

The influences of PRG-1 on the expression of small RNAs and mRNAs. (Wang .. Huang, 2014)

4 runs in ENA

SRP041095: Caenorhabditis elegans Transcriptome or Gene expression

SRP041461: A new dataset of spermatogenic vs oogenic transcriptomes in the nematode C. elegans

SRP041708: Paternal RNA contributions in the C. elegans zygote

Max Planck Institute of Immunobiology and Epigenetics

Paternal RNA contributions in the Caenorhabditis elegans zygote. (Stoeckius .. Rajewsky, 2014)

15 runs in ENA

SRP042044: Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes

Laboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School

Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. (Visvikis .. Irazoqui, 2014)

8 runs in ENA

SRP042619: Global characterization of the oocyte-to-embryo transition in C. elegans uncovers a novel mRNA turnover mechanism

SRP043683: Neuronal CRTC-1 governs systemic mitochondrial metabolism and lifespan via a catecholamine signal

SRP043990: The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms

SRP044752: The role of SPK-1 in alternative splicing regulation in C. elegans

SRP044765: Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [RNA-Seq]

SRP044802: Caenorhabditis elegans PAT-Seq of Intestine, pharynx and body muscle transcriptomes

Arizona State University

4 runs in ENA

SRP045231: Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1. (Nakad .. Schulenburg, 2016)

56 runs in ENA

SRP045499: Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans [RNA-Seq]

Michael Hengartner, Institute of Molecular Life Sciences, University of Zurich

Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans. (Subasic .. Hengartner, 2015)

12 runs in ENA

SRP045715: RNA-seq of C.elegans treated with bcat-1 RNAi and controls

Leibniz Institute for Age Research - Fritz Lipmann Institute

Branched-chain amino acid catabolism is a conserved regulator of physiological ageing. (Mansfeld .. Ristow, 2015)

6 runs in ENA

SRP045742: Caenorhabditis elegans strain:N2, rde-4::unc-69, hrde-1 Transcriptome or Gene expression

SRP045778: Caenorhabditis elegans high resolution developmental transcriptomic time-course

Yanai, Biology, Technion - Israel Institute of Technology

The mid-developmental transition and the evolution of animal body plans. (Levin .. Yanai, 2016)

86 runs in ENA

SRP047293: Differential gene expression in ahr-1 mutants compared to wild-type C. elegans

SRP047336: TDP-1, the C. elegans ortholog of TDP-43, limits the accumulation of double stranded RNA

Link Lab, Integrative Physiology, University of Colorado Boulder

TDP-1, the Caenorhabditis elegans ortholog of TDP-43, limits the accumulation of double-stranded RNA. (Saldi .. Link, 2014)

21 runs in ENA

SRP047464: The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.

Jay Hesselberth, Biochemistry and Molecular Gentetics, University of Colorado School of Medicine

The RtcB RNA ligase is an essential component of the metazoan unfolded protein response. (Kosmaczewski .. Hammarlund, 2014)

4 runs in ENA

SRP049280: Tri-methylation of lysine 36 on H3 restricts gene expression variation during aging and impacts lifespan

Siu Sylvia Lee, Molecular Biology and Genetics, Cornell University

Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span. (Pu .. Lee, 2015)

20 runs in ENA

SRP049395: The DREAM complex promotes gene body deposition of H2A.Z for target repression

Ahringer Lab, The Gurdon Institute, University of Cambridge

The DREAM complex promotes gene body H2A.Z for target repression. (Latorre .. Ahringer, 2015)

6 runs in ENA

SRP049412: Defining soma-specific/enriched and germline-specific/enriched transcripts

SRP049413: Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)

SRP049596: RNA-seq analysis of germline stem cell removal and loss of SKN-1 in C. elegans

SRP050039: A variety of Dicer substrates in human and C. elegans (CEL RNA-seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP050116: Suppression of Transcriptional Drift Extends C. elegans Lifespan by Postponing the Onset of Mortality

SRP050505: Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

SRP051404: Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans towards pathogenic Bacillus thuringiensis

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis. (Yang .. Schulenburg, 2015)

24 runs in ENA

SRP051702: mRNA profiling of wildtype, germline depleted, NMD mutant C. elegans whole worms and wildtype dissected gonads

Alan Zahler, MCD Biology, University of California-Santa Cruz

Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans. (Ragle .. Zahler, 2015)

5 runs in ENA

SRP052923: Transcriptomic analysis of germline tumor in fasted C. elegans

Developmental Cell Biology, Biochemistry, Buchmann Institute for Molecular Life Sciences

Autophagy and modular restructuring of metabolism control germline tumor differentiation and proliferation in C. elegans. (Gomes .. Pohl, 2016)

5 runs in ENA

SRP053371: H3K36 methylation promotes longevity by enhancing transcriptional fidelity [Worm RNA-Seq]

Zaret Lab, Cell & Developmental Biology, The University of Pennsylvania

H3K36 methylation promotes longevity by enhancing transcriptional fidelity. (Sen .. Berger, 2015)

4 runs in ENA

SRP056286: Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [RNA-Seq]

SRP056647: Optimization of codon translation rates via tRNA modifications maintains proteome integrity

Max Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine

Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity. (Nedialkova .. Leidel, 2015)

8 runs in ENA

SRP057263: CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline

SRP057272: Endogenous DAF-16 genome-wide recruitment under low Insulin signalling condition in Caenorhabditis elegans

SRP057305: Widespread cytoplasmic polyadenylation programs asymmetry in the germline and early embryo

23 runs in ENA

SRP057713: RNA sequencing of C. elegans lsm-1(tm3585) mutants at L3 stage

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Cytoplasmic LSM-1 protein regulates stress responses through the insulin/IGF-1 signaling pathway in Caenorhabditis elegans. (Cornes .. Cerón, 2015)

2 runs in ENA

SRP057881: Transcriptome analysis of N2 and flp-6 Caenorhabditis elegans at 25 °C

SRP058023: Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

University of California, Irvine

8 runs in ENA

SRP058358: RNA-seq profile of two daf-2 (e1370);daf-12(m20) samples

2 runs in ENA

SRP058746: Transcriptional profile of C. elegans following RNAi of elt-2 [L4 stage]

SRP058747: Transcriptional profile of C. elegans following over-expression of elt-2 [L4 stage & Day 13]

SRP058751: Transcriptional profile of C. elegans following RNAi of elt-2 [L1 stage]

SRP059285: Tissue homogeneity requires inhibition of unequal gene silencing during development

Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park

Tissue homogeneity requires inhibition of unequal gene silencing during development. (Le .. Jose, 2016)

1 run in ENA

SRP059743: RNA sequencing analysis of DAF-16 target gene expression when math-33 function is genetically inactivated

SRP060311: Gene expression in four C.elegans natural isolates

University of Toronto

4 runs in ENA

SRP060554: Caenorhabditis elegans ALT transcriptome

Seoul National University

4 runs in ENA

SRP061927: Caenorhabditis elegans intestinal transcriptome

Max Planck Institute for Developmental Biology

2 runs in ENA

SRP062026: Defining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm

Biochemistry and Molecular Biology, Colorado State University

The function and regulation of the GATA factor ELT-2 in the C. elegans endoderm. (Wiesenfahrt .. McGhee, 2016)

2 runs in ENA

SRP062096: Transcriptome analysis of sexual dimorphism in the somatic gonadal precursor cells of Caenorhabditis elegans

SRP062670: Deep sequencing of poly(A)-selected RNAs from whole nematode C. elegans during aging

SRP062881: daf-16/FoxO isoform-specific deletion mutants

SRP063616: RNA-seq from animals treated with RNAi against prp-8, prp-6, and prp-31

SRP064324: Osmosensory neurons modulate hypertonic stress resistance in C. elegans by controlling protein damage in non-neuronal cells

SRP064516: Translation Readthrough Mitigation

SRP064859: RNA-seq for monitoring expression changes in absence of chromatin anchoring

SRP066258: Caenorhabditis elegans Transcriptome or Gene expression

Princeton University

13 runs in ENA

SRP066352: A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions

Dept. of Cellular & Molecular Medicine, University of California San Diego, Ludwig Institute for Cancer Research, San Diego Branch

A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions. (Gerson-Gurwitz .. Desai, 2016)

68 runs in ENA

SRP066376: Whole RNA sequencing to identify targets of ets-4 that are responsible for rege-1 (C30F12.1) phenotype

SRP066378: Whole RNA sequencing to identify targets of the RNase domain protein encoded by rege-1 (C30F12.1)

SRP066585: Caenorhabditis elegans strain:Bristol Transcriptome or Gene expression

Monash University

4 runs in ENA

SRP066993: RNA-seq from L4 animals treated with RNAi against gfp (control), ham-3, and swsn-2.2

SRP067921: Ingested double-stranded RNA engages multiple silencing mechanisms in C. elegans

Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park

2 runs in ENA

SRP067973: Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis

SRP068357: Nuclear Envelope Retention of LINC Complexes Is Promoted by SUN-1 Oligomerization in the Caenorhabditis elegans Germ Line

SRP068497: mRNA sequencing in cde-1 mutants versus WT C. elegans infected by the Orsay virus

Gurdon Institute, University of Cambridge

6 runs in ENA

SRP068564: Transcriptome profiling of sterile daf-2; mes-1 double vs. mes-1 single mutants

SRP069865: Caenorhabditis elegans strain:Bristol N2 Raw sequence reads

University of Massachusetts Medical School

12 runs in ENA

SRP069872: Uncoupling X chromosome number from sex determination separates contribution of sex and X dose to sex-biased gene expression in C. elegans

SRP070204: TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-Autonomously in Caenorhabditis elegans

SRP070753: Mitochondrial stress induces chromatin reorganization to promote longevity and UPRmt

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPR(mt). (Tian .. Dillin, 2016)

18 runs in ENA

SRP071138: HLH-30/TFEB-mediated autophagy functions in a cell-autonomous manner for epithelium intrinsic cellular defense against bacterial pore-forming toxin in C. elegans

National Cheng Kung University

4 runs in ENA

SRP071287: Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity. (Merkwirth .. Dillin, 2016)

15 runs in ENA

SRP071967: dsRNAs expressed in C. elegans development

SRP072091: Transcriptional profile of C. elegans fed E. coli (OP50) and B. subtilis (PY79)

SRP072327: Anchoring of Heterochromatin to the Nuclear Lamina Reinforces Dosage Compensation-Mediated Gene Repression

SRP072711: Caenorhabditis elegans Periodic An/Tn Clusters

Stanford University

5 runs in ENA

SRP072746: Localization of RNAPII and 3’ end formation factor CstF subunits on C. elegans genes and operons [RNA-seq]

CU Boulder

8 runs in ENA

SRP072954: XRN2 Autoregulation and Control of Polycistronic Gene Expression in Caenorhabditis elegans

SRP073117: Post-transcriptional regulation by the let-7 microRNA and the TRIM-NHL protein LIN41 [RNA-seq]

SRP074175: mRNA expression profile of dop-1 mutants to wild- type animals during adulthood (L4+48 hours) using RNA-seq

Room 33, Department of Genetics, Waksman Institute, Rutgers The State University of New Jersey

Dopamine signaling promotes the xenobiotic stress response and protein homeostasis. (Joshi .. Rongo, 2016)

6 runs in ENA

SRP075274: RNA-seq analysis in C. elegans larval development and heat shock

SRP075276: RNA-seq analysis of hsf-1 mutant in C. elegans larval development

SRP075489: Germline- and soma-specific heritable epigenetic silencing at an endogenous locus (RNA-Seq)

Craig P. Hunter, Molecular and Cellular Biology, Harvard University

Stable Heritable Germline Silencing Directs Somatic Silencing at an Endogenous Locus. (Minkina .. Hunter, 2017)

8 runs in ENA

SRP075984: Caenorhabditis elegans strain:N2 Raw sequence reads

Arizona State University

10 runs in ENA

SRP076298: A-to-I RNA editing promotes developmental-stage specific gene and lncRNA expression

SRP076404: Expression profiles in Caenorhabditis elegans mutants lacking an intestinally expressed microRNA mir-60 that promote adaptive response against chronic oxidative stress

The Laboratory of Ageing, Centenary Institute, The University of Sydney

An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans. (Kato .. Cheng, 2016)

14 runs in ENA

SRP076415: Developmental transcriptomes of the two sexes in Caenorhabditis elegans during sexual maturation

Scott Emmons lab, Genetics, Albert Einstein College of Medicine

Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans. (Kim .. Emmons, 2016)

10 runs in ENA

SRP076810: Transgenerational transmission of environmental information in C. elegans

SRP076816: GEO accession GSE83523 is currently private and is scheduled to be released on Jul 05, 2018.

Technion

2022 runs in ENA

SRP077649: Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

SRP078295: The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

University of South Florida

8 runs in ENA

SRP078331: An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males

SRP078368: C. elegans polyA selected RNA-seq raw sequencing reads

University of California, San Diego

6 runs in ENA

SRP078939: Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase

SRP080806: Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but required for RNA:DNA hybrid-associated repeat stability

Friedrich Miescher Institute for Biomedical Research

18 runs in ENA

SRP081065: Caenorhabditis elegans Transcriptome or Gene expression

Kunming Institute of Botany, Chinese Academy of Sciences

6 runs in ENA

SRP081238: Comparison of transcriptomes of sig-7 (RNAi) vs WT C. elegans early stage embryos by RNA-seq

MCD Biology, UC Santa Cruz

4 runs in ENA

SRP082984: LIN-28 balances longevity and germline stem cell number in C. elegans through let-7/AKT/DAF-16 axis

Jing-Dong J. Han's Lab, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

LIN-28 balances longevity and germline stem cell number in Caenorhabditis elegans through let-7/AKT/DAF-16 axis. (Wang .. Han, 2017)

4 runs in ENA

SRP084244: Comparative transcriptomics of Steinernema and Caenorhabditis single embryos reveals gene expression divergence during early embryogenesis

SRP086954: Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes SKN-1, IRE-1, and XBP-1

SRP089617: Caenorhabditis elegans Transcriptome or Gene expression

National Institute of Immunology

28 runs in ENA

SRP089981: Transcriptomic profiling of germlines and intestines of C. elegans deficient in the COMPASS H3K4me3 methyltransferase complex

SRP090119: mRNA Next Generation Sequencing of long-lived C. elegans mutants lacking the replication-independent histone variant H3.3

SRP090696: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress [RNA-seq]

SRP090699: Developmental constraints shape the evolution of the nematode mid-developmental transition

Technion

161 runs in ENA

SRP090988: Cooperation between a hierarchical set of recruitment sites specifically targets the C. elegans dosage compensation complex to the X chromosomes.

Ercan, Biology, New York University

6 runs in ENA

SRP092256: Gene expression changes in dauer defective strains

SRP093250: NHR-14 loss of function couples intestinal iron uptake with innate immunity in C. elegans through PQM-1 signaling

Leibold lab, Molecular Medicine, University of Utah

6 runs in ENA

SRP093385: morc-1 regulates transgenerational heterochromatin maintenance at nuclear RNAi targets

SRP094762: mRNA-seq comparison of L1 larvae experiencing osmotic and starvation-induced arrest

SRP094827: RNA-seq of N2 and lin-45(n2018) mutant C.elegans responses to osmotic stress

SRP095453: Transcriptome profiling of P-granule-depleted or P-granule mutant gonads versus control gonads over time

SRP095467: L4, day 1, day 7 and day 10 old total RNA-Seq from Caenorhabditis elegans

University of Nevada, Reno

12 runs in ENA

SRP095564: LSM2-8 and XRN-2 contribute to the silencing of H3K27me3 marked genes through targeted RNA decay I

Friedrich Miescher Institute

32 runs in ENA

SRP095671: RNA-Seq analysis of dietary restriction and loss of SEK-1 in C. elegans

Keith Blackwell, Islet Cell and Regenerative Biology, Joslin Diabetes Center

12 runs in ENA

SRP095719: The C. elegans transcriptome is regulated by environmental and developmental history

Life Sciences Complex, Biology, Syracuse University

16 runs in ENA

SRP095954: JMJD5/PHF8 regulates H3K36me2 and it is required for late steps of homologous recombination and genome integrity

SRP096640: Caenorhabditis elegans LITE-Seq germline 3''UTR sequencing

New York University

28 runs in ENA

SRP096828: Differential gene expression between feminized C. elegans male and female germlines

Ercan, Biology, New York University

12 runs in ENA

SRP096897: Activation of DAF-16/FOXO by reactive oxygen species promotes longevity in long- lived mitochondrial mutants in C. elegans

Center For Neurodegenerative Science, Van Andel Research Institute

51 runs in ENA

SRP097095: Gene changes over aging in the C.elegans rrf-3(pk1426) mutant

Molecular Epigenetics, Institute of molecular Biology

18 runs in ENA

SRP097655: Transcriptomics of a diet gene pair in C. elegans

National Institute of Immunology

flr-4 gene (wormbase)

5 runs in ENA

SRP097783: Analysis of nonsense-mediated mRNA decay in daf-2 mutants

SRP098734: Genome-wide expression analysis of Caenorhabditis elegans AXIN mutant

SRP098791: The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans

SRP098805: A Highly Conserved GAD-1 Is Required for Pre-mRNA Splicing and Transcription Elongation by Forming Spliceosome with NineTeen Complex

Hong Kong Baptist University

2 runs in ENA

SRP099636: Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT)

SRP100172: Impaired DNA replication derepresses chromatin and generates a transgenerationally inherited epigenetic memory

SRP100571: Role of STA-1 and SID-3 upon Orsay virus infection in C. elegans (RNA-Seq)

Gurdon Institute, University of Cambridge

36 runs in ENA

SRP100601: RNA-sequencing of C.elegans isp-1 mutant and superoxide dismutase-isp-1 double mutants

SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes

Washington University in St. Louis

16 runs in ENA

SRP101574: RNAseq of C. elegans N2 raised on LB- and M9-cultured E. coli MG1655

Baylor College of Medicine

6 runs in ENA

SRP103653: Caenorhabditis elegans RNA-seq project

Peking University School of Stomatology

4 runs in ENA

SRP103917: Two distinct transcription termination modes dictated by promoters

SRP104170: The role of the TGF-ß/DBL-1 pathway in shaping the C. elegans gut microbiota

UC Berkeley

12 runs in ENA

SRP104288: Impaired locomotor behavior of C. elegans neuroligin mutants is dependent of the catechol-O-methyltransferase COMT-4

SRP105206: A Chinese herbal formula, Gengnianchun, ameliorates ß-amyloid peptide toxicity in a Caenorhabditis elegans model of Alzheimer's disease

SRP106459: mRNA-seq comparison of N2 and tps1;tps2 double mutants with and without trehalose supplementation

SRP106501: Network modeling reveals genetic interactions that influence C. elegans defense against infection

Harvard University

8 runs in ENA

SRP106518: Global transcriptional responce in C.elegans on a high glucose diet

Biochemistry, NYU School of Medicine

5 runs in ENA

SRP106801: RNA binding proteins in C. elegans

Harvard University

8 runs in ENA

SRP106869: Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex

Ohler, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. (Kolundzic .. Tursun, 2018)

15 runs in ENA

SRP106988: The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

UCSD

6 runs in ENA

SRP107232: Global proteomic- and transcriptomic analyses of starvation responses reveal a central role for lipoprotein metabolism in acute starvation survival in C. elegans

SRP107241: ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline

SRP108932: The rules of piRNA targeting reveals resistance of endogenous genes to piRNA silencing in C. elegans

University of Chicago

1 run in ENA

SRP109222: RNA-seq of C. elegans worms treated with RNAi toward daf-2 or cav-1 or left untreated (EV) to compare gene expression profiles

The Hebrew University of Jerusalem

6 runs in ENA

SRP110292: Global Gene Expression profile in homozygous frk-1(ok760) mutants versus wildtype in the nematode, Caenorhabditis elegans using RNA Seq

Cold Spring Harbor Laboratory

RNA-Seq for the Next Generation Project

6 runs in ENA

SRP110515: Beyond the polymerase-gamma theory: Respiratory chain inhibition and production of ROS as modes of NRTI induced mitochondrial toxicity

SRP110703: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

SRP110754: Chromatin reprogramming in primordial germ cells requires Nanos-dependent down-regulation of the synMuvB transcription factor LIN-15B

SRP110800: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

Cornell University Lee lab

8 runs in ENA

SRP111062: H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility [RNA-seq]

SRP111138: The C. elegans ortholog of TDP-43 regulates the chromatin localization of the heterochromatin protein 1 homolog, HPL-2

SRP111346: Global characterization of direct substrates of nonsense-mediated mRNA decay in Caenorhabditis elegans

SRP112567: Variations in diet type and temperature significantly affect the transcriptional profile of C. elegans

SRP112904: Transcriptomic analysis of wild-type and lin-22 mutants in C.elegans

SRP112905: Transcriptomic analysis of control and Myzocytiopsis humicola-infected C. elegans

Michalis Barkoulas's lab, Life Sciences, Imperial College London

48 runs in ENA

SRP113021: RNA-seq of C.elegans sma-4(rax3), sma-2(rax5) and wild-type strains

Baylor College of Medicine

9 runs in ENA

SRP113614: Indole from commensal bacteria impact the aging transcriptome of C. elegans

Kalman Lab, Pathology & Laboratory Medicine, Emory University

Indoles from commensal bacteria extend healthspan. (Sonowal .. Kalman, 2017)

11 runs in ENA

SRP114957: RNAseq of FACS-sorted C.elegans neurons from wildtype and thoc-5(wy822) mutant animals.

SRP115391: Caenorhabditis elegans Raw sequence reads NHL-2

University of Massachusetts Medical School

12 runs in ENA

SRP115483: Two evolutionary developmental strategies for miRNA gene regulation in animal embryogenesis [CE_RNA-seq]

Itai Yanai, Biochemistry and Molecular Pharmacology, New York University, School of Medicine

Bimodal evolutionary developmental miRNA program in animal embryogenesis. (Avital .. Yanai, 2017)

24 runs in ENA

SRP116980: Dauer and reproductive development RNA-seq

California Institute of Technology

12 runs in ENA

SRP117631: Effect of liquid cultivations on N2 and AB1 strains of C. elegans

SRP117954: Evolution of piRNAs in nematodes

Peter Sarkies lab - MRC London Institute of Medical Sciences/Imperial College London

2 runs in ENA

SRP119100: Transcriptomic response to changes in C. elegans diet

BioCI

4 runs in ENA

SRP119250: RNA-Seq of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

3 runs in ENA

SRP119251: Poly(A) Tail Length of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

2 runs in ENA

SRP119353: The combinatorial control of alternative splicing in C. elegans

University of Toronto

6 runs in ENA

SRP120036: The effects of mitochondrial- and histone stress on the C. elegans transcriptome

SRP123154: An Elongin-Cullin-SOCS-box Complex Regulates Stress-induced Serotonergic Neuromodulation Stress-induced Serotonergic Neuromodulation

SRP124524: Transcriptome analysis of C. elegans embryos lacking ADARs and the 26G pathway

SRP124969: Differential expression of H3.3 genes and their role in modulating temperature stress response in Caenorhabditis elegans

SRP125869: Study of an allelic series using transcriptomic phenotypes

Caltech

22 runs in ENA

SRP126163: Role of SKN-1 in dpy-7 and osmotic gene induction

SRP126312: NHR-49/HNF4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting

Taubert Lab, Medical genetics, Centre for Molecular Medicine and Therapeutics, UBC

32 runs in ENA

SRP126629: The zinc finger transcription factor PQM-1 is a mediator of transcellular chaperone signalling and novel regulator of proteostasis in C. elegans

Faculty of Biological Sciences, School of Molecular and Cell Biology, Garstang 8.53c, UNIVERSITY OF LEEDS

6 runs in ENA

SRP127019: Drug synergy slows ageing and improves healthspan through IGF and SREBP lipid signaling

Nematode Ageing Lab, Science/ Biochemistry, Yale-NUS College / NUS

53 runs in ENA

SRP127051: Hypoxia-inducible factor cell non-autonomously regulates C. elegans stress responses and behavior via a nuclear receptor

SRP129557: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

University of California San Francisco

12 runs in ENA

SRP130946: SET-9 and SET-26 are H3K4me3 readers and play critical roles in germline development and longevity

SRP131397: Caenorhabditis elegans Raw sequence reads

University of Massachusetts Medical School

5 runs in ENA

SRP131463: Sequencing of Caenorhabditis elegans wildtype strain (N2) treated with T25B9.1 RNAi for 5 days after L4 larvae stage.

SRP132468: Ribotagging on NSM neurons in C. elegans

Flavell, Brain and Cognitive Sciences, MIT

8 runs in ENA

SRP133204: Transcriptome of clec-4 for the nematode Caenorhabditis elegans

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

48 runs in ENA

SRP133269: Role of mitochondrial unfolded protein response transcription fatcor ATFS-1 in lifespan of long-lived mitochondrial mutants

Van Andel Institute

43 runs in ENA

SRP133277: Comparison of transcriptomes of N2 and fog-2(q71) mutant Caenorhabditis elegans

Haag Lab, Department of Biology, University of Maryland

152 runs in ENA

SRP133403: Neurohormonal signalling via a cytosolic sulfotransferase controls insulin sensitivity of C. elegans

SRP133439: C. elegans total RNA profiles of worms treated with RNAi for different Integrator complex

SRP133671: The Caenorhabditis elegans Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status

SRP133825: Identification of DAF-16/FoxO targets associated with longevity

DCM&B, University of Michigan

50 runs in ENA

SRP133834: Transcriptome of microbiome for the nematode Caenorhabditis elegans

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

82 runs in ENA

SRP134112: Discovery of unique loci that underlie nematode responses to benzimidazoles

Northwestern University

Andersen Lab

40 runs in ENA

SRP134126: Quantify fitness and dissect pleiotropic traits to study adaptation strategy of laboratory domesticated C. elegans strain N2

Georgia Institute of Technology

24 runs in ENA

SRP134390: RNA-seq from animals treated, and non treated, with cisplatin

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Genetic and cellular sensitivity of Caenorhabditis elegans to the chemotherapeutic agent cisplatin. (García-Rodríguez .. Cerón, 2018)

4 runs in ENA

SRP135519: Transcriptome of elt-2 for the nematode Caenorhabditis elegans

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

36 runs in ENA

SRP136035: Effects of larval density on gene regulation in C. elegans during routine L1 synchronization

SRP136535: A Protein-Protein Interaction Underlies the Molecular Basis for Substrate Recognition by an Adenosine to Inosine RNA Editing Enzyme

SRP137713: RNA-seq on D5 C. elegans in WT(N2), alg-1(gk214), alg-2(ok304)

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging. (Aalto .. Pasquinelli, 2018)

9 runs in ENA

SRP139555: Next Generation Sequencing and Quantitative Analysis of mRNAs in Wild Type and ceh-60 Mutant Caenorhabditis elegans

Integrative Program for Biological & Genome Sciences, University of North Carolina at Chapel Hill

CEH-60/PBX and UNC-62/MEIS Coordinate a Metabolic Switch that Supports Reproduction in C. elegans. (Dowen, 2019)

24 runs in ENA

SRP139961: Differential expression analysis of wildtype, atfs-1(tm4919) and zip-3(gk3164) mutant with next generation sequencing

U Mass Medical School

18 runs in ENA

SRP140674: The memory of environmental chemical exposure in C. elegans is dependent on the Jumonji demethylases jmjd-2 and jmjd-3/utx-1

Allard lab and Yang Lab, Integrative Biology and Physiology, University of California Los Angeles

The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1. (Camacho .. Allard, 2018)

12 runs in ENA

SRP142175: mRNA of fed and starved C. elegans L1 larvae 3 generations following control, short-term dauer or long-term dauer conditions

SRP143903: Transcriptional response of Caenorhabditis elegans when exposed to S. flexneri

The Australian National University

24 runs in ENA

SRP145139: mRNA-seq comparison of C. elegans L1 larvae with parents experiencing dietary restriction or ad libitum conditions

Duke University

7 runs in ENA

SRP145566: Changes in piRNA and gene expressions upon temperature shift and bacterial infection

MRC London Institute of Medical Science

29 runs in ENA

SRP146096: Chromatin accessibility dynamics across C. elegans development and ageing [lcap]

SRP146247: Chromatin accessibility dynamics across C. elegans development and ageing [scap]

SRP148595: Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns

Alexander van Oudenaarden, Hubrecht Institute

7 runs in ENA

SRP149073: mRNA-seq of effects of food perception in C. elegans

SRP149360: Gene expression regulated by warm temperature in C. elegans

SRP149465: Whole transcriptome profiling by RNA-sequencing of RNA from N2 and F01D4.5(baf20) C. elegans

SRP150084: Microtubule regulators act in the nervous system to modulate fat metabolism and longevity through DAF-16 in C. elegans

Chen Lab, Barshop Institute, Universality of Texas Health Science Center at San Antonio

Microtubule regulators act in the nervous system to modulate fat metabolism and longevity through DAF-16 in C. elegans. (Xu .. Chen, 2019)

15 runs in ENA

SRP150364: RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans

Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China

RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans. (Zhou .. Ma, 2018)

18 runs in ENA

SRP150370: C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, ''red-head worms'') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control)

SRP150372: RNA-seq transcriptome profiling of 1) C. elegans male germlines vs. oogenic germlines, and 2) male germlines, sperm, and F1 offspring germlines when offspring inherited sperm chromatin lacking H3K27me3.

SRP150643: Spatio-temporal m(i)RNA architecture and 3' UTR regulation in the C. elegans germline

Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine

Spatiotemporal m(i)RNA Architecture and 3' UTR Regulation in the C. elegans Germline. (Diag .. Rajewsky, 2018)

9 runs in ENA

SRP150845: Gene expression changes upon depletion of H3K36 methylation by mutating met-1 and RNAi depleting mes-4 in worm L1 larvae

SRP150846: Gene expression changes in mrg-1 mutant L1 larvae compared to wild type.

SRP151477: Deciphering the C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

University of Washington

85 runs in ENA

SRP151483: Caenorhabditis elegans strain:Bristol (N2) Raw sequence reads

Princeton University

20 runs in ENA

SRP151529: Transcriptional analysis of early and late generation nuclear RNAi deficient animals

UNC Genetics Department

17 runs in ENA

SRP152334: DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity

Karolinska Institute

49 runs in ENA

SRP152538: mRNA profiles of nxf-1 (t2160) and wild type C. elegans in adult stage

Centro de Investigación Biomédica de La Rioja

6 runs in ENA

SRP153335: Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression

Reinke lab, Genetics, Yale University School of Medicine

4 runs in ENA

SRP154142: WDR-23 and SKN-1 Nrf2 coordinate with the BLI-3 dual oxidase in response to iodide-triggered oxidative stress

SRP154733: Local inhibition of PRC2 activity by histone H3.3K27M drives replication defects through misregulation of the JNK pathway [RNA-seq]

SRP155352: The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans [RNA-seq]

Read Pukkila-Worley, Medicine, University of Massachusetts Medical School

The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans. (Peterson .. Pukkila-Worley, 2019)

18 runs in ENA

SRP155469: Adult C. elegans neuronal XBP-1s dependent transcriptional changes in the intestine

MRC Laboratory of Molecular Biology

6 runs in ENA

SRP155700: Caenorhabditis elegans strain:N2 Raw sequence reads

Amsterdam UMC

12 runs in ENA

SRP156483: Transcriptome wide change upon mitochondial stress in C.elegans

SRP157069: Transcriptomic Analysis of the Intracellular Pathogen Response (IPR)

Troemel, Cell and Developmental Biology, University of California, San Diego

Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. (Reddy .. Troemel, 2019)

15 runs in ENA

SRP159194: Transcriptional profiling of C. elegans on pathogenic Pseudomonas aeruginosa

SRP159488: Illumina sequencing of 4 Caenorhabditis species L4-early adult polyA+ 50bp PE RNAseq

Centre for Genomic Regulation (CRG)

2 runs in ENA

SRP159636: Polysome profiling and mRNA-seq to quantify translational gene regulation in dietary restricted C. elegans and in a long-lived daf-2:rsks-1 double mutant.

Rollins Lab, MDI Biological Laboratory

48 runs in ENA

SRP160449: Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease (worm)

DBHI, Children's Hospitla of Philadelphia

28 runs in ENA

SRP161795: Comparison of gene expression in the long-lived hsb-1 mutant and hsf-1 overexpression C. elegans strains

SRP164932: Quantitative Analysis of Worms after P. aeruginosa Infection

State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University

6 runs in ENA

SRP165209: RNA sequencing of cell-specific profile of AVK

SRP165288: A multi-parent recombinant inbred line population of Caenorhabditis elegans

Wageningen University

203 runs in ENA

SRP166156: Comparison of Pseudomonas responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166157: Comparison of R24 responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166158: Comparison of heat responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166194: Maternal and zygotic gene regulatory effects of endogenous RNAi pathways in C. elegans

The Institute of Molecular Biology (IMB)

54 runs in ENA

SRP167129: Loss of mitochondrial proline catabolism depletes FAD, impairing sperm function, and male reproductive advantage

Curran, Davis School of Gerontology, University of Southern California

12 runs in ENA

SRP168250: An unstructured MET-2/SETDB1 cofactor ensures H3K9me2, focus formation and perinuclear anchoring [RNA-seq]

SRP168626: RNA sequencing to identify NPR-8-regulated genes in C. elegans defense against pathogen infection

Washington State University

20 runs in ENA

SRP169111: Binding of an X-specific condensin correlates with a reduction in active histone modifications at gene regulatory elements

Sevinc Ercan, Biology, New York University

12 runs in ENA

SRP169815: RNASeq of C. elegans exposed to silver (Ag) or silicon dioxide (SiO2) nanoparticles

McGill University

15 runs in ENA

SRP169961: Transcriptome analysis of a multipotent progenitor and its differentiated sister in C. elegans

Virginia Commonwealth University

9 runs in ENA

SRP170618: DAF-16 stabilizes the aging transcriptome and is activated in mid-aged C. elegans to cope with internal stress

SRP170634: Transcriptome of a long-lived mutant nematode with severe mitochondrial deficiency

SRP170937: High-throughput transcriptome sequencing reveals extremely high doses of ionizing radiation-response genes in Caenorhabditis elegans

Southern Medical University

6 runs in ENA

SRP171041: Transcriptome analysis of extruded germline from wild-type C. elegans at different temperatures and under inhbition of germ stem cell proliferation

Vilchez Lab, CECAD - Cluster of Excellence

9 runs in ENA

SRP171218: Regulation of Lifespan by Neural Excitation and REST [Day 10]

Yankner, Genetics, Harvard Medical School

2 runs in ENA

SRP171604: Characterization of the genes that were regulated by feeding with CBM 588

SRP172490: Transcriptomic profiling of C. elegans hermaphrodites and feminized (fem-1) individuals following a 2 hour interaction with males or without a male interaction

Stanford University

32 runs in ENA

SRP172706: RNA-seq transcriptome profiling of hybrid (hawaii mother and bristol father) C. elegans H3K27me3 M+P+ vs. M+P- hermaphrodite germlines

SRP172974: Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans

STANFORD UNIVERSITY

9 runs in ENA

SRP173196: A Persistence Detector for Metabolic Network Rewiring in an Animal

Walhout, Program in Systems Biology, Univesity of Massachusetts Medical School

A Persistence Detector for Metabolic Network Rewiring in an Animal. (Bulcha .. Walhout, 2019)

18 runs in ENA

SRP173212: Transcriptional redirection of activated SKN-1/NRF2 abates the negative metabolic outcomes of a perceived pathogen infection

Curran, Davis School of Gerontology, University of Southern California

15 runs in ENA

SRP173463: Loss of miR-83 extends lifespan and affects target gene expression in an age-dependent manner in Caenorhabditis elegans

SRP173638: Comprehensive Transcriptome Analysis of Cerebral Cavernous Malformation Across Multiple Species and Genotypes

SRP173805: Neuronal Small RNAs Control Behavior Transgenerationally

Oded Rechavi lab, Neurobiology, Tel Aviv University

Neuronal Small RNAs Control Behavior Transgenerationally. (Posner .. Rechavi, 2019)

27 runs in ENA

SRP174025: RNA-seq: WT under proteotoxic stress conditions

Hoppe Lab, Institut für Genetik, CECAD Cologne and Institute for Genetics

21 runs in ENA

SRP174479: Gene expression profile of N2 and HPX-2 mutant C.elegans strains when exposed to E.coli and E.faecalis

Danielle Garsin, Microbiology and Molecular Genetics, University of Texas Health Science Center at Houston

Heme peroxidase HPX-2 protects Caenorhabditis elegans from pathogens. (Liu .. Garsin, 2019)

16 runs in ENA

SRP178555: Multi-omics and genome-scale modeling reveal a metabolic shift during C. elegans ageing

SRP182100: A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes

Stanford University

8 runs in ENA

SRP182604: Expression analysis of C. elegans eat-2, eat-2; acs-22 and eat-2; pmk-1; acs-22 mutants

Di Chen lab, Model Animal Research Center, Nanjing University

9 runs in ENA

SRP182605: Expression analysis of C. elegans wild-type N2, eat-2, acs-20 and eat-2; acs-20 mutants

Di Chen lab, Model Animal Research Center, Nanjing University

12 runs in ENA

SRP183504: Simple Nutrients Bypass the Requirement for HLH-30 in Coupling Lysosomal Nutrient Sensing to Survival.

Washington University School of Medicine

32 runs in ENA

SRP185453: RNA memories: trans-generational epigenetic inheritance of RNA-mediated gene silencing

Eric Miska Lab, The Gurdon Institute, University of Cambridge

20 runs in ENA

SRP185898: Caenorhabditis elegans Transcriptome analysis on exposure to E. faecalis

Indian Institute of Science

6 runs in ENA

SRP185924: RNA-seq using the Cel-Seq2 method, of wild type and 35-polyglutamine (polyQ35) expressing C. elegans worms treated with RNAi toward anc-1, or left untreated (EV) gene expression profiles.

Ehud Cohen, Biochemistry and Molecular Biology, The Hebrew University of Jerusalem

14 runs in ENA

SRP186006: HLH-30/TFEB is a master regulator of reproductive quiescence

Bioinformatics, Max Planck Institute for Biology of Ageing

16 runs in ENA

SRP186354: Transcriptomics-based screening identifies pharmacological inhibition of Hsp90 as a means to defer aging

SRP186357: Wounding triggers MIRO-1 dependent mitochondrial fragmentation that accelerates epidermal wound closure through oxidative metabolic signaling

Zhejiang University

6 runs in ENA

SRP186435: C. elegans CB4856 genome project using long-read sequencing

Seoul National University

2 runs in ENA

SRP187223: Caenorhabditis elegans Transcriptome analysis on exposure to P. aeruginosa

Indian Institute of Science

6 runs in ENA

SRP187392: Caenorhabditis elegans Transcriptome analysis on exposure to C. neoformans

Indian Institute of Science

6 runs in ENA

SRP187714: NFYB-1 regulates mitochondrial function and longevity via lysosomal prosaposin

Bioinformatics, Max Planck Institute for Biology of Ageing

12 runs in ENA

SRP187904: The transcription factors TFEB and TFE3 link the FLCN-AMPK signaling axis to innate immune response and pathogen resistance [RNA-seq]

SRP188146: Caenorhabditis elegans Transcriptome

Georgia Institute of Technology

47 runs in ENA

SRP188258: A beneficial genomic rearrangement creates multiple versions of calcipressin in C. elegans

Georgia Institute of Technology

12 runs in ENA

SRP188887: X chromosome domain architecture regulates Caenorhabditis elegans lifespan but not dosage compensation [RNA-seq]

Meyer, MCB, HHMI/UC Berkeley

13 runs in ENA

SRP189364: Analysis of mRNA expression changes caused by mdt-15(tm2182) mutation at 15oC and 25 oC

Room 4203, Life Sciences, KAIST

12 runs in ENA

SRP189714: Transcriptome analysis of mir-1-deficient and ins-1-deficient Caenorhabditis elegans

Monash Bioinformatics Platform, Monash University

6 runs in ENA

SRP192010: RNA-seq for sf3b-1 alleles

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

16 runs in ENA

SRP192875: Effects of cadmium and integrator complex knockdown on gene expression and mRNA splicing

University of Saskatchewan

18 runs in ENA

SRP194189: The transcriptomic response to albendazole (ABZ), mebendazole (MBZ), thiabendazole (TBZ), oxfendazole (OxBZ) and fenbendazole (FBZ) in the C. elegans strain CB3474 ben-1(e1880)III

Faculty Veterinary Medicine, University of Calgary

18 runs in ENA

SRP194257: Caenorhabditis elegans pathogenic learning confers multigenerational pathogen avoidance

Princeton University

18 runs in ENA

SRP194924: Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis

computational Biology, Max-Planck-Institute for biochemistry

15 runs in ENA

SRP195497: Identification of proteins and miRNAs that specifically bind an mRNA in vivo [total RNA]

BIMSB/MDC

6 runs in ENA

SRP195779: mRNA sequencing time course of C. elegans samples at time point 0 hours until time point 15 hours at 25 degree.

Friedriche Miescher Institute for Biomedical Research (FMI)

16 runs in ENA

SRP195783: mRNA-seq time course of C. elegans sampled from 5h until 48h at 25 degrees

Friedriche Miescher Institute for Biomedical Research (FMI)

44 runs in ENA

SRP197111: Epigenetic bookmarking of H2S exposure in Caenorhabditis elegans

Biochemistry, University of Washington

12 runs in ENA

SRP197132: Bulk RNA sequencing of cell specific profile of RIS

David M Miller III, Cell and Developmental Biology, Vanderbilt University

6 runs in ENA

SRP197305: Innate immunity in the C. elegans intestine is programmed by a neuronal regulator of AWC olfactory neuron development

Pukkila-Worley, Medicine, University of Massachusetts Medical School

7 runs in ENA

SRP198494: Identification of the m6Am Methyltransferase PCIF1 Reveals the Location and Functions of m6Am in the Transcriptome.

Medicine, Brigham and Women's Hospital


12 runs in ENA

SRP199407: C. elegans ENDU-2 RNA binding profile

University of Freiburg

11 runs in ENA

SRP199676: Ferritin regulation upon ETS-4/SPDEF depletion promotes cold survival in C. elegans

Rafal Ciosk group, Department of Biosciences, University of Oslo

16 runs in ENA

SRP199933: N2, daf-1(m40), and daf-1(m40);daf-3(mgDf90) adult, gravid hermaphrodites

Rosa Serra, CDIB, University of Alabama at Birmingham

16 runs in ENA

SRP201227: The transcriptional response of C. elegans to statins: general and p38 dependent responses

University of Haifa

22 runs in ENA

SRP201545: Neuronal TORC1 modulates longevity via AMPK and cell nonautonomous regulation of mitochondrial dynamics in C. elegans

Harvard School of Public Health

12 runs in ENA

SRP201610: RNA Sequencing of CTRL and Heat Stressed C. elegans [RNA-seq]

Dr. Amy Pasquinelli, Biological Sciences, UCSD

6 runs in ENA

SRP201630: Caenorhabditis elegans sequencing

UC Santa Cruz

16 runs in ENA

SRP212119: LSM2-8 and XRN-2 contribute to the silencing of H3K27me3 marked genes through targeted RNA decay II

Friedrich Miescher Institute

12 runs in ENA

SRP213442: Epimutations in Caenorhabditis elegans mutation accumulation lines

Peter Sarkies lab - MRC London Institute of Medical Sciences/Imperial College London

44 runs in ENA

SRP214438: The C. elegans ortholog of human selenium binding protein 1 is a pro-aging factor protecting against selenite toxicity

Core Facility Life Science Computing, Leibniz Institute on Aging - Fritz Lipmann Institute

6 runs in ENA

SRP215493: RNAi pathways repress reprogramming of C. elegans germ cells during heat stress

University of Southern California

12 runs in ENA

SRP215886: meg-3 meg-4 upregulate endogenous sRNAs targeting RNAi genes and downregulate their mRNAs

Molecular Biology and Genetics, JHU School of Medicine

4 runs in ENA

SRP215971: Oligosaccharyl transferase that maintains ER homeostasis enhances immunity via up-regulating p38 MAP kinase signaling in C. elegans

Room 4203, Life Sciences, KAIST

11 runs in ENA

SRP216603: RNA-seq analysis in syp-2::AID and N2 controls with and without auxin treatment (4 hours at 4 mM concentration)

MRC London Institute of Medical Sciences (LMS)

9 runs in ENA

SRP218433: DAF-16/FOXO requires Protein Phosphatase 4 to drive the transcription of stress resistance and longevity promoting genes

Karolinska Institute

9 runs in ENA

SRP218832: Transcriptional profiling of Caenorhabditis elegans and Caenorhabditis briggsae before and after heat shock

University of California, San Diego

6 runs in ENA

SRP218889: Transcriptome of the nematode Caenorhabditis elegans infected by Bacillus thuringiensis

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

62 runs in ENA

SRP218904: Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia

University of Nebraksa-Lincoln

12 runs in ENA

SRP221060: RNA Sequencing of C elegans control and mutant worms after 24 hour P.aeruginosa infection

6351 RICHARD JONES HALL, Molecular Microbiology and Immuno, Oregon health and science university

4 runs in ENA

SRP221359: Repression of an activity-dependent autocrine insulin signal is required for sensory neuron development in C. elegans

Ringstad, Cell Biology, NYU School of Medicine

6 runs in ENA

SRP223301: Temporal transcriptional profiling of in vivo cellular reprogramming and transorganogenesis in C. elegans

Rothman, MCDB, University of California Santa Barbara

126 runs in ENA

SRP223375: C. elegans LPIN-1 moderates lifespan-shortening effects of dietary glucose via maintaining ?-6 polyunsaturated fatty acids

Room 4203, Life Sciences, KAIST

12 runs in ENA

SRP223634: VRK-1 Extends Lifespan by Activation of AMPK via Phosphorylation

Room 4203, Life Sciences, KAIST

5 runs in ENA

SRP223779: A Tudor-domain containing protein, SIMR-1, mediates silencing of piRNA target mRNAs by the Mutator Complex

University of Southern California

24 runs in ENA

SRP223893: Characterization of the transcriptional response to Orsay RNA1

Troemel, Cell and Developmental Biology, University of California, San Diego

12 runs in ENA

SRP224472: RNA-seq of C elegans during transient heatshock

University of Iowa

18 runs in ENA

SRP224605: Developmental ROS targets histone methylation to individualize stress resistance and lifespan

University of Michigan

8 runs in ENA

SRP226515: Neuronal transcriptome analyses reveal novel neuropeptide modulators of excitation and inhibition imbalance in C. elegans

University of California, San Diego

3 runs in ENA

SRP228537: Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq datasets)

Dr. Geraldine Seydoux, MBG, Johns Hopkins University

6 runs in ENA

SRP228538: Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)

Dr. Geraldine Seydoux, MBG, Johns Hopkins University

6 runs in ENA

SRP228777: Caenorhabditis elegans RNA-seq

Animal Science, Guangdong Academy of Agricultural Sciences

9 runs in ENA

SRP230370: Four glial cells regulate ER stress resistance and longevity via neuropeptide signaling

University of California, Berkeley

6 runs in ENA

SRP231447: mRNA-seq of wild-type(N2), hlh-11 knock-out(KO) and hlh-11 over-expression(OE) worms

PKU

6 runs in ENA

SRP233296: mRNA-seq of worms and the mitochondrial unfolded protein response (UPRmt)

Peking University

24 runs in ENA

SRP233481: Evolutionarily Conserved Regulation of Immunity by the Splicing Factor RNP-6/PUF60

Bioinformatics, Max Planck Institute for Biology of Ageing

7 runs in ENA

SRP234406: Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans

Department of Biology, Colorado State University

27 runs in ENA

SRP234452: Slo2 potassium channel function depends on a SCYL1 protein

Neuroscience, University of Connecticut Health Center

6 runs in ENA

SRP234874: mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degrees [N2 control]

Friedriche Miescher Institute for Biomedical Research (FMI)

23 runs in ENA

SRP235050: Transcriptome of C. elegans upon alteration of 5-HT

University of Iowa

3 runs in ENA

SRP235168: RNA-seq of C elegans with serotonin treatment

University of Iowa

3 runs in ENA

SRP239115: C. elegans mRNA-seq of presynaptic and somatic mRNAs

Princeton University

7 runs in ENA

SRP241823: Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons

Division of Infectious Diseases, Boston Children's Hospital

14 runs in ENA

SRP241835: The basic-helix-loop-helix transcription factor ngn-1/neurogenin activates transcription of multiple terminal selector transcription factors in the Caenorhabditis elegans nervous system

Molecular and Cellular Biology, Kennesaw State University

2 runs in ENA

SRP242209: RNAseq of C. elegans grown with different bacteria isolates

McGill University

9 runs in ENA

SRP242244: Defective axon guidance links H3K4 deregulation to neurodevelopment disorder

Salcini, BRIC, Copenhagen University

11 runs in ENA

SRP242469: Maternal reprogramming of histone methylation regulates germline versus somatic cell fates [RNA-seq]

435, Cell Biology, Emory University

8 runs in ENA

SRP243724: Insights into the involvement of spliceosomal mutations in myelodysplastic disorders from an analysis of SACY-1/DDX41 in Caenorhabditis elegans

Genetics, Cell Biology and Development, University of Minnesota

11 runs in ENA

SRP243896: RNA-seq transcriptome profiling of C. elegans mutants defective in IL-17 signaling

MRC Laboratory of Molecular Biology

72 runs in ENA

SRP244263: Genome-wide expression analysis of C. elegans nematodes after feeding RNAi impairment of the transcription factors lin-32 and hlh-2

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

5 runs in ENA

SRP244671: Next Generation Sequencing for Transcriptomes Analysis for LAG-1 time course by auxin treatment.

Tim Schedl, Genetics, Washington University School of Medicine

16 runs in ENA

SRP244672: Next Generation Sequencing for Transcriptomes Analysis in GLP-1 Notch receptor ON and OFF genetic background

Tim Schedl, Genetics, Washington University School of Medicine

10 runs in ENA

SRP246334: Total, polysome and monosome RNAseq of Caenorhabditis elegans strains ppp-1(wrm10), ppp-1(wrm15) and wild type

Max Planck Institute for Biology of Ageing

34 runs in ENA

SRP246887: NHR-8 regulated P-glycoproteins uncouple xenobiotic stress resistance from longevity in chemosensory C. elegans mutants

Max Planck Institute for Biology of Ageing

16 runs in ENA

SRP246903: H3.3 nucleosome assembly mutants display a late-onset maternal effect

Koch Institute

18 runs in ENA

SRP249322: Gene expression profile of C. elegans biogenic amine synthesis mutants

Rongo Lab, Genetics, Waksman Institute / Rutgers University

9 runs in ENA

SRP250832: Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans

Weaver, Pharmacology, University of Texas Southwestern Medical Center

6 runs in ENA

SRP251352: Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans

Miska Lab, The Gurdon Inst., University of Cambridge

9 runs in ENA

SRP251689: Lifespan and healthspan benefits of FW1256, a novel hydrogen sulfide donor compound, in C. elegans are independent from effects downstream of eat-2 mutation

Ageing Research Laboratory, Science/Biochemistry, Yale-NUS College/National University of Singapore

11 runs in ENA

SRP251725: Genome-wide profiling of age-dependent changes in gene expression between L4 larvae and Day 6 adult Caenorhabditis elegans

MYoungman, Biology, Villanova University

4 runs in ENA

SRP252379: Chromatin remodeling and the acute behavioral response to alcohol

Virginia Commonwealth University

20 runs in ENA

SRP253699: mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degree [blmp-1(tm548) mutant]

Friedriche Miescher Institute for Biomedical Research (FMI)

24 runs in ENA

SRP253718: The zinc-finger protein OEF-1 stabilizes patterns of activating and silencing modifications in the C. elegans germ line

Reinke lab, Genetics, Yale University School of Medicine

5 runs in ENA

SRP254903: mRNA-seq time course of C. elegans sampled at and after release from dauer starvation at 25 degrees

Friedriche Miescher Institute for Biomedical Research (FMI)

1 run in ENA

SRP255188: poly(UG)-tailed RNAs in Genome Protection and Epigenetic Inheritance [RNA-Seq]

Kennedy, Genetics, Harvard Medical School

4 runs in ENA

SRP255758: Regulation of the transcriptional response to mechanical trauma by vhp-1

Molecular Biology, UT Southwestern Medical Center

10 runs in ENA

SRP260162: Gene expression in adult Caenorhabditis elegans daf-7 null mutants

SRP260797: The Phenotypic and Genotypic Response of the Caenorhabditis elegans nematode to Background and Below-Background Radiation Levels

New Mexico State University

3 runs in ENA

SRP265767: CREB regulates Reproductive Aging through Hedgehog/Patched Signaling

Princeton University

6 runs in ENA

SRP266031: C. elegans methionine/S-adenosylmethionine cycle activity is sensed and adjusted by a nuclear hormone receptor: RNA-seq dataset 2

Walhout, Program in Systems Biology, University of Massachusetts Medical School

18 runs in ENA

SRP266179: A molecular mechanism to regulate neural-specific A-to-I editing during development

Hundley, Biology, Indiana University, Bloomington

18 runs in ENA

SRP268496: Transcriptome Analysis of Caenorhabditis elegans Lacking Heme Peroxidase SKPO-1 Reveals an Altered Response to Enterococcus faecalis

Host-Microbe Co-Metabolism, Medical Research Council

14 runs in ENA

SRP268987: RNA-seq of C. elegans glp-1 hermaphrodites with and without sexual interactions with males

Stanford University

40 runs in ENA

SRP272453: Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility through distinct small RNA classes

Claycomb, Molecular Genetics, University of Toronto

10 runs in ENA