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RNASeq Clonorchis sinensis

Clonorchis sinensis - public RNASeq studies


ERP006987: Clonorchis sinensis transcriptome

Guangzhou iGenomics Co.,Ltd

We conducted transcriptome sequencing of Clonorchis sinesis sub-organs (sucker, muscle, ovary and testis) with Illumina sequencing.
The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes. (Huang .. Yu, 2013)
E-MTAB-827 in ArrayExpress
Publication DOI

Design: 4 conditions

Condition num. replicates Organism part Strain
muscle 1 muscle He Nan, China
oral sucker 1 oral sucker He Nan, China
ovary 1 ovary He Nan, China
testis 1 testis He Nan, China


These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP006432: transcriptome of Clonorchis sinensis adult by Illumina technology

Sun Yat-sen University

1 run in ENA

SRP111155: Clonorchis sinensis isolate:Cs-k2 Genome sequencing

The University of Melbourne

3 runs in ENA