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RNASeq Echinococcus granulosus

Echinococcus granulosus - public RNASeq studies

Analysed

ERP004459: Analysis of RNA expression in tapeworm species

Wellcome Sanger Institute

Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).

Design: 2 conditions

Condition num. replicates Developmental stage Organism part Strain
Metacestode, cyst wall 1 metacestode cyst wall G7
Non-activated protoscolex 3 Non-activated protoscolex G7

SRP131874: Echinococcus granulosus strain:G1 Raw sequence reads

LNCC

Design: 4 conditions

Condition num. replicates Developmental stage Geographic location Host Host organism part Treatment
Protoscoleces 1 metacestode, protoscoleces Brazil: Rio Grande do Sul Bos taurus liver
Protoscoleces, pepsin + biphasic medium, 12h 1 metacestode, protoscoleces Brazil: Rio Grande do Sul Bos taurus liver pepsin + biphasic medium, 12h
Protoscoleces, pepsin + biphasic medium, 24h 1 metacestode, protoscoleces Brazil: Rio Grande do Sul Bos taurus liver pepsin + biphasic medium, 24h
Protoscoleces, pepsin, 12h 1 metacestode, protoscoleces Brazil: Rio Grande do Sul Bos taurus liver pepsin, 12h

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

ERP001209: Cestode transcriptomics

Wellcome Sanger Institute

The main objective of this project is to recognize genes expressed in the life stages and tissue types of a variety of different cestode species, including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma, H. nana and others.

1 run in ENA

SRP044131: Transcriptome analysis of mRNA and microRNA in the cestodes Echinococcus granulosus and Echinococcus multilocularis