Clonorchis sinensis - public RNASeq studies
Table of Contents
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP006987: Clonorchis sinensis transcriptome
Guangzhou iGenomics Co.,Ltd
We conducted transcriptome sequencing of Clonorchis sinesis sub-organs (sucker, muscle, ovary and testis) with Illumina sequencing.
The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes. (Huang .. Yu, 2013)
E-MTAB-827 in ArrayExpress
4 runs in ENA
SRP002596: miRNA expression profile analysis of Clonorchis sinensis by Solexa deep sequencing
parasitology laboratory, College of Veterinary Medicine, South China Agricultural University
1 run in ENA
SRP006432: transcriptome of Clonorchis sinensis adult by Illumina technology
Sun Yat-sen University
1 run in ENA
SRP111155: Clonorchis sinensis isolate:Cs-k2 Genome sequencing
The University of Melbourne
3 runs in ENA