WormBase ParaSite HomeVersion: WBPS16 (WS279)
RNASeq Caenorhabditis remanei

Caenorhabditis remanei - public RNASeq studies

Analysed

SRP016006: Caenorhabditis sex-specific RNAseq

Haag Lab, Department of Biology, University of Maryland

Simplification and desexualization of gene expression in self-fertile nematodes. (Thomas .. Haag, 2012)

Design: 2 conditions

Condition num. replicates Developmental stage Rna Strain
L4 & adult females 3 L4 & adult females poly-A RNA PB4641 (WT)
L4 & adult males 3 L4 & adult males poly-A RNA PB4641 (WT)

SRP040962: Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei

Institute of Ecology and Evolution, University of Oregon

Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei. (Sikkink .. Phillips, 2014)

Design: 6 conditions

Condition num. replicates Developmental stage Strain Temperature
Control selected, derived from PX443, 20°C 6 L1 Control selected, derived from PX443 20°C
Control selected, derived from PX443, 30°C 6 L1 Control selected, derived from PX443 30°C
Heat-selected, derived from PX443, 20°C 6 L1 Heat-selected, derived from PX443 20°C
Heat-selected, derived from PX443, 30°C 6 L1 Heat-selected, derived from PX443 30°C
PX443, 20°C 6 L1 PX443 20°C
PX443, 30°C 6 L1 PX443 30°C

SRP049403: Evolution of phenotypic plasticity and transgenerational effects of heat stress in the nematode Caenorhabditis remanei

Institute of Ecology and Evolution, University of Oregon

The transgenerational effects of heat stress in the nematode Caenorhabditis remanei are negative and rapidly eliminated under direct selection for increased stress resistance in larvae. (Sikkink .. Phillips, 2014)

Design: 6 conditions

Condition num. replicates Developmental stage Larval rearing temperature Parental temperature Strain
20°C, Control-selected, derived from PX443 2 L1 20°C 30°C Control-selected, derived from PX443
20°C, Heat-selected, derived from PX443 2 L1 20°C 30°C Heat-selected, derived from PX443
20°C, PX443 2 L1 20°C 30°C PX443
30°C, Control-selected, derived from PX443 2 L1 30°C 30°C Control-selected, derived from PX443
30°C, Heat-selected, derived from PX443 2 L1 30°C 30°C Heat-selected, derived from PX443
30°C, PX443 2 L1 30°C 30°C PX443

SRP126964: Dissecting the genetic basis of an evolved acute heat stress and oxidative stress resistance in the nematode Caenorhabditis remanei reveals a complex and unique genetic architecture

Biology, University of Oregon

Design: 4 conditions

Condition num. replicates Developmental stage Strain
Control selected, derived from PX443 8 L1 Control selected, derived from PX443
Heat-selected, derived from PX443 8 L1 Heat-selected, derived from PX443
Oxidative-selected, derived from PX443 6 L1 Oxidative-selected, derived from PX443
PX443 6 L1 PX443

SRP150050: Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the nematode Caenorhabditis remanei

Emilie Snell-Rood, Ecology, Evolution, and Behavior, University of Minnesota

Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode Caenorhabditis remanei. (Sikkink .. Phillips, 2019)

Design: 4 conditions

Condition num. replicates Strain Developmental stage Source name
Control selected, derived from PX443 16 Control selected, derived from PX443 L1 pooled L1 tissue
Heat selected, derived from PX443 16 Heat selected, derived from PX443 L1 pooled L1 tissue
Oxidative stress selected, derived from PX443 12 Oxidative stress selected, derived from PX443 L1 pooled L1 tissue
PX443 12 PX443 L1 pooled L1 tissue

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

SRP026198: mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition

SRP112745: Caenorhabditis remanei PX439 Genome sequencing

University of Oregon

1 run in ENA