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RNASeq Clonorchis sinensis

Clonorchis sinensis - public RNASeq studies

Table of Contents

Analysed

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

ERP006987: Clonorchis sinensis transcriptome

Guangzhou iGenomics Co.,Ltd

We conducted transcriptome sequencing of Clonorchis sinesis sub-organs (sucker, muscle, ovary and testis) with Illumina sequencing.
The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes. (Huang .. Yu, 2013)
E-MTAB-827 in ArrayExpress
Publication DOI

4 runs in ENA

SRP002596: miRNA expression profile analysis of Clonorchis sinensis by Solexa deep sequencing

parasitology laboratory, College of Veterinary Medicine, South China Agricultural University

Identification and characterization of microRNAs in Clonorchis sinensis of human health significance. (Xu .. Zhu, 2010)

1 run in ENA

SRP006432: transcriptome of Clonorchis sinensis adult by Illumina technology

Sun Yat-sen University

1 run in ENA

SRP111155: Clonorchis sinensis isolate:Cs-k2 Genome sequencing

The University of Melbourne

3 runs in ENA