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RNASeq Echinococcus granulosus

Echinococcus granulosus - public RNASeq studies


ERP004459: Analysis of RNA expression in tapeworm species

Wellcome Sanger Institute

Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).

Design: 2 conditions

Condition num. replicates Developmental stage Organism part Strain
Metacestode, cyst wall 1 metacestode cyst wall G7
Non-activated protoscolex 3 Non-activated protoscolex G7


These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

ERP001209: Cestode transcriptomics

Wellcome Sanger Institute

The main objective of this project is to recognize genes expressed in the life stages and tissue types of a variety of different cestode species, including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma, H. nana and others.

SRP044131: Transcriptome analysis of mRNA and microRNA in the cestodes Echinococcus granulosus and Echinococcus multilocularis

SRP131874: Echinococcus granulosus strain:G1 Raw sequence reads