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RNASeq Caenorhabditis nigoni

Caenorhabditis nigoni - public RNASeq studies

Analysed

SRP067756: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing

Hong Kong Baptist University

Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression. (Li .. Zhao, 2016)

Design: 3 conditions

Condition num. replicates Developmental stage Genotype Phenotype Strain
C.briggsae mutant 1 3 young adult male Mostly C. nigoni genome, with X chromosome syntenic region replaced by C. briggsae X chromosome (from 16.4 M to the end) sterile ZZY10330
C.briggsae mutant 2 3 young adult male Mostly C. nigoni genome, with X chromosome syntenic region replaced by C. briggsae chromosome X (from 4.5M to 12.2M) sterile ZZY10307
wild type 3 young adult male wild type C. nigoni fertile JU1421

SRP120629: Caenorhabditis nigoni male and female transcriptomes

Cornell University

Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins. (Yin .. Haag, 2018)

Design: 2 conditions

Condition num. replicates Biomaterial provider Breed Description title Developmental stage Organism part Sample name Sex
C. nigoni adult females 12 Asher Cutter JU1421 Caenorhabditis nigoni adult females adult whole organism C. nigoni adult females female
C. nigoni adult males 12 Asher Cutter JU1421 Caenorhabditis nigoni adult males adult whole organism C. nigoni adult males male

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP067543: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing

Hong Kong Baptist University

1 run in ENA