WormBase ParaSite HomeVersion: WBPS13 (WS269)
RNASeq Caenorhabditis elegans

Caenorhabditis elegans - public RNASeq studies

Analysed

SRP010374: Wobble Base-pairing Slows in vivo Translation Elongation in Metazoans

Stanford University

Wobble base-pairing slows in vivo translation elongation in metazoans. (Stadler .. Fire, 2011)

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L1 larva Ce 6 L1 larva Ce organism hermaphrodite N2
L2 larva Ce 2 L2 larva Ce organism hermaphrodite N2
L3 larva Ce 7 L3 larva Ce organism hermaphrodite N2
L4 larva Ce 4 L4 larva Ce organism hermaphrodite N2

SRP014427: Caenorhabditis elegans ribosome profiling of miRNA targets

Stanford University

Design: 3 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L1 larva Ce 2 L1 larva Ce organism hermaphrodite N2
L2 larva Ce 3 L2 larva Ce organism hermaphrodite N2
L4 larva Ce 2 L4 larva Ce organism hermaphrodite N2

SRP015688: C. elegans linker cell transcriptome

California Institute of Technology

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L3 larva Ce, linker cell, male, PS4730 5 L3 larva Ce linker cell male PS4730
L4 larva Ce, linker cell, male, PS4730 9 L4 larva Ce linker cell male PS4730
all stages Ce, organism, hermaphrodite, N2 1 all stages Ce organism hermaphrodite N2
larva Ce, organism, hermaphrodite, N2 1 larva Ce organism hermaphrodite N2

SRP017621: Using RNA-seq to identify transcriptional targets of MAB-5 in C. elegans

University of Kansas

Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
LE2544 8 L1 larva Ce organism hermaphrodite LE2544
LE2962 6 L1 larva Ce organism hermaphrodite LE2962
LE2963 6 L1 larva Ce organism hermaphrodite LE2963
LE3037 6 L1 larva Ce organism hermaphrodite LE3037

SRP029448: Spatiotemporal embryonic transcriptomics reveals the evolutionary history of the endoderm germ layer

Yanai, Biology, Technion - Israel Institute of Technology

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. (Hashimshony .. Yanai, 2015)

Design: 78 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
110 min post first-cleavage, AB 2 110 min post first-cleavage AB hermaphrodite N2
110 min post first-cleavage, C 2 110 min post first-cleavage C hermaphrodite N2
110 min post first-cleavage, E 1 110 min post first-cleavage E hermaphrodite N2
110 min post first-cleavage, MS 3 110 min post first-cleavage MS hermaphrodite N2
110 min post first-cleavage, ventral cord blast cell 1 110 min post first-cleavage ventral cord blast cell hermaphrodite N2
120 min post first-cleavage, organism 1 120 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, AB 1 140 min post first-cleavage AB hermaphrodite N2
140 min post first-cleavage, C 1 140 min post first-cleavage C hermaphrodite N2
140 min post first-cleavage, E 3 140 min post first-cleavage E hermaphrodite N2
140 min post first-cleavage, organism 1 140 min post first-cleavage organism hermaphrodite N2
140 min post first-cleavage, ventral cord blast cell 3 140 min post first-cleavage ventral cord blast cell hermaphrodite N2
150 min post first-cleavage, organism 1 150 min post first-cleavage organism hermaphrodite N2
170 min post first-cleavage, organism 1 170 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, AB 3 180 min post first-cleavage AB hermaphrodite N2
180 min post first-cleavage, C 2 180 min post first-cleavage C hermaphrodite N2
180 min post first-cleavage, E 3 180 min post first-cleavage E hermaphrodite N2
180 min post first-cleavage, MS 2 180 min post first-cleavage MS hermaphrodite N2
180 min post first-cleavage, organism 1 180 min post first-cleavage organism hermaphrodite N2
180 min post first-cleavage, ventral cord blast cell 2 180 min post first-cleavage ventral cord blast cell hermaphrodite N2
190 min post first-cleavage, organism 1 190 min post first-cleavage organism hermaphrodite N2
2-cell embryo, AB 2 2-cell embryo AB hermaphrodite N2
2-cell embryo, organism 2 2-cell embryo organism hermaphrodite N2
20 min post first-cleavage, AB 4 20 min post first-cleavage AB hermaphrodite N2
20 min post first-cleavage, EMS 3 20 min post first-cleavage EMS hermaphrodite N2
20 min post first-cleavage, P2 2 20 min post first-cleavage P2 hermaphrodite N2
200 min post first-cleavage, organism 1 200 min post first-cleavage organism hermaphrodite N2
210 min post first-cleavage, organism 1 210 min post first-cleavage organism hermaphrodite N2
220 min post first-cleavage, organism 2 220 min post first-cleavage organism hermaphrodite N2
240 min post first-cleavage, organism 2 240 min post first-cleavage organism hermaphrodite N2
250 min post first-cleavage, organism 1 250 min post first-cleavage organism hermaphrodite N2
270 min post first-cleavage, AB 2 270 min post first-cleavage AB hermaphrodite N2
270 min post first-cleavage, C 1 270 min post first-cleavage C hermaphrodite N2
270 min post first-cleavage, E 3 270 min post first-cleavage E hermaphrodite N2
270 min post first-cleavage, MS 2 270 min post first-cleavage MS hermaphrodite N2
270 min post first-cleavage, ventral cord blast cell 1 270 min post first-cleavage ventral cord blast cell hermaphrodite N2
280 min post first-cleavage, organism 1 280 min post first-cleavage organism hermaphrodite N2
290 min post first-cleavage, organism 1 290 min post first-cleavage organism hermaphrodite N2
30 min post first-cleavage, organism 1 30 min post first-cleavage organism hermaphrodite N2
310 min post first-cleavage, organism 1 310 min post first-cleavage organism hermaphrodite N2
320 min post first-cleavage, organism 1 320 min post first-cleavage organism hermaphrodite N2
340 min post first-cleavage, organism 1 340 min post first-cleavage organism hermaphrodite N2
350 min post first-cleavage, organism 1 350 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, AB 3 360 min post first-cleavage AB hermaphrodite N2
360 min post first-cleavage, E 1 360 min post first-cleavage E hermaphrodite N2
360 min post first-cleavage, MS 1 360 min post first-cleavage MS hermaphrodite N2
360 min post first-cleavage, organism 1 360 min post first-cleavage organism hermaphrodite N2
360 min post first-cleavage, ventral cord blast cell 1 360 min post first-cleavage ventral cord blast cell hermaphrodite N2
380 min post first-cleavage, organism 1 380 min post first-cleavage organism hermaphrodite N2
390 min post first-cleavage, organism 1 390 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, AB 3 40 min post first-cleavage AB hermaphrodite N2
40 min post first-cleavage, C 1 40 min post first-cleavage C hermaphrodite N2
40 min post first-cleavage, E 3 40 min post first-cleavage E hermaphrodite N2
40 min post first-cleavage, MS 3 40 min post first-cleavage MS hermaphrodite N2
40 min post first-cleavage, organism 1 40 min post first-cleavage organism hermaphrodite N2
40 min post first-cleavage, ventral cord blast cell 3 40 min post first-cleavage ventral cord blast cell hermaphrodite N2
400 min post first-cleavage, organism 1 400 min post first-cleavage organism hermaphrodite N2
410 min post first-cleavage, organism 1 410 min post first-cleavage organism hermaphrodite N2
420 min post first-cleavage, organism 1 420 min post first-cleavage organism hermaphrodite N2
430 min post first-cleavage, organism 1 430 min post first-cleavage organism hermaphrodite N2
440 min post first-cleavage, organism 1 440 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, AB 3 60 min post first-cleavage AB hermaphrodite N2
60 min post first-cleavage, C 3 60 min post first-cleavage C hermaphrodite N2
60 min post first-cleavage, E 3 60 min post first-cleavage E hermaphrodite N2
60 min post first-cleavage, MS 3 60 min post first-cleavage MS hermaphrodite N2
60 min post first-cleavage, organism 1 60 min post first-cleavage organism hermaphrodite N2
60 min post first-cleavage, ventral cord blast cell 2 60 min post first-cleavage ventral cord blast cell hermaphrodite N2
70 min post first-cleavage, organism 1 70 min post first-cleavage organism hermaphrodite N2
80 min post first-cleavage, organism 1 80 min post first-cleavage organism hermaphrodite N2
90 min post first-cleavage, AB 2 90 min post first-cleavage AB hermaphrodite N2
90 min post first-cleavage, C 2 90 min post first-cleavage C hermaphrodite N2
90 min post first-cleavage, E 3 90 min post first-cleavage E hermaphrodite N2
90 min post first-cleavage, MS 3 90 min post first-cleavage MS hermaphrodite N2
90 min post first-cleavage, ventral cord blast cell 2 90 min post first-cleavage ventral cord blast cell hermaphrodite N2
comma embryo, AB 2 comma embryo AB hermaphrodite N2
comma embryo, C 2 comma embryo C hermaphrodite N2
comma embryo, E 2 comma embryo E hermaphrodite N2
comma embryo, MS 2 comma embryo MS hermaphrodite N2
comma embryo, ventral cord blast cell 1 comma embryo ventral cord blast cell hermaphrodite N2

SRP045110: Blastomere-specific transcriptome sequencing reveals a determinant of anterior specification in C. elegans

Biochemistry and Molecular Biology, Colorado State University

Asymmetric transcript discovery by RNA-seq in C. elegans blastomeres identifies neg-1, a gene important for anterior morphogenesis. (Osborne Nishimura .. Lieb, 2015)

Design: 2 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
AB 3 2-cell embryo Ce AB hermaphrodite N2
P1 3 2-cell embryo Ce P1 hermaphrodite N2

SRP049412: Defining soma-specific/enriched and germline-specific/enriched transcripts

Other

These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!

DRP000898: mRNAseq for the unc-75 mutant

DRP002871: mRNA-seq of N2 and smg-2 to identify NMD isoforms

TOKYO_MEDEN

2 runs in ENA

DRP004388: Transcriptome analysis between wild-type and endu-2 mutant

KONAN

15 runs in ENA

ERP003471: RNA-seq transcript assembly evaluation

European Molecular Biology Laboratory

To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLIDE, Transomics, Trembly, Tromer and Velvet) were evaluated against transcriptome data from human cells and two model organisms.

3 runs in ENA

ERP010876: MML-1/Mondo complexes regulate HLH-30/TFEB via TOR inhibition to promote longevity in response to signals from the reproductive system

Max Planck Institute for Biology of Ageing

Comprehensive transcriptome analysis of hlh-30, mml-1 and mxl-2 in N2 (wildtype) and glp-1 background.

32 runs in ENA

ERP013714: Functional sequestration of MOAG-2/LIR-3 by polyglutamine expansion proteins

European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen

Transcriptome profiling of Lir3 C.elegans mutants. Larval stage L4 worms were used for RNA isolation from N2 (Bristol), Q40 (polyglutamine model) genetic background; Lir3 and wiltype controls. Experiments were done in triplicates using ribosomal RNA depletion. Libraries were sequenced with 50bp reads on Illumina HiSeq2500 platform

27 runs in ENA

ERP014488: Differential gene analysis to identify genes expressed in AMsh glia and genes that are pros-1-dependent in C. elegans

THE ROCKEFELLER UNIVERSITY

AMsh glia were isolated from C. elegans L4 larvae by FACS, based on expression of a dsRed marker under control of the AMsh glia-specific marker F16F9.3. From control animals, dsRed-positive and dsRed-negative samples were compared to identify AMsh glia-enriched genes. To identify glial targets of the transcription factor pros-1/Prospero, dsRed-positive samples from control and pros-1(RNAi) animals were compared.

10 runs in ENA

ERP015607: RNA-seq analysis of C. elegans CPEB homolog mutants.

Institute of Molecular Life Sciences, University of Zurich

Comparative transcriptomics study between C. elegans wild-type N2 and CPEB homolog mutants: fog-1, cpb-2, and cpb-3.

27 runs in ENA

ERP016265: Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans

Department of Biochemistry and Molecular Biology University of Southern Denmark

RNA-seq of C.elegans strain N2 (wt) with and without sfa-1 RNAi at adult day 3 and day 15, C. elegans strain DA1116 (eat-2(ad1116)) with and without sfa-1 RNAi at adult day 3, day 15, and day 27, C. elegans strain SS104 (glp-4(bn2)) with and without hrp-2 RNAi at adult day 1, and HeLa cells with and without SF1 siRNA.

41 runs in ENA

ERP016404: RNA-Seq of Caenorhabditis elegans Mi2-depleted embryos at 24- and 100-cell stages

University of Fribourg Biology department Zoology institute

We aimed at identifying the transcriptomes of single and double mutants of the two C.elegans Mi2 homologues, let-418 and chd-3. Embryos depleted for one or both genes were manually sorted and synchronised at the 24- and 100-cell stages, and their transcriptome compared to control embryos in order to identify de-regulated target genes, and determine whether the two Mi2 proteins are functionally redundant.

17 runs in ENA

ERP016462: Small RNA and total RNA sequencing of C. elegans with mutations in the hrde-1 and emb-4 genes

Gurdon Institute

11 runs in ENA

ERP016513: Analysis of post-transcriptional RNA modifications in Caenorhabditis elegans under stress

Gurdon Institute

Syncronised population of L1 animals were grown until young adult stage. For heat stress, animals were heat-shocked at 37℃ for 4hrs with food. For starvation experiments, young adult stage animals were plated on either food plates for control or on empty plates for starvation at 20℃ for 4hrs.

9 runs in ENA

ERP110557: RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans

KU Leuven, Centre of Microbial and Plant Genetics (CMPG)

This study uses total and polysomal RNA-sequencing to show that the translational efficiencies of specific mRNAs change depending on the mitochondrial activity in longer-lived C. elegans.

49 runs in ENA

SRP000244: Whole-genome sequencing and variant discovery in Caenorhabditis elegans by Illumina sequencing

The Genome Institute at Washington University

Whole-genome sequencing and variant discovery in C. elegans. (Hillier .. Mardis, 2008)

2 runs in ENA

SRP000401: Deep sequencing of the Caenorhabditis elegans transcriptome using RNA isolated from various developmental stages under various experimental conditions RW0001

The goal of this study, started as a part of the modENCODE project, is to detect and characterize previously unannotated transcripts of the C. elegans genome.
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. (Hillier .. Waterston, 2009)

539 runs in ENA

SRP001010: A high resolution transcriptome map for both wild-type and NMD defective C. elegans

SRP003492: Caenorhabditis angaria genome sequencing project

SRP003783: Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome

SRP003896: Formation, regulation and evolution of 3'' UTRs in Caenorhabditis elegans

SRP005562: mRNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites

Fire, Genetics, Stanford University

3 runs in ENA

SRP008241: Analysis of Caenorhabditis elegans intestinal gene expression and alternative polyadenylation using fluorescence-activated nuclei sorting (FANS) and 3'' end deep sequencing (3''end-seq)

SRP009274: In vivo and transcriptome-wide identification of RNA-binding protein target sites [RNA-Seq]

SRP010646: Caenorhabditis elegans strain:N2, adr-1, adr-2, adr-1;adr-2 Transcriptome or Gene expression

SRP011038: Impaired Insulin-/IGF1-Signaling Extends Life Span by Promoting Mitochondrial L-Proline Catabolism to Induce a Transient ROS-Signal

SRP012065: Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans

CAS Key Laboratory of RNA Biology, Institute of Biophysics, Chinsese Academy of Sciences

Identification of intermediate-size non-coding RNAs involved in the UV-induced DNA damage response in C. elegans. (Li .. Chen, 2012)

3 runs in ENA

SRP013749: C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts

Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School

C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts. (Lee .. Mello, 2012)

2 runs in ENA

SRP014544: RNA-seq quantification of expression changes upon unc-62 knockdown in adult Caenorhabditis elegans.

SRP014672: CEL-Seq transcriptomic analysis of C. elegans blastomeres

Technion - Israel Institute of Technology

1 runs in ENA

SRP014826: C. elegans piRNAs are processed from capped-small RNAs transcribed at promoters throughout the genome

Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School

CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. (Gu .. Mello, 2012)

2 runs in ENA

SRP015332: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes

Raetsch Lab, Computational Biology, Memorial Sloan Kettering Cancer Center

Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. (Smith .. Rätsch, 2012)

4 runs in ENA

SRP015918: Influence of p38 MAPK (PMK-1) on the heat stress response of C. elegans

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

6 runs in ENA

SRP017438: Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq]

SRP017486: The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel regulatory architecture

SRP017908: DAF-16/FOXO uses SWI/SNF to regulate transcription.

Massachusetts General Hospital

8 runs in ENA

SRP018033: NO-mediated transcriptional response in C. elegans

SRP018867: Next generation sequencing facilitates quantitative analysis of Caenorhabditis elegans N2 wild type, emr-1(gk119), lem-2(tm1582) and emr-1(RNAi) lem-2(tm1582) transcriptomes.

SRP020357: Genome-wide distribution of the three condensin complexes in C. elegans

SRP021083: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of rotenone at 4 different time points

Leibniz Institute for Age Research - Fritz Lipmann Institute

22 runs in ENA

SRP021462: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of arsenite

Leibniz Institute for Age Research - Fritz Lipmann Institute

Mitochondrial hormesis links low-dose arsenite exposure to lifespan extension. (Schmeisser .. Ristow, 2013)

4 runs in ENA

SRP021487: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence of 2-deoxy-D-glucose (DOG) at 4 different time points

SRP023261: Caenorhabditis elegans Transcriptome or Gene expression

The Genome Institute

6 runs in ENA

SRP023543: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

institute of biophysics

2 runs in ENA

SRP027592: Dampening of expression oscillations by synchronous regulation of a microRNA and its target

SRP028602: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of 1-methylnicotinamide (MNA) and nicotinic acid (NA)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. (Schmeisser .. Ristow, 2013)

9 runs in ENA

SRP028611: Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans

Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School

Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans. (Conine .. Mello, 2013)

2 runs in ENA

SRP028863: Profiling of RNA editing in Caenorhabditis elegans

Center of Bioinformatics, Peking University

17 runs in ENA

SRP028875: Global effects of the CSR-1 RNA interference pathway on transcriptional landscape

Alla Grishok, Biochemistry and Molecular Biophysics, Columbia University

Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape. (Cecere .. Grishok, 2014)

3 runs in ENA

SRP031831: The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome

SRP033410: Extensive oscillatory gene expression during C. elegans larval development [RNA-seq for polyA enriched mRNAs]

SRP033412: Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]

SRP034522: Conservation of mRNA and protein expression during development of C. elegans

SRP034667: Male and Female DNA and RNA sequencing in several nematode species

SRP035281: A Genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis

SRP035507: Caenorhabditis elegans transcriptome, in response to albendazole

SRP036048: mRNAs that co-purify with OMA-1 in the C. elegans germline (sequencing)

SRP037555: RNA-seq of C.elegans and M.musculus in the presence and absence of D-Glucosamine (GlcN)

Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI

D-Glucosamine supplementation extends life span of nematodes and of ageing mice. (Weimer .. Ristow, 2014)

12 runs in ENA

SRP038704: RNA-seq analysis of WT and blmp-1(tm548) mutant L3 larvae

SRP038923: Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL RNA-Seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP040269: mRNA profile in DR-related mutants

SRP040623: The expression mRNAs after prg-1 mutation

Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences

The influences of PRG-1 on the expression of small RNAs and mRNAs. (Wang .. Huang, 2014)

4 runs in ENA

SRP041095: Caenorhabditis elegans Transcriptome or Gene expression

SRP041461: A new dataset of spermatogenic vs oogenic transcriptomes in the nematode C. elegans

SRP041708: Paternal RNA contributions in the C. elegans zygote

Max Planck Institute of Immunobiology and Epigenetics

Paternal RNA contributions in the Caenorhabditis elegans zygote. (Stoeckius .. Rajewsky, 2014)

15 runs in ENA

SRP042044: Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes

Laboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School

Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. (Visvikis .. Irazoqui, 2014)

8 runs in ENA

SRP042619: Global characterization of the oocyte-to-embryo transition in C. elegans uncovers a novel mRNA turnover mechanism

SRP043683: Neuronal CRTC-1 governs systemic mitochondrial metabolism and lifespan via a catecholamine signal

SRP043990: The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms

SRP044752: The role of SPK-1 in alternative splicing regulation in C. elegans

SRP044765: Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [RNA-Seq]

SRP044802: Caenorhabditis elegans PAT-Seq of Intestine, pharynx and body muscle transcriptomes

Arizona State University

4 runs in ENA

SRP045231: Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1. (Nakad .. Schulenburg, 2016)

56 runs in ENA

SRP045499: Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans [RNA-Seq]

Michael Hengartner, Institute of Molecular Life Sciences, University of Zurich

Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans. (Subasic .. Hengartner, 2015)

12 runs in ENA

SRP045715: RNA-seq of C.elegans treated with bcat-1 RNAi and controls

Leibniz Institute for Age Research - Fritz Lipmann Institute

Branched-chain amino acid catabolism is a conserved regulator of physiological ageing. (Mansfeld .. Ristow, 2015)

6 runs in ENA

SRP045742: Caenorhabditis elegans strain:N2, rde-4::unc-69, hrde-1 Transcriptome or Gene expression

SRP045778: Caenorhabditis elegans high resolution developmental transcriptomic time-course

Yanai, Biology, Technion - Israel Institute of Technology

The mid-developmental transition and the evolution of animal body plans. (Levin .. Yanai, 2016)

85 runs in ENA

SRP047293: Differential gene expression in ahr-1 mutants compared to wild-type C. elegans

SRP047336: TDP-1, the C. elegans ortholog of TDP-43, limits the accumulation of double stranded RNA

Link Lab, Integrative Physiology, University of Colorado Boulder

TDP-1, the Caenorhabditis elegans ortholog of TDP-43, limits the accumulation of double-stranded RNA. (Saldi .. Link, 2014)

20 runs in ENA

SRP047464: The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.

Jay Hesselberth, Biochemistry and Molecular Gentetics, University of Colorado School of Medicine

The RtcB RNA ligase is an essential component of the metazoan unfolded protein response. (Kosmaczewski .. Hammarlund, 2014)

4 runs in ENA

SRP049280: Tri-methylation of lysine 36 on H3 restricts gene expression variation during aging and impacts lifespan

Siu Sylvia Lee, Molecular Biology and Genetics, Cornell University

Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span. (Pu .. Lee, 2015)

20 runs in ENA

SRP049395: The DREAM complex promotes gene body deposition of H2A.Z for target repression

Ahringer Lab, The Gurdon Institute, University of Cambridge

The DREAM complex promotes gene body H2A.Z for target repression. (Latorre .. Ahringer, 2015)

6 runs in ENA

SRP049413: Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)

SRP049596: RNA-seq analysis of germline stem cell removal and loss of SKN-1 in C. elegans

Keith Blackwell Lab, Islet Cell and Regenerative Biology, Joslin Diabetes Center

Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence. (Steinbaugh .. Blackwell, 2015)

12 runs in ENA

SRP050039: A variety of Dicer substrates in human and C. elegans (CEL RNA-seq)

Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)

3 runs in ENA

SRP050116: Suppression of Transcriptional Drift Extends C. elegans Lifespan by Postponing the Onset of Mortality

SRP050505: Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

SRP051404: Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans towards pathogenic Bacillus thuringiensis

Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel

Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis. (Yang .. Schulenburg, 2015)

24 runs in ENA

SRP051702: mRNA profiling of wildtype, germline depleted, NMD mutant C. elegans whole worms and wildtype dissected gonads

Alan Zahler, MCD Biology, University of California-Santa Cruz

Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans. (Ragle .. Zahler, 2015)

5 runs in ENA

SRP052923: Transcriptomic analysis of germline tumor in fasted C. elegans

Developmental Cell Biology, Biochemistry, Buchmann Institute for Molecular Life Sciences

Autophagy and modular restructuring of metabolism control germline tumor differentiation and proliferation in C. elegans. (Gomes .. Pohl, 2016)

5 runs in ENA

SRP053371: H3K36 methylation promotes longevity by enhancing transcriptional fidelity [Worm RNA-Seq]

Zaret Lab, Cell & Developmental Biology, The University of Pennsylvania

H3K36 methylation promotes longevity by enhancing transcriptional fidelity. (Sen .. Berger, 2015)

4 runs in ENA

SRP056286: Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [RNA-Seq]

SRP056647: Optimization of codon translation rates via tRNA modifications maintains proteome integrity

Sebastian Leidel, Max Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine

Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity. (Nedialkova .. Leidel, 2015)

6 runs in ENA

SRP057263: CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline

SRP057272: Endogenous DAF-16 genome-wide recruitment under low Insulin signalling condition in Caenorhabditis elegans

SRP057713: RNA sequencing of C. elegans lsm-1(tm3585) mutants at L3 stage

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Cytoplasmic LSM-1 protein regulates stress responses through the insulin/IGF-1 signaling pathway in Caenorhabditis elegans. (Cornes .. Cerón, 2015)

2 runs in ENA

SRP057881: Transcriptome analysis of N2 and flp-6 Caenorhabditis elegans at 25 °C

SRP058023: Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

University of California, Irvine

8 runs in ENA

SRP058746: Transcriptional profile of C. elegans following RNAi of elt-2 [L4 stage]

SRP058747: Transcriptional profile of C. elegans following over-expression of elt-2 [L4 stage & Day 13]

SRP058751: Transcriptional profile of C. elegans following RNAi of elt-2 [L1 stage]

SRP059285: Tissue homogeneity requires inhibition of unequal gene silencing during development

Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park

Tissue homogeneity requires inhibition of unequal gene silencing during development. (Le .. Jose, 2016)

1 runs in ENA

SRP059743: RNA sequencing analysis of DAF-16 target gene expression when math-33 function is genetically inactivated

SRP060311: Gene expression in four C.elegans natural isolates

University of Toronto

4 runs in ENA

SRP060554: Caenorhabditis elegans ALT transcriptome

Seoul National University

4 runs in ENA

SRP061927: Caenorhabditis elegans intestinal transcriptome

Max Planck Institute for Developmental Biology

2 runs in ENA

SRP062026: Defining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm

Biochemistry and Molecular Biology, Colorado State University

The function and regulation of the GATA factor ELT-2 in the C. elegans endoderm. (Wiesenfahrt .. McGhee, 2016)

2 runs in ENA

SRP062096: Transcriptome analysis of sexual dimorphism in the somatic gonadal precursor cells of Caenorhabditis elegans

SRP062670: Deep sequencing of poly(A)-selected RNAs from whole nematode C. elegans during aging

SRP062881: daf-16/FoxO isoform-specific deletion mutants

SRP063616: RNA-seq from animals treated with RNAi against prp-8, prp-6, and prp-31

SRP064324: Osmosensory neurons modulate hypertonic stress resistance in C. elegans by controlling protein damage in non-neuronal cells

SRP064516: Translation Readthrough Mitigation

SRP064859: RNA-seq for monitoring expression changes in absence of chromatin anchoring

SRP066258: Caenorhabditis elegans Transcriptome or Gene expression

Princeton University

14 runs in ENA

SRP066352: A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions

Dept. of Cellular & Molecular Medicine, University of California San Diego, Ludwig Institute for Cancer Research, San Diego Branch

A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions. (Gerson-Gurwitz .. Desai, 2016)

68 runs in ENA

SRP066376: Whole RNA sequencing to identify targets of ets-4 that are responsible for rege-1 (C30F12.1) phenotype

SRP066378: Whole RNA sequencing to identify targets of the RNase domain protein encoded by rege-1 (C30F12.1)

SRP066585: Caenorhabditis elegans strain:Bristol Transcriptome or Gene expression

Monash University

4 runs in ENA

SRP066993: RNA-seq from L4 animals treated with RNAi against gfp (control), ham-3, and swsn-2.2

SRP067921: Ingested double-stranded RNA engages multiple silencing mechanisms in C. elegans

Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park

2 runs in ENA

SRP067973: Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis

SRP068357: Nuclear Envelope Retention of LINC Complexes Is Promoted by SUN-1 Oligomerization in the Caenorhabditis elegans Germ Line

SRP068497: mRNA sequencing in cde-1 mutants versus WT C. elegans infected by the Orsay virus

Gurdon Institute, University of Cambridge

6 runs in ENA

SRP068564: Transcriptome profiling of sterile daf-2; mes-1 double vs. mes-1 single mutants

SRP069865: Caenorhabditis elegans strain:Bristol N2 Raw sequence reads

University of Massachusetts Medical School

12 runs in ENA

SRP069872: Uncoupling X chromosome number from sex determination separates contribution of sex and X dose to sex-biased gene expression in C. elegans

SRP070204: TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-Autonomously in Caenorhabditis elegans

SRP070753: Mitochondrial stress induces chromatin reorganization to promote longevity and UPRmt

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPR(mt). (Tian .. Dillin, 2016)

18 runs in ENA

SRP071138: HLH-30/TFEB-mediated autophagy functions in a cell-autonomous manner for epithelium intrinsic cellular defense against bacterial pore-forming toxin in C. elegans

National Cheng Kung University

4 runs in ENA

SRP071287: Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity

Dillin Lab, 430E Li Ka Shing, University of California, Berkeley

Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity. (Merkwirth .. Dillin, 2016)

15 runs in ENA

SRP071967: dsRNAs expressed in C. elegans development

SRP072091: Transcriptional profile of C. elegans fed E. coli (OP50) and B. subtilis (PY79)

SRP072327: Anchoring of Heterochromatin to the Nuclear Lamina Reinforces Dosage Compensation-Mediated Gene Repression

SRP072711: Caenorhabditis elegans Periodic An/Tn Clusters

Stanford University

4 runs in ENA

SRP072746: Localization of RNAPII and 3’ end formation factor CstF subunits on C. elegans genes and operons [RNA-seq]

CU Boulder

8 runs in ENA

SRP072954: XRN2 Autoregulation and Control of Polycistronic Gene Expression in Caenorhabditis elegans

SRP073117: Post-transcriptional regulation by the let-7 microRNA and the TRIM-NHL protein LIN41 [RNA-seq]

SRP074175: mRNA expression profile of dop-1 mutants to wild- type animals during adulthood (L4+48 hours) using RNA-seq

Room 33, Department of Genetics, Waksman Institute, Rutgers The State University of New Jersey

Dopamine signaling promotes the xenobiotic stress response and protein homeostasis. (Joshi .. Rongo, 2016)

6 runs in ENA

SRP075274: RNA-seq analysis in C. elegans larval development and heat shock

SRP075276: RNA-seq analysis of hsf-1 mutant in C. elegans larval development

SRP075489: Germline- and soma-specific heritable epigenetic silencing at an endogenous locus (RNA-Seq)

Craig P. Hunter, Molecular and Cellular Biology, Harvard University

Stable Heritable Germline Silencing Directs Somatic Silencing at an Endogenous Locus. (Minkina .. Hunter, 2017)

8 runs in ENA

SRP075984: Caenorhabditis elegans strain:N2 Raw sequence reads

Arizona State University

9 runs in ENA

SRP076298: A-to-I RNA editing promotes developmental-stage specific gene and lncRNA expression

SRP076404: Expression profiles in Caenorhabditis elegans mutants lacking an intestinally expressed microRNA mir-60 that promote adaptive response against chronic oxidative stress

The Laboratory of Ageing, Centenary Institute, The University of Sydney

An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans. (Kato .. Cheng, 2016)

14 runs in ENA

SRP076415: Developmental transcriptomes of the two sexes in Caenorhabditis elegans during sexual maturation

Scott Emmons lab, Genetics, Albert Einstein College of Medicine

Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans. (Kim .. Emmons, 2016)

10 runs in ENA

SRP076810: Transgenerational transmission of environmental information in C. elegans

SRP076816: GEO accession GSE83523 is currently private and is scheduled to be released on Jul 05, 2018.

Technion

1997 runs in ENA

SRP077649: Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

SRP078295: The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

University of South Florida

8 runs in ENA

SRP078331: An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males

SRP078368: C. elegans polyA selected RNA-seq raw sequencing reads

University of California, San Diego

6 runs in ENA

SRP078939: Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase

SRP080806: Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but required for RNA:DNA hybrid-associated repeat stability

Friedrich Miescher Institute for Biomedical Research

18 runs in ENA

SRP081065: Caenorhabditis elegans Transcriptome or Gene expression

Kunming Institute of Botany, Chinese Academy of Sciences

6 runs in ENA

SRP081238: Comparison of transcriptomes of sig-7 (RNAi) vs WT C. elegans early stage embryos by RNA-seq

MCD Biology, UC Santa Cruz

4 runs in ENA

SRP082984: LIN-28 balances longevity and germline stem cell number in C. elegans through let-7/AKT/DAF-16 axis

Jing-Dong J. Han's Lab, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

LIN-28 balances longevity and germline stem cell number in Caenorhabditis elegans through let-7/AKT/DAF-16 axis. (Wang .. Han, 2017)

4 runs in ENA

SRP084244: Comparative transcriptomics of Steinernema and Caenorhabditis single embryos reveals gene expression divergence during early embryogenesis

SRP086954: Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes SKN-1, IRE-1, and XBP-1

SRP089617: Caenorhabditis elegans Transcriptome or Gene expression

National Institute of Immunology

28 runs in ENA

SRP089981: Transcriptomic profiling of germlines and intestines of C. elegans deficient in the COMPASS H3K4me3 methyltransferase complex

SRP090119: mRNA Next Generation Sequencing of long-lived C. elegans mutants lacking the replication-independent histone variant H3.3

SRP090696: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress [RNA-seq]

SRP090699: Developmental constraints shape the evolution of the nematode mid-developmental transition

Technion

161 runs in ENA

SRP090988: Cooperation between a hierarchical set of recruitment sites specifically targets the C. elegans dosage compensation complex to the X chromosomes.

Ercan, Biology, New York University

5 runs in ENA

SRP092256: Gene expression changes in dauer defective strains

SRP093385: morc-1 regulates transgenerational heterochromatin maintenance at nuclear RNAi targets

SRP094762: mRNA-seq comparison of L1 larvae experiencing osmotic and starvation-induced arrest

SRP094827: RNA-seq of N2 and lin-45(n2018) mutant C.elegans responses to osmotic stress

SRP095453: Transcriptome profiling of P-granule-depleted or P-granule mutant gonads versus control gonads over time

SRP095467: L4, day 1, day 7 and day 10 old total RNA-Seq from Caenorhabditis elegans

University of Nevada, Reno

12 runs in ENA

SRP095671: RNA-Seq analysis of dietary restriction and loss of SEK-1 in C. elegans

Keith Blackwell, Islet Cell and Regenerative Biology, Joslin Diabetes Center

12 runs in ENA

SRP095719: The C. elegans transcriptome is regulated by environmental and developmental history

Life Sciences Complex, Biology, Syracuse University

16 runs in ENA

SRP095954: JMJD5/PHF8 regulates H3K36me2 and it is required for late steps of homologous recombination and genome integrity

SRP096640: Caenorhabditis elegans LITE-Seq germline 3''UTR sequencing

New York University

28 runs in ENA

SRP096897: Activation of DAF-16/FOXO by reactive oxygen species promotes longevity in long- lived mitochondrial mutants in C. elegans

Center For Neurodegenerative Science, Van Andel Research Institute

51 runs in ENA

SRP097655: Transcriptomics of a diet gene pair in C. elegans

National Institute of Immunology

5 runs in ENA

SRP097783: Analysis of nonsense-mediated mRNA decay in daf-2 mutants

SRP098734: Genome-wide expression analysis of Caenorhabditis elegans AXIN mutant

SRP098791: The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans

SRP098805: A Highly Conserved GAD-1 Is Required for Pre-mRNA Splicing and Transcription Elongation by Forming Spliceosome with NineTeen Complex

Hong Kong Baptist University

2 runs in ENA

SRP099636: Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT)

SRP100172: Impaired DNA replication derepresses chromatin and generates a transgenerationally inherited epigenetic memory

SRP100571: Role of STA-1 and SID-3 upon Orsay virus infection in C. elegans (RNA-Seq)

Gurdon Institute, University of Cambridge

36 runs in ENA

SRP100601: RNA-sequencing of C.elegans isp-1 mutant and superoxide dismutase-isp-1 double mutants

SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes

Washington University in St. Louis

16 runs in ENA

SRP100886: Genetic Analysis of a Metazoan Pathway using Transcriptomic Phenotypes

Caltech

7 runs in ENA

SRP101574: RNAseq of C. elegans N2 raised on LB- and M9-cultured E. coli MG1655

Baylor College of Medicine

6 runs in ENA

SRP103653: Caenorhabditis elegans RNA-seq project

Peking University School of Stomatology

4 runs in ENA

SRP103917: Two distinct transcription termination modes dictated by promoters

SRP104170: The role of the TGF-ß/DBL-1 pathway in shaping the C. elegans gut microbiota

UC Berkeley

12 runs in ENA

SRP104288: Impaired locomotor behavior of C. elegans neuroligin mutants is dependent of the catechol-O-methyltransferase COMT-4

SRP105206: A Chinese herbal formula, Gengnianchun, ameliorates ß-amyloid peptide toxicity in a Caenorhabditis elegans model of Alzheimer's disease

SRP106459: mRNA-seq comparison of N2 and tps1;tps2 double mutants with and without trehalose supplementation

SRP106801: RNA binding proteins in C. elegans

Harvard University

8 runs in ENA

SRP106869: Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex

Ohler, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. (Kolundzic .. Tursun, 2018)

15 runs in ENA

SRP106988: The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

UCSD

6 runs in ENA

SRP107232: Global proteomic- and transcriptomic analyses of starvation responses reveal a central role for lipoprotein metabolism in acute starvation survival in C. elegans

SRP107241: ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline

SRP108932: The rules of piRNA targeting reveals resistance of endogenous genes to piRNA silencing in C. elegans

University of Chicago

1 runs in ENA

SRP109222: RNA-seq of C. elegans worms treated with RNAi toward daf-2 or cav-1 or left untreated (EV) to compare gene expression profiles

The Hebrew University of Jerusalem

6 runs in ENA

SRP110292: Global Gene Expression profile in homozygous frk-1(ok760) mutants versus wildtype in the nematode, Caenorhabditis elegans using RNA Seq

Cold Spring Harbor Laboratory

6 runs in ENA

SRP110515: Beyond the polymerase-gamma theory: Respiratory chain inhibition and production of ROS as modes of NRTI induced mitochondrial toxicity

SRP110703: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

SRP110754: Chromatin reprogramming in primordial germ cells requires Nanos-dependent down-regulation of the synMuvB transcription factor LIN-15B

SRP110800: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity

Cornell University Lee lab

8 runs in ENA

SRP111062: H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility [RNA-seq]

Friedrich Miescher Institute

12 runs in ENA

SRP111138: The C. elegans ortholog of TDP-43 regulates the chromatin localization of the heterochromatin protein 1 homolog, HPL-2

SRP111346: Global characterization of direct substrates of nonsense-mediated mRNA decay in Caenorhabditis elegans

SRP112567: Variations in diet type and temperature significantly affect the transcriptional profile of C. elegans

SRP112904: Transcriptomic analysis of wild-type and lin-22 mutants in C.elegans

SRP112905: Transcriptomic analysis of control and Myzocytiopsis humicola-infected C. elegans

Michalis Barkoulas's lab, Life Sciences, Imperial College London

48 runs in ENA

SRP113021: RNA-seq of C.elegans sma-4(rax3), sma-2(rax5) and wild-type strains

Baylor College of Medicine

9 runs in ENA

SRP113614: Indole from commensal bacteria impact the aging transcriptome of C. elegans

Kalman Lab, Pathology & Laboratory Medicine, Emory University

Indoles from commensal bacteria extend healthspan. (Sonowal .. Kalman, 2017)

11 runs in ENA

SRP114957: RNAseq of FACS-sorted C.elegans neurons from wildtype and thoc-5(wy822) mutant animals.

SRP115391: Caenorhabditis elegans Raw sequence reads NHL-2

University of Massachusetts Medical School

12 runs in ENA

SRP115483: Two evolutionary developmental strategies for miRNA gene regulation in animal embryogenesis [CE_RNA-seq]

Itai Yanai, Biochemistry and Molecular Pharmacology, New York University, School of Medicine

Bimodal evolutionary developmental miRNA program in animal embryogenesis. (Avital .. Yanai, 2017)

24 runs in ENA

SRP116980: Dauer and reproductive development RNA-seq

California Institute of Technology

12 runs in ENA

SRP117631: Effect of liquid cultivations on N2 and AB1 strains of C. elegans

SRP119100: Transcriptomic response to changes in C. elegans diet

BioCI

4 runs in ENA

SRP119250: RNA-Seq of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

3 runs in ENA

SRP119251: Poly(A) Tail Length of L4 C. elegans

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)

2 runs in ENA

SRP119353: The combinatorial control of alternative splicing in C. elegans

University of Toronto

6 runs in ENA

SRP120036: The effects of mitochondrial- and histone stress on the C. elegans transcriptome

SRP123154: An Elongin-Cullin-SOCS-box Complex Regulates Stress-induced Serotonergic Neuromodulation Stress-induced Serotonergic Neuromodulation

SRP124524: Transcriptome analysis of C. elegans embryos lacking ADARs and the 26G pathway

SRP124969: Differential expression of H3.3 genes and their role in modulating temperature stress response in Caenorhabditis elegans

SRP126163: Role of SKN-1 in dpy-7 and osmotic gene induction

SRP126312: NHR-49/HNF4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting

Taubert Lab, Medical genetics, Centre for Molecular Medicine and Therapeutics, UBC

32 runs in ENA

SRP126629: The zinc finger transcription factor PQM-1 is a mediator of transcellular chaperone signalling and novel regulator of proteostasis in C. elegans

Faculty of Biological Sciences, School of Molecular and Cell Biology, Garstang 8.53c, UNIVERSITY OF LEEDS

6 runs in ENA

SRP127051: Hypoxia-inducible factor cell non-autonomously regulates C. elegans stress responses and behavior via a nuclear receptor

SRP129557: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression

University of California San Francisco

12 runs in ENA

SRP130946: SET-9 and SET-26 are H3K4me3 readers and play critical roles in germline development and longevity

SRP131397: Caenorhabditis elegans Raw sequence reads

University of Massachusetts Medical School

5 runs in ENA

SRP131463: Sequencing of Caenorhabditis elegans wildtype strain (N2) treated with T25B9.1 RNAi for 5 days after L4 larvae stage.

SRP132468: Ribotagging on NSM neurons in C. elegans

Flavell, Brain and Cognitive Sciences, MIT

8 runs in ENA

SRP133277: Comparison of transcriptomes of N2 and fog-2(q71) mutant Caenorhabditis elegans

Haag Lab, Department of Biology, University of Maryland

152 runs in ENA

SRP133403: Neurohormonal signalling via a cytosolic sulfotransferase controls insulin sensitivity of C. elegans

SRP133671: The Caenorhabditis elegans Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status

SRP134112: Discovery of unique loci that underlie nematode responses to benzimidazoles

Northwestern University

40 runs in ENA

SRP134126: Quantify fitness and dissect pleiotropic traits to study adaptation strategy of laboratory domesticated C. elegans strain N2

Georgia Institute of Technology

24 runs in ENA

SRP134390: RNA-seq from animals treated, and non treated, with cisplatin

Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL

Genetic and cellular sensitivity of Caenorhabditis elegans to the chemotherapeutic agent cisplatin. (García-Rodríguez .. Cerón, 2018)

4 runs in ENA

SRP136035: Effects of larval density on gene regulation in C. elegans during routine L1 synchronization

SRP136535: A Protein-Protein Interaction Underlies the Molecular Basis for Substrate Recognition by an Adenosine to Inosine RNA Editing Enzyme

SRP137713: RNA-seq on D5 C. elegans in WT(N2), alg-1(gk214), alg-2(ok304)

Pasquinelli Lab, Biological Sciences, University of California, San Diego

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging. (Aalto .. Pasquinelli, 2018)

9 runs in ENA

SRP140674: The memory of environmental chemical exposure in C. elegans is dependent on the Jumonji demethylases jmjd-2 and jmjd-3/utx-1

Allard lab and Yang Lab, Integrative Biology and Physiology, University of California Los Angeles

The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1. (Camacho .. Allard, 2018)

12 runs in ENA

SRP142175: mRNA of fed and starved C. elegans L1 larvae 3 generations following control, short-term dauer or long-term dauer conditions

SRP145566: Changes in piRNA and gene expressions upon temperature shift and bacterial infection

MRC London Institute of Medical Science

29 runs in ENA

SRP146096: Chromatin accessibility dynamics across C. elegans development and ageing [lcap]

SRP146247: Chromatin accessibility dynamics across C. elegans development and ageing [scap]

SRP149073: mRNA-seq of effects of food perception in C. elegans

SRP149465: Whole transcriptome profiling by RNA-sequencing of RNA from N2 and F01D4.5(baf20) C. elegans

University of Texas Health Science Center

10 runs in ENA

SRP150364: RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans

Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China

18 runs in ENA

SRP150370: C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, ''red-head worms'') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control)

SRP150372: RNA-seq transcriptome profiling of 1) C. elegans male germlines vs. oogenic germlines, and 2) male germlines, sperm, and F1 offspring germlines when offspring inherited sperm chromatin lacking H3K27me3.

SRP151477: Deciphering the C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

University of Washington

85 runs in ENA

SRP151483: Caenorhabditis elegans strain:Bristol (N2) Raw sequence reads

Princeton University

11 runs in ENA

SRP152334: DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity

Karolinska Institute

49 runs in ENA

SRP153335: Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression

Reinke lab, Genetics, Yale University School of Medicine

4 runs in ENA

SRP154142: WDR-23 and SKN-1 Nrf2 coordinate with the BLI-3 dual oxidase in response to iodide-triggered oxidative stress

SRP156483: Transcriptome wide change upon mitochondial stress in C.elegans

SRP164932: Quantitative Analysis of Worms after P. aeruginosa Infection

State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University

6 runs in ENA

SRP165209: RNA sequencing of cell-specific profile of AVK

SRP166156: Comparison of Pseudomonas responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166157: Comparison of R24 responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA

SRP166158: Comparison of heat responsive gene expression after histone methyltransferase RNAi in C. elegans

Suite 308, Program in Molecular Medicine, UMASS Medical School

16 runs in ENA