Clonorchis sinensis - public RNASeq studies
Table of Contents
Analysed
ERP006987: Clonorchis sinensis transcriptome
Guangzhou iGenomics Co.,Ltd
We conducted transcriptome sequencing of Clonorchis sinesis sub-organs (sucker, muscle, ovary and testis) with Illumina sequencing.
The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes. (Huang .. Yu, 2013)
E-MTAB-827 in ArrayExpress
Publication DOI
Design: 4 conditions
| Condition | num. replicates | Organism part | Strain |
|---|---|---|---|
| muscle | 1 | muscle | He Nan, China |
| oral sucker | 1 | oral sucker | He Nan, China |
| ovary | 1 | ovary | He Nan, China |
| testis | 1 | testis | He Nan, China |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
SRP006432: transcriptome of Clonorchis sinensis adult by Illumina technology
Sun Yat-sen University
1 run in ENA
SRP111155: Clonorchis sinensis isolate:Cs-k2 Genome sequencing
The University of Melbourne
3 runs in ENA
Release 14 - August 2019
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